Wall clock time and date at job start Tue Mar 31 2020 22:26:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 N 1.29517 * 121.53648 * 2 1
4 4 S 1.69485 * 107.84639 * 180.23420 * 3 2 1
5 5 C 1.72017 * 96.02304 * 359.72433 * 4 3 2
6 6 C 1.37891 * 105.36985 * 359.97438 * 5 4 3
7 7 C 1.47342 * 123.08819 * 180.02562 * 6 5 4
8 8 O 1.21617 * 119.99874 * 214.62796 * 7 6 5
9 9 N 1.34773 * 119.99947 * 34.62236 * 7 6 5
10 10 C 1.46922 * 120.63167 * 1.95539 * 9 7 6
11 11 C 1.53192 * 108.77488 * 233.62635 * 10 9 7
12 12 C 1.53043 * 109.31169 * 305.36544 * 11 10 9
13 13 C 1.53035 * 109.54123 * 61.36472 * 12 11 10
14 14 H 1.08998 * 109.52364 * 58.60143 * 13 12 11
15 15 N 1.46500 * 109.50132 * 178.68614 * 13 12 11
16 16 C 1.36937 * 120.00202 * 59.83171 * 15 13 12
17 17 H 1.08005 * 119.99492 * 59.82351 * 16 15 13
18 18 C 1.38803 * 120.00342 * 239.82600 * 16 15 13
19 19 N 1.31618 * 120.00430 * 201.14887 * 18 16 15
20 20 Si 1.86809 * 120.00058 * 21.14977 * 18 16 15
21 21 H 1.48493 * 109.47182 * 95.50774 * 20 18 16
22 22 H 1.48499 * 109.46895 * 215.50887 * 20 18 16
23 23 H 1.48497 * 109.46902 * 335.50522 * 20 18 16
24 24 C 1.46497 * 119.99719 * 239.84048 * 15 13 12
25 25 C 1.53004 * 109.46947 * 277.67345 * 24 15 13
26 26 O 1.42901 * 109.46869 * 62.54333 * 25 24 15
27 27 C 1.46923 * 120.62923 * 181.96876 * 9 7 6
28 28 H 1.09000 * 109.47259 * 270.26864 * 1 2 3
29 29 H 1.09008 * 109.47050 * 30.27098 * 1 2 3
30 30 H 1.09004 * 109.47664 * 150.26743 * 1 2 3
31 31 H 1.08008 * 127.31333 * 180.02562 * 5 4 3
32 32 H 1.09004 * 109.58845 * 353.41115 * 10 9 7
33 33 H 1.08998 * 109.58734 * 113.84141 * 10 9 7
34 34 H 1.09001 * 109.49970 * 65.31634 * 11 10 9
35 35 H 1.08992 * 109.49892 * 185.38052 * 11 10 9
36 36 H 1.09002 * 109.45813 * 301.34296 * 12 11 10
37 37 H 1.09002 * 109.46055 * 181.38602 * 12 11 10
38 38 H 0.96997 * 120.00964 * 179.97438 * 19 18 16
39 39 H 1.09003 * 109.47462 * 37.67547 * 24 15 13
40 40 H 1.09000 * 109.46822 * 157.67534 * 24 15 13
41 41 H 1.09003 * 109.46836 * 182.54554 * 25 24 15
42 42 H 1.09002 * 109.46931 * 302.54292 * 25 24 15
43 43 H 0.96699 * 113.99297 * 179.97438 * 26 25 24
44 44 H 1.09005 * 109.59120 * 6.58872 * 27 9 7
45 45 H 1.08993 * 109.70950 * 246.22980 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1844 1.1039 0.0000
4 16 3.8311 0.7028 -0.0066
5 6 3.6016 -1.0020 -0.0012
6 6 2.2352 -1.1868 0.0062
7 6 1.6035 -2.5180 0.0132
8 8 0.5569 -2.6975 -0.5795
9 7 2.1857 -3.5366 0.6764
10 6 3.4276 -3.3250 1.4324
11 6 4.4697 -4.3458 0.9644
12 6 3.8891 -5.7562 1.0913
13 6 2.6532 -5.8833 0.1977
14 1 2.9282 -5.6743 -0.8361
15 7 2.1166 -7.2429 0.2957
16 6 1.7035 -7.7303 1.5069
17 1 0.9134 -7.2316 2.0486
18 6 2.3003 -8.8653 2.0384
19 7 1.6704 -9.5739 2.9513
20 14 3.9975 -9.3871 1.4580
21 1 5.0243 -8.8558 2.3899
22 1 4.0761 -10.8697 1.4277
23 1 4.2410 -8.8506 0.0949
24 6 2.0220 -8.0811 -0.9020
25 6 0.7476 -7.7286 -1.6719
26 8 0.8144 -6.3689 -2.1065
27 6 1.5906 -4.8798 0.6570
28 1 -0.3634 0.0048 1.0276
29 1 -0.3633 0.8876 -0.5181
30 1 -0.3634 -0.8924 -0.5097
31 1 4.3656 -1.7655 -0.0024
32 1 3.7980 -2.3159 1.2518
33 1 3.2353 -3.4610 2.4966
34 1 4.7280 -4.1510 -0.0765
35 1 5.3634 -4.2629 1.5827
36 1 3.6082 -5.9413 2.1281
37 1 4.6373 -6.4861 0.7821
38 1 2.0871 -10.3672 3.3225
39 1 2.8903 -7.9064 -1.5374
40 1 1.9911 -9.1306 -0.6094
41 1 0.6539 -8.3829 -2.5386
42 1 -0.1176 -7.8602 -1.0220
43 1 0.0379 -6.0761 -2.6028
44 1 0.7488 -4.8966 -0.0353
45 1 1.2467 -5.1440 1.6569
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001692037366.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:26:55
Heat of formation + Delta-G solvation = -5.269345 kcal
Electronic energy + Delta-G solvation = -28866.208720 eV
Core-core repulsion = 25011.823310 eV
Total energy + Delta-G solvation = -3854.385411 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-40.61691 -38.61194 -37.34950 -36.38269 -34.85529 -32.63240 -31.71837 -31.62179
-29.86157 -29.61260 -27.43903 -25.87235 -24.13304 -23.65639 -22.39055 -21.51194
-20.53347 -19.67392 -19.00311 -17.80136 -16.98494 -16.73015 -16.41657 -15.82132
-15.18032 -14.96764 -14.95222 -14.77837 -14.26312 -13.96232 -13.81477 -13.51775
-13.38225 -13.09179 -12.98667 -12.69985 -12.51650 -12.43559 -12.28285 -12.13358
-11.82229 -11.57576 -11.46447 -10.94013 -10.88524 -10.80910 -10.66967 -10.45620
-10.30502 -10.20448 -9.89851 -9.85789 -9.57363 -9.45353 -9.26617 -8.84699
-8.57715 -8.30082 -6.44514 -6.07970 -3.77709 0.26387 1.17395 1.55539
1.80281 3.09602 3.28105 3.28968 3.40268 3.46194 4.28317 4.45683
4.59837 4.78454 4.83163 4.99760 5.09027 5.13674 5.19261 5.25139
5.28733 5.38563 5.50064 5.60898 5.70431 5.79979 5.91030 6.00980
6.03348 6.08271 6.10971 6.17799 6.24497 6.34289 6.46358 6.57446
6.62058 6.69201 6.76578 6.79931 7.04785 7.10925 7.66720 8.04307
8.24284 8.33166 8.55197 9.00724 9.59301 10.17303 11.01842
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.017304 B = 0.003625 C = 0.003309
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1617.706208 B = 7722.128860 C = 8458.605286
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.102 4.102
2 C 0.164 3.836
3 N -0.470 5.470
4 S 0.270 5.730
5 C -0.180 4.180
6 C -0.200 4.200
7 C 0.581 3.419
8 O -0.531 6.531
9 N -0.592 5.592
10 C 0.082 3.918
11 C -0.133 4.133
12 C -0.133 4.133
13 C 0.177 3.823
14 H 0.058 0.942
15 N -0.589 5.589
16 C -0.281 4.281
17 H 0.067 0.933
18 C 0.058 3.942
19 N -0.890 5.890
20 Si 0.868 3.132
21 H -0.286 1.286
22 H -0.298 1.298
23 H -0.260 1.260
24 C 0.151 3.849
25 C 0.056 3.944
26 O -0.564 6.564
27 C 0.109 3.891
28 H 0.082 0.918
29 H 0.077 0.923
30 H 0.112 0.888
31 H 0.201 0.799
32 H 0.092 0.908
33 H 0.072 0.928
34 H 0.060 0.940
35 H 0.070 0.930
36 H 0.075 0.925
37 H 0.055 0.945
38 H 0.264 0.736
39 H 0.036 0.964
40 H 0.069 0.931
41 H 0.024 0.976
42 H 0.047 0.953
43 H 0.363 0.637
44 H 0.095 0.905
45 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.696 15.322 -6.045 17.128
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C -0.013 4.013
3 N -0.290 5.290
4 S 0.426 5.574
5 C -0.328 4.328
6 C -0.221 4.221
7 C 0.366 3.634
8 O -0.409 6.409
9 N -0.323 5.323
10 C -0.041 4.041
11 C -0.172 4.172
12 C -0.172 4.172
13 C 0.070 3.930
14 H 0.076 0.924
15 N -0.311 5.311
16 C -0.410 4.410
17 H 0.084 0.916
18 C -0.145 4.145
19 N -0.528 5.528
20 Si 0.696 3.304
21 H -0.212 1.212
22 H -0.225 1.225
23 H -0.185 1.185
24 C 0.025 3.975
25 C -0.024 4.024
26 O -0.367 6.367
27 C -0.013 4.013
28 H 0.100 0.900
29 H 0.096 0.904
30 H 0.130 0.870
31 H 0.218 0.782
32 H 0.109 0.891
33 H 0.090 0.910
34 H 0.079 0.921
35 H 0.089 0.911
36 H 0.094 0.906
37 H 0.073 0.927
38 H 0.074 0.926
39 H 0.054 0.946
40 H 0.087 0.913
41 H 0.043 0.957
42 H 0.065 0.935
43 H 0.208 0.792
44 H 0.114 0.886
45 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 5.608 17.076 -5.919 18.923
hybrid contribution -0.162 -2.270 -0.288 2.294
sum 5.445 14.805 -6.207 16.952
Atomic orbital electron populations
1.20927 0.85631 1.05738 1.04062 1.21413 0.99446 0.86672 0.93800
1.76461 1.00176 1.26182 1.26219 1.84020 1.10955 0.96197 1.66229
1.27703 0.99679 1.04022 1.01437 1.20518 0.92341 0.96567 1.12697
1.17273 0.84228 0.82602 0.79293 1.90713 1.22677 1.82910 1.44594
1.48053 1.25325 1.10165 1.48796 1.22371 0.84951 1.00180 0.96597
1.21950 0.97561 0.96590 1.01133 1.22025 0.98590 0.93644 1.02917
1.20572 0.90298 0.85799 0.96359 0.92376 1.43852 1.72946 1.10346
1.03938 1.18502 1.15739 1.10666 0.96069 0.91562 1.25976 0.96937
0.96852 0.94782 1.69905 1.37011 1.15826 1.30059 0.86898 0.86864
0.76624 0.80009 1.21248 1.22526 1.18453 1.21240 0.93119 0.95201
0.87917 1.23006 1.01641 0.81863 0.95931 1.86550 1.45149 1.28827
1.76194 1.22286 0.98065 0.77910 1.03050 0.89983 0.90416 0.86981
0.78210 0.89087 0.90999 0.92139 0.91143 0.90640 0.92652 0.92596
0.94584 0.91292 0.95735 0.93491 0.79238 0.88640 0.90998
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.19 9.93 36.00 0.36 -0.83 16
2 C 0.16 2.13 6.74 -83.20 -0.56 1.57 16
3 N -0.47 -5.96 11.97 32.50 0.39 -5.57 16
4 S 0.27 2.64 23.69 -107.50 -2.55 0.10 16
5 C -0.18 -1.85 8.86 30.61 0.27 -1.58 16
6 C -0.20 -2.62 5.42 -105.95 -0.57 -3.19 16
7 C 0.58 9.21 7.29 -12.56 -0.09 9.12 16
8 O -0.53 -9.78 13.91 5.26 0.07 -9.70 16
9 N -0.59 -9.25 2.97 -174.07 -0.52 -9.77 16
10 C 0.08 1.03 5.76 -3.71 -0.02 1.01 16
11 C -0.13 -1.73 5.92 -26.61 -0.16 -1.88 16
12 C -0.13 -2.35 4.51 -26.69 -0.12 -2.47 16
13 C 0.18 3.43 2.03 -67.81 -0.14 3.29 16
14 H 0.06 1.16 7.44 -51.93 -0.39 0.77 16
15 N -0.59 -12.97 1.51 -165.52 -0.25 -13.22 16
16 C -0.28 -7.19 8.14 -15.06 -0.12 -7.31 16
17 H 0.07 1.90 7.42 -52.48 -0.39 1.51 16
18 C 0.06 1.55 5.18 -17.43 -0.09 1.46 16
19 N -0.89 -25.56 13.97 55.49 0.78 -24.78 16
20 Si 0.87 20.58 25.40 -169.99 -4.32 16.26 16
21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
22 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16
23 H -0.26 -5.90 6.10 56.52 0.35 -5.56 16
24 C 0.15 3.10 4.33 -4.04 -0.02 3.08 16
25 C 0.06 0.99 7.40 37.16 0.28 1.27 16
26 O -0.56 -9.81 11.64 -35.23 -0.41 -10.22 16
27 C 0.11 2.05 5.76 -3.71 -0.02 2.03 16
28 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16
29 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16
30 H 0.11 1.49 5.55 -51.93 -0.29 1.20 16
31 H 0.20 1.63 6.14 -52.48 -0.32 1.31 16
32 H 0.09 0.92 3.21 -51.93 -0.17 0.75 16
33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16
35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
36 H 0.07 1.49 7.70 -51.93 -0.40 1.09 16
37 H 0.05 1.04 7.06 -51.93 -0.37 0.67 16
38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16
39 H 0.04 0.72 8.01 -51.93 -0.42 0.30 16
40 H 0.07 1.48 6.55 -51.93 -0.34 1.14 16
41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16
43 H 0.36 4.86 9.12 45.56 0.42 5.28 16
44 H 0.10 1.97 6.26 -51.93 -0.32 1.65 16
45 H 0.07 1.48 7.08 -51.93 -0.37 1.12 16
LS Contribution 359.50 15.07 5.42 5.42
Total: -1.00 -30.77 359.50 -7.90 -38.67
By element:
Atomic # 1 Polarization: 12.76 SS G_CDS: -5.50 Total: 7.26 kcal
Atomic # 6 Polarization: 6.57 SS G_CDS: -1.01 Total: 5.56 kcal
Atomic # 7 Polarization: -53.74 SS G_CDS: 0.40 Total: -53.35 kcal
Atomic # 8 Polarization: -19.58 SS G_CDS: -0.34 Total: -19.92 kcal
Atomic # 14 Polarization: 20.58 SS G_CDS: -4.32 Total: 16.26 kcal
Atomic # 16 Polarization: 2.64 SS G_CDS: -2.55 Total: 0.10 kcal
Total LS contribution 5.42 Total: 5.42 kcal
Total: -30.77 -7.90 -38.67 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001692037366.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.401 kcal
(2) G-P(sol) polarization free energy of solvation -30.768 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.633 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.671 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.269 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds