Wall clock time and date at job start Tue Mar 31 2020 22:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35451 * 128.00594 * 2 1 4 4 O 1.34046 * 106.44485 * 179.97438 * 3 2 1 5 5 N 1.20916 * 111.56831 * 359.70965 * 4 3 2 6 6 C 1.30176 * 111.60375 * 0.48272 * 5 4 3 7 7 C 1.50703 * 126.80141 * 179.79750 * 6 5 4 8 8 N 1.46899 * 109.47107 * 269.68661 * 7 6 5 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 H 1.08998 * 112.84393 * 25.33538 * 9 8 7 11 11 C 1.53777 * 113.61233 * 156.53100 * 9 8 7 12 12 C 1.53780 * 87.08301 * 139.98352 * 11 9 8 13 13 H 1.08998 * 113.61233 * 89.11386 * 12 11 9 14 14 C 1.52997 * 113.61572 * 219.93784 * 12 11 9 15 15 N 1.46503 * 109.47047 * 184.99843 * 14 12 11 16 16 C 1.34772 * 120.00023 * 179.97438 * 15 14 12 17 17 O 1.21284 * 120.00026 * 0.02562 * 16 15 14 18 18 C 1.50694 * 120.00162 * 180.02562 * 16 15 14 19 19 S 1.81002 * 109.47305 * 180.02562 * 18 16 15 20 20 C 1.76198 * 99.99886 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00519 * 359.97438 * 20 19 18 22 22 C 1.38801 * 119.99810 * 179.97438 * 20 19 18 23 23 N 1.31632 * 120.00068 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00065 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47243 * 89.99833 * 24 22 20 26 26 H 1.48503 * 109.46987 * 210.00477 * 24 22 20 27 27 H 1.48509 * 109.47103 * 329.99913 * 24 22 20 28 28 C 1.53775 * 113.61703 * 254.13711 * 9 8 7 29 29 H 1.09000 * 109.47289 * 270.03928 * 1 2 3 30 30 H 1.08995 * 109.47231 * 30.04395 * 1 2 3 31 31 H 1.09007 * 109.47047 * 150.04852 * 1 2 3 32 32 H 1.07998 * 126.77961 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.47152 * 149.68748 * 7 6 5 34 34 H 1.09001 * 109.46980 * 29.68849 * 7 6 5 35 35 H 1.00908 * 110.99847 * 56.05051 * 8 7 6 36 36 H 1.09005 * 113.61611 * 254.53185 * 11 9 8 37 37 H 1.09001 * 113.61781 * 25.43363 * 11 9 8 38 38 H 1.09007 * 109.46946 * 304.99436 * 14 12 11 39 39 H 1.08996 * 109.47662 * 64.99563 * 14 12 11 40 40 H 0.97000 * 119.99559 * 359.97438 * 15 14 12 41 41 H 1.09001 * 109.47219 * 300.00065 * 18 16 15 42 42 H 1.09001 * 109.47312 * 60.00259 * 18 16 15 43 43 H 0.97003 * 120.00098 * 179.97438 * 23 22 20 44 44 H 1.09004 * 113.61332 * 334.57016 * 28 9 8 45 45 H 1.09005 * 113.61343 * 105.46932 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5876 0.5747 0.0006 5 7 3.5878 -0.6345 0.0066 6 6 2.3776 -1.1139 0.0006 7 6 1.9827 -2.5683 0.0009 8 7 1.8549 -3.0413 -1.3840 9 6 1.4707 -4.4586 -1.4230 10 1 0.9387 -4.7777 -0.5267 11 6 0.7773 -4.8732 -2.7314 12 6 1.5859 -6.1789 -2.6543 13 1 1.0861 -6.9696 -2.0947 14 6 2.1149 -6.6532 -4.0093 15 7 2.7645 -7.9567 -3.8508 16 6 3.3080 -8.5731 -4.9190 17 8 3.2596 -8.0485 -6.0115 18 6 3.9757 -9.9142 -4.7561 19 16 4.6017 -10.4753 -6.3591 20 6 5.3101 -12.0182 -5.8879 21 1 5.2655 -12.3409 -4.8582 22 6 5.9256 -12.8189 -6.8401 23 7 5.9805 -12.4253 -8.0950 24 14 6.6774 -14.4543 -6.3404 25 1 5.6562 -15.5257 -6.4603 26 1 7.8260 -14.7634 -7.2295 27 1 7.1477 -14.3739 -4.9341 28 6 2.6205 -5.3977 -1.8239 29 1 -0.3634 0.0007 1.0276 30 1 -0.3633 0.8895 -0.5145 31 1 -0.3633 -0.8905 -0.5131 32 1 2.0575 2.1094 -0.0004 33 1 1.0284 -2.6857 0.5144 34 1 2.7462 -3.1520 0.5152 35 1 2.7076 -2.8838 -1.9000 36 1 -0.2980 -5.0188 -2.6286 37 1 1.0410 -4.2460 -3.5831 38 1 1.2861 -6.7433 -4.7116 39 1 2.8371 -5.9313 -4.3904 40 1 2.8035 -8.3761 -2.9770 41 1 4.8046 -9.8245 -4.0540 42 1 3.2532 -10.6360 -4.3750 43 1 6.4109 -12.9847 -8.7603 44 1 3.3891 -4.9142 -2.4270 45 1 3.0312 -5.9663 -0.9895 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691689729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:13 Heat of formation + Delta-G solvation = 10.844669 kcal Electronic energy + Delta-G solvation = -25150.839192 eV Core-core repulsion = 21297.152537 eV Total energy + Delta-G solvation = -3853.686654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.89834 -40.93539 -40.01335 -37.02230 -35.62834 -34.59371 -34.35728 -32.90079 -31.31063 -29.01143 -28.47941 -27.65251 -26.64716 -26.53301 -22.70969 -22.60818 -22.08363 -21.86336 -20.54409 -19.77339 -18.57571 -18.39526 -17.79561 -17.44231 -16.88775 -16.74753 -16.60307 -16.18775 -15.99999 -15.76707 -15.49831 -14.72582 -14.62817 -14.41371 -14.24229 -14.10391 -14.00430 -13.64510 -13.50025 -13.37527 -13.17569 -13.11657 -12.89861 -12.88623 -12.72533 -12.61216 -12.00585 -11.98069 -11.76306 -11.54255 -11.30898 -11.14947 -11.01659 -10.85363 -10.28672 -10.22242 -10.10151 -9.42116 -8.68061 -8.35355 -6.13913 0.59579 1.21591 1.26565 1.42160 1.46742 1.57249 1.60652 2.25808 2.30648 2.45122 2.98775 3.05001 3.30277 3.34735 3.55363 3.60191 3.62663 3.90404 3.95212 4.03399 4.06892 4.27669 4.28339 4.29696 4.40400 4.44335 4.49512 4.56852 4.70315 4.81758 4.85460 4.85617 4.88001 4.91166 4.94664 5.05890 5.11578 5.20248 5.35826 5.40917 5.41222 5.50117 6.02199 6.18999 6.20657 6.51645 7.05764 7.24947 7.32909 8.73955 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026926 B = 0.001460 C = 0.001434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.644578 B =19171.424401 C =19514.556157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.198 4.198 3 C -0.060 4.060 4 O 0.084 5.916 5 N -0.399 5.399 6 C 0.006 3.994 7 C 0.141 3.859 8 N -0.675 5.675 9 C 0.076 3.924 10 H 0.119 0.881 11 C -0.113 4.113 12 C -0.110 4.110 13 H 0.118 0.882 14 C 0.132 3.868 15 N -0.710 5.710 16 C 0.530 3.470 17 O -0.570 6.570 18 C -0.129 4.129 19 S -0.154 6.154 20 C -0.548 4.548 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.258 1.258 28 C -0.164 4.164 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.255 0.745 33 H 0.112 0.888 34 H 0.043 0.957 35 H 0.340 0.660 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.416 0.584 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.271 0.729 44 H 0.071 0.929 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.951 25.341 24.333 38.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.202 4.202 3 C -0.141 4.141 4 O 0.020 5.980 5 N -0.106 5.106 6 C -0.153 4.153 7 C 0.012 3.988 8 N -0.305 5.305 9 C -0.034 4.034 10 H 0.137 0.863 11 C -0.151 4.151 12 C -0.129 4.129 13 H 0.136 0.864 14 C 0.009 3.991 15 N -0.364 5.364 16 C 0.316 3.684 17 O -0.448 6.448 18 C -0.280 4.280 19 S 0.073 5.927 20 C -0.695 4.695 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.182 1.182 28 C -0.203 4.203 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.271 0.729 33 H 0.130 0.870 34 H 0.062 0.938 35 H 0.159 0.841 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.253 0.747 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.412 25.905 22.333 37.115 hybrid contribution 0.950 -1.846 1.420 2.515 sum -13.463 24.059 23.753 36.391 Atomic orbital electron populations 1.20158 0.85503 1.04147 1.03304 1.21689 1.00006 0.90906 1.07594 1.26595 0.81839 1.02866 1.02803 1.84770 1.30729 1.15058 1.67466 1.73864 1.23795 0.92346 1.20548 1.23791 0.88613 0.99543 1.03319 1.20249 1.01832 0.85771 0.90992 1.60478 1.39624 1.18461 1.11963 1.23043 0.96324 0.84851 0.99195 0.86332 1.23001 1.00110 0.94214 0.97816 1.22642 0.98245 0.98018 0.93991 0.86394 1.21383 0.96170 0.83279 0.98314 1.45759 1.58344 1.21502 1.10766 1.20110 0.77833 0.86101 0.84337 1.90691 1.59287 1.67172 1.27684 1.23372 1.03857 0.97180 1.03619 1.85597 1.73328 1.24154 1.09626 1.23214 1.42986 1.05214 0.98116 0.89864 1.26143 0.95806 1.02913 0.94280 1.70189 1.42639 1.39356 1.02608 0.84938 0.77752 0.76522 0.78657 1.19205 1.20300 1.18214 1.23810 0.97156 0.99144 1.00175 0.89934 0.89639 0.90826 0.72905 0.87014 0.93844 0.84148 0.89566 0.90498 0.92439 0.93156 0.74668 0.87326 0.87066 0.91980 0.91082 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.37 71.23 0.74 0.31 16 2 C -0.20 -2.25 6.32 -19.74 -0.12 -2.37 16 3 C -0.06 -0.57 12.26 67.18 0.82 0.26 16 4 O 0.08 1.42 11.20 71.59 0.80 2.22 16 5 N -0.40 -8.14 12.07 -49.56 -0.60 -8.73 16 6 C 0.01 0.10 6.84 43.58 0.30 0.40 16 7 C 0.14 1.76 6.04 85.56 0.52 2.28 16 8 N -0.67 -8.91 6.60 -492.86 -3.25 -12.16 16 9 C 0.08 0.80 4.16 45.44 0.19 0.99 16 10 H 0.12 0.86 7.88 -2.39 -0.02 0.84 16 11 C -0.11 -1.35 7.44 31.12 0.23 -1.12 16 12 C -0.11 -1.44 3.75 -10.21 -0.04 -1.48 16 13 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 14 C 0.13 2.92 5.52 86.38 0.48 3.40 16 15 N -0.71 -17.83 5.56 -463.06 -2.57 -20.40 16 16 C 0.53 19.95 7.85 87.66 0.69 20.64 16 17 O -0.57 -27.21 15.86 -3.04 -0.05 -27.25 16 18 C -0.13 -5.17 6.16 71.23 0.44 -4.73 16 19 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 20 C -0.55 -31.57 9.50 67.95 0.65 -30.93 16 21 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 22 C 0.01 0.76 5.49 84.86 0.47 1.23 16 23 N -0.91 -56.52 13.22 21.65 0.29 -56.23 16 24 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 28 C -0.16 -2.09 7.27 31.18 0.23 -1.86 16 29 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.26 -0.13 8.06 -2.91 -0.02 -0.15 16 33 H 0.11 0.96 8.13 -2.39 -0.02 0.94 16 34 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.34 5.49 8.20 -89.69 -0.74 4.75 16 36 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.08 1.16 8.10 -2.39 -0.02 1.14 16 38 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.05 1.30 7.86 -2.39 -0.02 1.28 16 40 H 0.42 7.39 8.47 -92.71 -0.79 6.60 16 41 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 42 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 43 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.07 1.16 7.59 -2.38 -0.02 1.14 16 45 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -82.25 396.76 0.55 -81.70 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -0.51 Total: 17.86 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 5.58 Total: -13.00 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -6.14 Total: -97.53 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: 0.75 Total: -25.03 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -82.25 0.55 -81.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691689729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.548 kcal (2) G-P(sol) polarization free energy of solvation -82.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds