Wall clock time and date at job start Tue Mar 31 2020 22:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30254 * 125.61609 * 2 1 4 4 C 1.34480 * 108.70011 * 179.97438 * 3 2 1 5 5 C 1.50693 * 126.17064 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.47580 * 90.02050 * 5 4 3 7 7 C 1.47436 * 110.99852 * 69.87523 * 6 5 4 8 8 C 1.54317 * 107.23254 * 123.26025 * 7 6 5 9 9 C 1.55140 * 103.01829 * 22.28595 * 8 7 6 10 10 H 1.09002 * 110.99375 * 82.47746 * 9 8 7 11 11 N 1.46497 * 110.98983 * 206.25396 * 9 8 7 12 12 C 1.34777 * 120.00133 * 273.54624 * 11 9 8 13 13 O 1.21276 * 120.00009 * 359.97438 * 12 11 9 14 14 C 1.50698 * 120.00001 * 179.97438 * 12 11 9 15 15 S 1.81001 * 109.47141 * 179.97438 * 14 12 11 16 16 C 1.76203 * 100.00172 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99637 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00137 * 179.97438 * 16 15 14 19 19 N 1.31632 * 119.99714 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00250 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46881 * 60.00073 * 20 18 16 22 22 H 1.48494 * 109.47130 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47061 * 300.00538 * 20 18 16 24 24 C 1.47844 * 111.00335 * 190.72069 * 6 5 4 25 25 C 1.34335 * 107.66912 * 359.97438 * 4 3 2 26 26 C 1.50695 * 126.44642 * 179.97438 * 25 4 3 27 27 O 1.33969 * 125.61963 * 179.68662 * 2 1 3 28 28 H 1.09002 * 109.47152 * 90.00160 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00260 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00241 * 1 2 3 31 31 H 1.08996 * 109.47747 * 210.02461 * 5 4 3 32 32 H 1.09007 * 109.46899 * 330.02052 * 5 4 3 33 33 H 1.09001 * 109.89054 * 242.66323 * 7 6 5 34 34 H 1.09003 * 109.89102 * 3.69104 * 7 6 5 35 35 H 1.09005 * 110.70775 * 140.66704 * 8 7 6 36 36 H 1.08994 * 110.70615 * 263.90098 * 8 7 6 37 37 H 0.96999 * 120.00166 * 93.54773 * 11 9 8 38 38 H 1.08998 * 109.47516 * 299.99783 * 14 12 11 39 39 H 1.09005 * 109.47242 * 60.00216 * 14 12 11 40 40 H 0.97000 * 119.99813 * 179.97438 * 19 18 16 41 41 H 1.09001 * 110.37093 * 332.46619 * 24 6 5 42 42 H 1.09006 * 110.37031 * 94.80372 * 24 6 5 43 43 H 1.08999 * 109.47275 * 90.00397 * 26 25 4 44 44 H 1.08996 * 109.47575 * 210.00459 * 26 25 4 45 45 H 1.09004 * 109.47276 * 330.00339 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 0.0006 5 6 4.7570 1.5727 0.0002 6 7 5.1486 1.8674 1.3851 7 6 5.7087 0.6719 2.0416 8 6 7.1223 1.0426 2.5373 9 6 7.0630 2.5896 2.6374 10 1 6.6060 2.9030 3.5761 11 7 8.3964 3.1768 2.4845 12 6 9.2001 3.3127 3.5578 13 8 8.8193 2.9492 4.6504 14 6 10.5720 3.9162 3.4003 15 16 11.3991 3.9625 5.0097 16 6 12.9343 4.6910 4.5438 17 1 13.1143 4.9585 3.5131 18 6 13.9119 4.9220 5.5017 19 7 13.6922 4.5964 6.7581 20 14 15.5392 5.6950 5.0080 21 1 15.2918 7.0349 4.4176 22 1 16.4045 5.8350 6.2066 23 1 16.2146 4.8303 4.0074 24 6 6.1579 2.9467 1.4321 25 6 3.5698 -0.6756 0.0015 26 6 4.7937 -1.5549 0.0018 27 8 2.2873 -1.0890 0.0060 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 5.5821 1.0792 -0.5134 32 1 4.5130 2.5023 -0.5140 33 1 5.0827 0.3854 2.8867 34 1 5.7670 -0.1500 1.3280 35 1 7.3163 0.6003 3.5145 36 1 7.8776 0.7317 1.8156 37 1 8.7009 3.4679 1.6107 38 1 11.1576 3.3117 2.7078 39 1 10.4804 4.9298 3.0100 40 1 14.3755 4.7575 7.4274 41 1 6.7407 2.9616 0.5111 42 1 5.6752 3.9108 1.5924 43 1 5.0890 -1.7662 1.0296 44 1 4.5695 -2.4900 -0.5113 45 1 5.6080 -1.0444 -0.5125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698551063.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:25 Heat of formation + Delta-G solvation = -7.062437 kcal Electronic energy + Delta-G solvation = -26135.244386 eV Core-core repulsion = 22280.781221 eV Total energy + Delta-G solvation = -3854.463165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.68897 -39.95104 -38.48464 -35.52541 -34.48002 -33.43001 -32.43451 -31.32742 -30.65271 -29.50947 -28.26112 -26.72878 -25.47306 -24.69562 -22.34161 -21.44971 -21.43686 -20.73055 -20.05029 -17.88131 -17.36027 -16.96444 -16.70489 -16.34059 -15.92192 -15.09871 -14.92610 -14.80980 -14.74393 -14.60938 -14.17191 -13.88937 -13.81901 -13.64860 -13.39462 -13.15688 -13.15359 -13.00426 -12.76976 -12.59967 -12.29142 -12.17218 -11.74098 -11.71053 -11.50157 -11.27433 -11.05301 -11.04477 -10.88891 -10.77581 -10.72086 -9.83342 -9.44199 -9.07111 -8.95530 -8.90784 -8.60778 -8.24959 -6.50849 -6.22121 -3.92953 1.07325 2.26011 2.30164 2.97070 3.05906 3.22962 3.26177 3.29106 3.54526 3.65123 3.92233 4.19881 4.28031 4.33333 4.39989 4.56180 4.60179 4.77133 4.88489 4.90895 4.93087 4.97082 5.05659 5.11160 5.12949 5.13998 5.18860 5.23935 5.31451 5.38719 5.59086 5.61421 5.65131 5.72357 5.75925 5.86274 5.93605 5.98033 6.06212 6.12239 6.50748 6.65222 6.68832 7.45322 7.58508 7.67302 8.34294 8.58970 9.23002 10.85222 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.039392 B = 0.001685 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.634309 B =16609.925731 C =16651.261122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.184 3.816 3 N -0.465 5.465 4 C 0.003 3.997 5 C 0.133 3.867 6 N -0.518 5.518 7 C 0.031 3.969 8 C -0.154 4.154 9 C 0.142 3.858 10 H 0.103 0.897 11 N -0.731 5.731 12 C 0.534 3.466 13 O -0.514 6.514 14 C -0.154 4.154 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.040 3.960 25 C -0.045 4.045 26 C -0.074 4.074 27 O -0.203 6.203 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.398 0.602 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.269 0.731 41 H 0.054 0.946 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.100 -11.263 -18.716 31.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.023 4.023 3 N -0.195 5.195 4 C -0.118 4.118 5 C 0.004 3.996 6 N -0.243 5.243 7 C -0.096 4.096 8 C -0.194 4.194 9 C 0.035 3.965 10 H 0.121 0.879 11 N -0.385 5.385 12 C 0.320 3.680 13 O -0.388 6.388 14 C -0.304 4.304 15 S 0.167 5.833 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.200 1.200 24 C -0.088 4.088 25 C -0.099 4.099 26 C -0.130 4.130 27 O -0.090 6.090 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.232 0.768 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -24.366 -11.132 -16.425 31.423 hybrid contribution 2.557 0.094 -2.434 3.531 sum -21.810 -11.037 -18.859 30.873 Atomic orbital electron populations 1.20243 0.81292 1.05169 1.04561 1.26233 0.96397 0.78559 1.01141 1.70326 1.01517 1.30074 1.17588 1.21188 0.93076 0.91433 1.06089 1.20425 0.91050 0.98058 0.90034 1.63508 1.38630 1.07078 1.15065 1.23122 0.94440 0.92558 0.99501 1.23202 0.96534 0.96721 1.02923 1.21932 0.82916 0.92210 0.99424 0.87898 1.45924 1.15782 1.65532 1.11308 1.20317 0.86187 0.77684 0.83788 1.90706 1.74677 1.47871 1.25522 1.23535 0.95494 1.03142 1.08257 1.85407 1.14101 1.81515 1.02233 1.22830 1.01065 1.47405 0.97226 0.90981 1.24989 0.98759 0.95320 0.94468 1.70008 1.34614 1.44750 1.00887 0.86224 0.81664 0.79558 0.78054 1.19937 1.20796 1.19957 1.23225 0.92356 0.96028 0.97236 1.23131 0.83942 0.95015 1.07821 1.20439 0.90085 0.98456 1.04017 1.84370 1.16473 1.37852 1.70338 0.89041 0.88030 0.89433 0.92779 0.88887 0.90396 0.91616 0.89763 0.91050 0.76829 0.89258 0.89176 0.92116 0.92803 0.89074 0.89190 0.90135 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 36.01 0.38 0.12 16 2 C 0.18 1.72 8.34 -12.95 -0.11 1.62 16 3 N -0.47 -5.39 11.29 -7.36 -0.08 -5.48 16 4 C 0.00 0.03 6.24 -82.81 -0.52 -0.49 16 5 C 0.13 1.17 4.96 -4.98 -0.02 1.15 16 6 N -0.52 -5.16 5.15 -232.70 -1.20 -6.36 16 7 C 0.03 0.30 6.32 -2.84 -0.02 0.28 16 8 C -0.15 -1.66 6.64 -24.91 -0.17 -1.82 16 9 C 0.14 1.67 3.31 -65.80 -0.22 1.46 16 10 H 0.10 1.48 7.73 -51.93 -0.40 1.07 16 11 N -0.73 -9.39 5.23 -51.75 -0.27 -9.66 16 12 C 0.53 9.73 7.85 -10.99 -0.09 9.65 16 13 O -0.51 -11.51 15.61 5.56 0.09 -11.43 16 14 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 15 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 16 C -0.54 -15.23 9.50 30.94 0.29 -14.94 16 17 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 20 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 24 C 0.04 0.37 6.31 -2.30 -0.01 0.35 16 25 C -0.05 -0.41 7.12 -35.69 -0.25 -0.67 16 26 C -0.07 -0.41 8.45 36.00 0.30 -0.11 16 27 O -0.20 -2.00 10.78 5.35 0.06 -1.95 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.38 6.99 -51.93 -0.36 0.02 16 32 H 0.09 0.82 8.07 -51.92 -0.42 0.40 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.50 3.31 -51.93 -0.17 0.33 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.40 3.88 8.52 -40.82 -0.35 3.53 16 38 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 39 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.09 0.47 7.02 -51.93 -0.36 0.10 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.40 6.90 -51.93 -0.36 0.04 16 LS Contribution 383.65 15.07 5.78 5.78 Total: -1.00 -36.79 383.65 -9.03 -45.82 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.60 Total: 0.38 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -0.30 Total: -4.22 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -0.82 Total: -46.87 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.14 Total: -13.37 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.79 -9.03 -45.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698551063.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.757 kcal (2) G-P(sol) polarization free energy of solvation -36.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds