Wall clock time and date at job start Tue Mar 31 2020 22:31:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.30254 * 125.61609 * 2 1
4 4 C 1.34480 * 108.70011 * 179.97438 * 3 2 1
5 5 C 1.50693 * 126.17064 * 179.97438 * 4 3 2
6 6 N 1.46902 * 109.47580 * 90.02050 * 5 4 3
7 7 C 1.47436 * 110.99852 * 69.87523 * 6 5 4
8 8 C 1.54317 * 107.23254 * 123.26025 * 7 6 5
9 9 C 1.55140 * 103.01829 * 22.28595 * 8 7 6
10 10 H 1.09002 * 110.99375 * 82.47746 * 9 8 7
11 11 N 1.46497 * 110.98983 * 206.25396 * 9 8 7
12 12 C 1.34777 * 120.00133 * 273.54624 * 11 9 8
13 13 O 1.21276 * 120.00009 * 359.97438 * 12 11 9
14 14 C 1.50698 * 120.00001 * 179.97438 * 12 11 9
15 15 S 1.81001 * 109.47141 * 179.97438 * 14 12 11
16 16 C 1.76203 * 100.00172 * 179.97438 * 15 14 12
17 17 H 1.07998 * 119.99637 * 0.02562 * 16 15 14
18 18 C 1.38799 * 120.00137 * 179.97438 * 16 15 14
19 19 N 1.31632 * 119.99714 * 0.02562 * 18 16 15
20 20 Si 1.86799 * 120.00250 * 180.02562 * 18 16 15
21 21 H 1.48497 * 109.46881 * 60.00073 * 20 18 16
22 22 H 1.48494 * 109.47130 * 179.97438 * 20 18 16
23 23 H 1.48500 * 109.47061 * 300.00538 * 20 18 16
24 24 C 1.47844 * 111.00335 * 190.72069 * 6 5 4
25 25 C 1.34335 * 107.66912 * 359.97438 * 4 3 2
26 26 C 1.50695 * 126.44642 * 179.97438 * 25 4 3
27 27 O 1.33969 * 125.61963 * 179.68662 * 2 1 3
28 28 H 1.09002 * 109.47152 * 90.00160 * 1 2 3
29 29 H 1.09001 * 109.46980 * 330.00260 * 1 2 3
30 30 H 1.09004 * 109.47113 * 210.00241 * 1 2 3
31 31 H 1.08996 * 109.47747 * 210.02461 * 5 4 3
32 32 H 1.09007 * 109.46899 * 330.02052 * 5 4 3
33 33 H 1.09001 * 109.89054 * 242.66323 * 7 6 5
34 34 H 1.09003 * 109.89102 * 3.69104 * 7 6 5
35 35 H 1.09005 * 110.70775 * 140.66704 * 8 7 6
36 36 H 1.08994 * 110.70615 * 263.90098 * 8 7 6
37 37 H 0.96999 * 120.00166 * 93.54773 * 11 9 8
38 38 H 1.08998 * 109.47516 * 299.99783 * 14 12 11
39 39 H 1.09005 * 109.47242 * 60.00216 * 14 12 11
40 40 H 0.97000 * 119.99813 * 179.97438 * 19 18 16
41 41 H 1.09001 * 110.37093 * 332.46619 * 24 6 5
42 42 H 1.09006 * 110.37031 * 94.80372 * 24 6 5
43 43 H 1.08999 * 109.47275 * 90.00397 * 26 25 4
44 44 H 1.08996 * 109.47575 * 210.00459 * 26 25 4
45 45 H 1.09004 * 109.47276 * 330.00339 * 26 25 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2656 1.0589 0.0000
4 6 3.5522 0.6676 0.0006
5 6 4.7570 1.5727 0.0002
6 7 5.1486 1.8674 1.3851
7 6 5.7087 0.6719 2.0416
8 6 7.1223 1.0426 2.5373
9 6 7.0630 2.5896 2.6374
10 1 6.6060 2.9030 3.5761
11 7 8.3964 3.1768 2.4845
12 6 9.2001 3.3127 3.5578
13 8 8.8193 2.9492 4.6504
14 6 10.5720 3.9162 3.4003
15 16 11.3991 3.9625 5.0097
16 6 12.9343 4.6910 4.5438
17 1 13.1143 4.9585 3.5131
18 6 13.9119 4.9220 5.5017
19 7 13.6922 4.5964 6.7581
20 14 15.5392 5.6950 5.0080
21 1 15.2918 7.0349 4.4176
22 1 16.4045 5.8350 6.2066
23 1 16.2146 4.8303 4.0074
24 6 6.1579 2.9467 1.4321
25 6 3.5698 -0.6756 0.0015
26 6 4.7937 -1.5549 0.0018
27 8 2.2873 -1.0890 0.0060
28 1 -0.3633 0.0000 -1.0277
29 1 -0.3633 0.8900 0.5138
30 1 -0.3633 -0.8900 0.5139
31 1 5.5821 1.0792 -0.5134
32 1 4.5130 2.5023 -0.5140
33 1 5.0827 0.3854 2.8867
34 1 5.7670 -0.1500 1.3280
35 1 7.3163 0.6003 3.5145
36 1 7.8776 0.7317 1.8156
37 1 8.7009 3.4679 1.6107
38 1 11.1576 3.3117 2.7078
39 1 10.4804 4.9298 3.0100
40 1 14.3755 4.7575 7.4274
41 1 6.7407 2.9616 0.5111
42 1 5.6752 3.9108 1.5924
43 1 5.0890 -1.7662 1.0296
44 1 4.5695 -2.4900 -0.5113
45 1 5.6080 -1.0444 -0.5125
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001698551063.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:31:25
Heat of formation + Delta-G solvation = -7.062437 kcal
Electronic energy + Delta-G solvation = -26135.244386 eV
Core-core repulsion = 22280.781221 eV
Total energy + Delta-G solvation = -3854.463165 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-43.68897 -39.95104 -38.48464 -35.52541 -34.48002 -33.43001 -32.43451 -31.32742
-30.65271 -29.50947 -28.26112 -26.72878 -25.47306 -24.69562 -22.34161 -21.44971
-21.43686 -20.73055 -20.05029 -17.88131 -17.36027 -16.96444 -16.70489 -16.34059
-15.92192 -15.09871 -14.92610 -14.80980 -14.74393 -14.60938 -14.17191 -13.88937
-13.81901 -13.64860 -13.39462 -13.15688 -13.15359 -13.00426 -12.76976 -12.59967
-12.29142 -12.17218 -11.74098 -11.71053 -11.50157 -11.27433 -11.05301 -11.04477
-10.88891 -10.77581 -10.72086 -9.83342 -9.44199 -9.07111 -8.95530 -8.90784
-8.60778 -8.24959 -6.50849 -6.22121 -3.92953 1.07325 2.26011 2.30164
2.97070 3.05906 3.22962 3.26177 3.29106 3.54526 3.65123 3.92233
4.19881 4.28031 4.33333 4.39989 4.56180 4.60179 4.77133 4.88489
4.90895 4.93087 4.97082 5.05659 5.11160 5.12949 5.13998 5.18860
5.23935 5.31451 5.38719 5.59086 5.61421 5.65131 5.72357 5.75925
5.86274 5.93605 5.98033 6.06212 6.12239 6.50748 6.65222 6.68832
7.45322 7.58508 7.67302 8.34294 8.58970 9.23002 10.85222
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.039392 B = 0.001685 C = 0.001681
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 710.634309 B =16609.925731 C =16651.261122
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 C 0.184 3.816
3 N -0.465 5.465
4 C 0.003 3.997
5 C 0.133 3.867
6 N -0.518 5.518
7 C 0.031 3.969
8 C -0.154 4.154
9 C 0.142 3.858
10 H 0.103 0.897
11 N -0.731 5.731
12 C 0.534 3.466
13 O -0.514 6.514
14 C -0.154 4.154
15 S -0.059 6.059
16 C -0.537 4.537
17 H 0.072 0.928
18 C 0.074 3.926
19 N -0.867 5.867
20 Si 0.919 3.081
21 H -0.274 1.274
22 H -0.283 1.283
23 H -0.274 1.274
24 C 0.040 3.960
25 C -0.045 4.045
26 C -0.074 4.074
27 O -0.203 6.203
28 H 0.091 0.909
29 H 0.101 0.899
30 H 0.087 0.913
31 H 0.054 0.946
32 H 0.093 0.907
33 H 0.078 0.922
34 H 0.066 0.934
35 H 0.084 0.916
36 H 0.071 0.929
37 H 0.398 0.602
38 H 0.089 0.911
39 H 0.090 0.910
40 H 0.269 0.731
41 H 0.054 0.946
42 H 0.091 0.909
43 H 0.090 0.910
44 H 0.080 0.920
45 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.100 -11.263 -18.716 31.792
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.023 4.023
3 N -0.195 5.195
4 C -0.118 4.118
5 C 0.004 3.996
6 N -0.243 5.243
7 C -0.096 4.096
8 C -0.194 4.194
9 C 0.035 3.965
10 H 0.121 0.879
11 N -0.385 5.385
12 C 0.320 3.680
13 O -0.388 6.388
14 C -0.304 4.304
15 S 0.167 5.833
16 C -0.685 4.685
17 H 0.090 0.910
18 C -0.135 4.135
19 N -0.503 5.503
20 Si 0.745 3.255
21 H -0.199 1.199
22 H -0.208 1.208
23 H -0.200 1.200
24 C -0.088 4.088
25 C -0.099 4.099
26 C -0.130 4.130
27 O -0.090 6.090
28 H 0.110 0.890
29 H 0.120 0.880
30 H 0.106 0.894
31 H 0.072 0.928
32 H 0.111 0.889
33 H 0.096 0.904
34 H 0.084 0.916
35 H 0.102 0.898
36 H 0.089 0.911
37 H 0.232 0.768
38 H 0.107 0.893
39 H 0.108 0.892
40 H 0.079 0.921
41 H 0.072 0.928
42 H 0.109 0.891
43 H 0.108 0.892
44 H 0.099 0.901
45 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -24.366 -11.132 -16.425 31.423
hybrid contribution 2.557 0.094 -2.434 3.531
sum -21.810 -11.037 -18.859 30.873
Atomic orbital electron populations
1.20243 0.81292 1.05169 1.04561 1.26233 0.96397 0.78559 1.01141
1.70326 1.01517 1.30074 1.17588 1.21188 0.93076 0.91433 1.06089
1.20425 0.91050 0.98058 0.90034 1.63508 1.38630 1.07078 1.15065
1.23122 0.94440 0.92558 0.99501 1.23202 0.96534 0.96721 1.02923
1.21932 0.82916 0.92210 0.99424 0.87898 1.45924 1.15782 1.65532
1.11308 1.20317 0.86187 0.77684 0.83788 1.90706 1.74677 1.47871
1.25522 1.23535 0.95494 1.03142 1.08257 1.85407 1.14101 1.81515
1.02233 1.22830 1.01065 1.47405 0.97226 0.90981 1.24989 0.98759
0.95320 0.94468 1.70008 1.34614 1.44750 1.00887 0.86224 0.81664
0.79558 0.78054 1.19937 1.20796 1.19957 1.23225 0.92356 0.96028
0.97236 1.23131 0.83942 0.95015 1.07821 1.20439 0.90085 0.98456
1.04017 1.84370 1.16473 1.37852 1.70338 0.89041 0.88030 0.89433
0.92779 0.88887 0.90396 0.91616 0.89763 0.91050 0.76829 0.89258
0.89176 0.92116 0.92803 0.89074 0.89190 0.90135 0.89052
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.26 10.51 36.01 0.38 0.12 16
2 C 0.18 1.72 8.34 -12.95 -0.11 1.62 16
3 N -0.47 -5.39 11.29 -7.36 -0.08 -5.48 16
4 C 0.00 0.03 6.24 -82.81 -0.52 -0.49 16
5 C 0.13 1.17 4.96 -4.98 -0.02 1.15 16
6 N -0.52 -5.16 5.15 -232.70 -1.20 -6.36 16
7 C 0.03 0.30 6.32 -2.84 -0.02 0.28 16
8 C -0.15 -1.66 6.64 -24.91 -0.17 -1.82 16
9 C 0.14 1.67 3.31 -65.80 -0.22 1.46 16
10 H 0.10 1.48 7.73 -51.93 -0.40 1.07 16
11 N -0.73 -9.39 5.23 -51.75 -0.27 -9.66 16
12 C 0.53 9.73 7.85 -10.99 -0.09 9.65 16
13 O -0.51 -11.51 15.61 5.56 0.09 -11.43 16
14 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16
15 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16
16 C -0.54 -15.23 9.50 30.94 0.29 -14.94 16
17 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16
18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16
19 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16
20 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16
21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16
22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
23 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16
24 C 0.04 0.37 6.31 -2.30 -0.01 0.35 16
25 C -0.05 -0.41 7.12 -35.69 -0.25 -0.67 16
26 C -0.07 -0.41 8.45 36.00 0.30 -0.11 16
27 O -0.20 -2.00 10.78 5.35 0.06 -1.95 16
28 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16
29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16
30 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16
31 H 0.05 0.38 6.99 -51.93 -0.36 0.02 16
32 H 0.09 0.82 8.07 -51.92 -0.42 0.40 16
33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16
34 H 0.07 0.50 3.31 -51.93 -0.17 0.33 16
35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16
36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
37 H 0.40 3.88 8.52 -40.82 -0.35 3.53 16
38 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16
39 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16
40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16
41 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16
42 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16
43 H 0.09 0.47 7.02 -51.93 -0.36 0.10 16
44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16
45 H 0.09 0.40 6.90 -51.93 -0.36 0.04 16
LS Contribution 383.65 15.07 5.78 5.78
Total: -1.00 -36.79 383.65 -9.03 -45.82
By element:
Atomic # 1 Polarization: 6.98 SS G_CDS: -6.60 Total: 0.38 kcal
Atomic # 6 Polarization: -3.92 SS G_CDS: -0.30 Total: -4.22 kcal
Atomic # 7 Polarization: -46.05 SS G_CDS: -0.82 Total: -46.87 kcal
Atomic # 8 Polarization: -13.52 SS G_CDS: 0.14 Total: -13.37 kcal
Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal
Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -36.79 -9.03 -45.82 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001698551063.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.757 kcal
(2) G-P(sol) polarization free energy of solvation -36.794 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.963 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.819 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.062 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds