Wall clock time and date at job start Tue Mar 31 2020 22:31:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.30254 * 125.61609 * 2 1
4 4 C 1.34480 * 108.70011 * 179.97438 * 3 2 1
5 5 C 1.50693 * 126.17064 * 179.97438 * 4 3 2
6 6 N 1.46902 * 109.47580 * 90.02050 * 5 4 3
7 7 C 1.47436 * 110.99852 * 69.87523 * 6 5 4
8 8 C 1.54317 * 107.23254 * 123.26025 * 7 6 5
9 9 C 1.55140 * 103.01829 * 22.28595 * 8 7 6
10 10 H 1.09002 * 110.99375 * 82.47746 * 9 8 7
11 11 N 1.46497 * 110.98983 * 206.25396 * 9 8 7
12 12 C 1.34777 * 120.00133 * 273.54624 * 11 9 8
13 13 O 1.21276 * 120.00009 * 359.97438 * 12 11 9
14 14 C 1.50698 * 120.00001 * 179.97438 * 12 11 9
15 15 S 1.81001 * 109.47141 * 179.97438 * 14 12 11
16 16 C 1.76203 * 100.00172 * 179.97438 * 15 14 12
17 17 H 1.07998 * 119.99637 * 0.02562 * 16 15 14
18 18 C 1.38799 * 120.00137 * 179.97438 * 16 15 14
19 19 N 1.31632 * 119.99714 * 0.02562 * 18 16 15
20 20 Si 1.86799 * 120.00250 * 180.02562 * 18 16 15
21 21 H 1.48497 * 109.46881 * 60.00073 * 20 18 16
22 22 H 1.48494 * 109.47130 * 179.97438 * 20 18 16
23 23 H 1.48500 * 109.47061 * 300.00538 * 20 18 16
24 24 C 1.47844 * 111.00335 * 190.72069 * 6 5 4
25 25 C 1.34335 * 107.66912 * 359.97438 * 4 3 2
26 26 C 1.50695 * 126.44642 * 179.97438 * 25 4 3
27 27 O 1.33969 * 125.61963 * 179.68662 * 2 1 3
28 28 H 1.09002 * 109.47152 * 90.00160 * 1 2 3
29 29 H 1.09001 * 109.46980 * 330.00260 * 1 2 3
30 30 H 1.09004 * 109.47113 * 210.00241 * 1 2 3
31 31 H 1.08996 * 109.47747 * 210.02461 * 5 4 3
32 32 H 1.09007 * 109.46899 * 330.02052 * 5 4 3
33 33 H 1.09001 * 109.89054 * 242.66323 * 7 6 5
34 34 H 1.09003 * 109.89102 * 3.69104 * 7 6 5
35 35 H 1.09005 * 110.70775 * 140.66704 * 8 7 6
36 36 H 1.08994 * 110.70615 * 263.90098 * 8 7 6
37 37 H 0.96999 * 120.00166 * 93.54773 * 11 9 8
38 38 H 1.08998 * 109.47516 * 299.99783 * 14 12 11
39 39 H 1.09005 * 109.47242 * 60.00216 * 14 12 11
40 40 H 0.97000 * 119.99813 * 179.97438 * 19 18 16
41 41 H 1.09001 * 110.37093 * 332.46619 * 24 6 5
42 42 H 1.09006 * 110.37031 * 94.80372 * 24 6 5
43 43 H 1.08999 * 109.47275 * 90.00397 * 26 25 4
44 44 H 1.08996 * 109.47575 * 210.00459 * 26 25 4
45 45 H 1.09004 * 109.47276 * 330.00339 * 26 25 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2656 1.0589 0.0000
4 6 3.5522 0.6676 0.0006
5 6 4.7570 1.5727 0.0002
6 7 5.1486 1.8674 1.3851
7 6 5.7087 0.6719 2.0416
8 6 7.1223 1.0426 2.5373
9 6 7.0630 2.5896 2.6374
10 1 6.6060 2.9030 3.5761
11 7 8.3964 3.1768 2.4845
12 6 9.2001 3.3127 3.5578
13 8 8.8193 2.9492 4.6504
14 6 10.5720 3.9162 3.4003
15 16 11.3991 3.9625 5.0097
16 6 12.9343 4.6910 4.5438
17 1 13.1143 4.9585 3.5131
18 6 13.9119 4.9220 5.5017
19 7 13.6922 4.5964 6.7581
20 14 15.5392 5.6950 5.0080
21 1 15.2918 7.0349 4.4176
22 1 16.4045 5.8350 6.2066
23 1 16.2146 4.8303 4.0074
24 6 6.1579 2.9467 1.4321
25 6 3.5698 -0.6756 0.0015
26 6 4.7937 -1.5549 0.0018
27 8 2.2873 -1.0890 0.0060
28 1 -0.3633 0.0000 -1.0277
29 1 -0.3633 0.8900 0.5138
30 1 -0.3633 -0.8900 0.5139
31 1 5.5821 1.0792 -0.5134
32 1 4.5130 2.5023 -0.5140
33 1 5.0827 0.3854 2.8867
34 1 5.7670 -0.1500 1.3280
35 1 7.3163 0.6003 3.5145
36 1 7.8776 0.7317 1.8156
37 1 8.7009 3.4679 1.6107
38 1 11.1576 3.3117 2.7078
39 1 10.4804 4.9298 3.0100
40 1 14.3755 4.7575 7.4274
41 1 6.7407 2.9616 0.5111
42 1 5.6752 3.9108 1.5924
43 1 5.0890 -1.7662 1.0296
44 1 4.5695 -2.4900 -0.5113
45 1 5.6080 -1.0444 -0.5125
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001698551063.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:31:24
Heat of formation + Delta-G solvation = -36.825910 kcal
Electronic energy + Delta-G solvation = -26136.535027 eV
Core-core repulsion = 22280.781221 eV
Total energy + Delta-G solvation = -3855.753806 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-44.35497 -41.06238 -39.63882 -36.36919 -35.39290 -34.57699 -34.22196 -32.26293
-31.20026 -30.67684 -29.19332 -27.75275 -27.41411 -25.30328 -23.08304 -22.48765
-22.20018 -21.73464 -20.99218 -19.83927 -18.10220 -17.99809 -17.72339 -17.27807
-16.90495 -16.86864 -16.35484 -16.22390 -15.58276 -15.48328 -15.17580 -14.80811
-14.65471 -14.42844 -14.40762 -14.33251 -13.98681 -13.74945 -13.53961 -13.39222
-13.24488 -13.16333 -13.00503 -12.86287 -12.63798 -12.61019 -12.49102 -12.45389
-12.02294 -11.76242 -11.72168 -11.44223 -11.12124 -10.97797 -10.26858 -10.13588
-9.58333 -9.30980 -8.66012 -8.33738 -6.11982 0.42585 1.26583 1.44573
1.46409 1.54445 1.59719 1.60449 1.73163 2.20048 2.28750 3.00395
3.00911 3.10837 3.33834 3.51082 3.61879 3.75523 3.84309 3.94965
4.02501 4.14297 4.24389 4.27342 4.32809 4.34943 4.42403 4.51387
4.52280 4.59451 4.63879 4.67553 4.77624 4.82400 4.86106 4.91268
5.03462 5.06880 5.13479 5.18985 5.36021 5.42342 5.44542 5.86302
5.95502 6.20323 6.50187 6.78161 7.07455 7.24752 8.75162
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.039392 B = 0.001685 C = 0.001681
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 710.634309 B =16609.925731 C =16651.261122
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 C 0.177 3.823
3 N -0.504 5.504
4 C -0.022 4.022
5 C 0.136 3.864
6 N -0.535 5.535
7 C 0.040 3.960
8 C -0.148 4.148
9 C 0.137 3.863
10 H 0.072 0.928
11 N -0.702 5.702
12 C 0.537 3.463
13 O -0.564 6.564
14 C -0.129 4.129
15 S -0.153 6.153
16 C -0.547 4.547
17 H 0.084 0.916
18 C 0.013 3.987
19 N -0.911 5.911
20 Si 0.998 3.002
21 H -0.262 1.262
22 H -0.280 1.280
23 H -0.261 1.261
24 C 0.052 3.948
25 C -0.049 4.049
26 C -0.075 4.075
27 O -0.213 6.213
28 H 0.110 0.890
29 H 0.104 0.896
30 H 0.104 0.896
31 H 0.079 0.921
32 H 0.091 0.909
33 H 0.061 0.939
34 H 0.089 0.911
35 H 0.060 0.940
36 H 0.087 0.913
37 H 0.418 0.582
38 H 0.112 0.888
39 H 0.111 0.889
40 H 0.271 0.729
41 H 0.083 0.917
42 H 0.090 0.910
43 H 0.095 0.905
44 H 0.093 0.907
45 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.776 -11.453 -21.914 33.618
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.029 4.029
3 N -0.234 5.234
4 C -0.141 4.141
5 C 0.008 3.992
6 N -0.260 5.260
7 C -0.087 4.087
8 C -0.188 4.188
9 C 0.031 3.969
10 H 0.090 0.910
11 N -0.356 5.356
12 C 0.323 3.677
13 O -0.442 6.442
14 C -0.280 4.280
15 S 0.074 5.926
16 C -0.695 4.695
17 H 0.102 0.898
18 C -0.191 4.191
19 N -0.548 5.548
20 Si 0.820 3.180
21 H -0.187 1.187
22 H -0.205 1.205
23 H -0.186 1.186
24 C -0.076 4.076
25 C -0.103 4.103
26 C -0.131 4.131
27 O -0.102 6.102
28 H 0.128 0.872
29 H 0.123 0.877
30 H 0.123 0.877
31 H 0.097 0.903
32 H 0.110 0.890
33 H 0.079 0.921
34 H 0.107 0.893
35 H 0.079 0.921
36 H 0.106 0.894
37 H 0.256 0.744
38 H 0.130 0.870
39 H 0.129 0.871
40 H 0.080 0.920
41 H 0.101 0.899
42 H 0.108 0.892
43 H 0.113 0.887
44 H 0.112 0.888
45 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges -24.066 -11.317 -19.692 33.091
hybrid contribution 2.288 0.110 -1.507 2.742
sum -21.778 -11.207 -21.198 32.392
Atomic orbital electron populations
1.20479 0.78543 1.06146 1.06019 1.27117 0.97862 0.78091 0.99875
1.70312 1.02543 1.31356 1.19188 1.21498 0.93205 0.92301 1.07117
1.20471 0.91312 0.98146 0.89289 1.63444 1.39025 1.07301 1.16259
1.23025 0.92956 0.93219 0.99513 1.23125 0.97970 0.95451 1.02225
1.21969 0.82264 0.93131 0.99561 0.90985 1.45589 1.15366 1.63879
1.10815 1.20074 0.86082 0.77397 0.84172 1.90700 1.75495 1.50265
1.27715 1.23369 0.95871 1.05070 1.03693 1.85611 1.15850 1.81965
1.09143 1.23184 1.01198 1.47269 0.97866 0.89803 1.26128 1.03069
0.95663 0.94271 1.70182 1.36088 1.46208 1.02312 0.85005 0.76189
0.78898 0.77915 1.18687 1.20487 1.18584 1.23129 0.91843 0.95761
0.96866 1.23729 0.84514 0.95276 1.06779 1.20619 0.89044 0.98728
1.04722 1.84385 1.17025 1.38238 1.70514 0.87215 0.87709 0.87715
0.90323 0.89017 0.92060 0.89319 0.92112 0.89407 0.74410 0.86980
0.87114 0.92024 0.89934 0.89184 0.88692 0.88847 0.87342
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.05 -0.44 10.51 71.24 0.75 0.31 16
2 C 0.18 3.21 8.34 88.34 0.74 3.95 16
3 N -0.50 -11.46 11.29 -291.98 -3.30 -14.76 16
4 C -0.02 -0.42 6.24 41.26 0.26 -0.17 16
5 C 0.14 2.11 4.96 85.55 0.42 2.54 16
6 N -0.54 -9.82 5.15 -890.12 -4.58 -14.40 16
7 C 0.04 0.71 6.32 86.65 0.55 1.26 16
8 C -0.15 -3.03 6.64 31.77 0.21 -2.82 16
9 C 0.14 3.11 3.31 46.38 0.15 3.26 16
10 H 0.07 2.13 7.73 -2.39 -0.02 2.11 16
11 N -0.70 -16.72 5.23 -436.02 -2.28 -19.00 16
12 C 0.54 19.28 7.85 87.66 0.69 19.97 16
13 O -0.56 -26.01 15.61 -3.02 -0.05 -26.06 16
14 C -0.13 -4.96 6.16 71.24 0.44 -4.52 16
15 S -0.15 -8.43 20.57 -56.49 -1.16 -9.60 16
16 C -0.55 -31.02 9.50 67.95 0.65 -30.37 16
17 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16
18 C 0.01 0.76 5.49 84.86 0.47 1.23 16
19 N -0.91 -55.96 13.22 21.65 0.29 -55.67 16
20 Si 1.00 43.26 29.55 68.60 2.03 45.29 16
21 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16
22 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16
23 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16
24 C 0.05 0.85 6.31 86.77 0.55 1.40 16
25 C -0.05 -0.83 7.12 24.79 0.18 -0.66 16
26 C -0.08 -0.66 8.45 71.23 0.60 -0.06 16
27 O -0.21 -4.03 10.78 -3.77 -0.04 -4.07 16
28 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16
29 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16
30 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16
31 H 0.08 0.82 6.99 -2.39 -0.02 0.80 16
32 H 0.09 1.44 8.07 -2.38 -0.02 1.42 16
33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16
34 H 0.09 1.13 3.31 -2.39 -0.01 1.13 16
35 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16
36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16
37 H 0.42 6.68 8.52 -92.71 -0.79 5.89 16
38 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16
39 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16
40 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16
41 H 0.08 0.91 7.67 -2.39 -0.02 0.89 16
42 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16
43 H 0.09 0.76 7.02 -2.39 -0.02 0.75 16
44 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16
45 H 0.11 0.58 6.90 -2.38 -0.02 0.56 16
Total: -1.00 -83.70 383.65 -2.22 -85.93
By element:
Atomic # 1 Polarization: 16.80 SS G_CDS: 0.23 Total: 17.03 kcal
Atomic # 6 Polarization: -11.33 SS G_CDS: 6.64 Total: -4.69 kcal
Atomic # 7 Polarization: -93.96 SS G_CDS: -9.87 Total: -103.83 kcal
Atomic # 8 Polarization: -30.04 SS G_CDS: -0.09 Total: -30.13 kcal
Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal
Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.60 kcal
Total: -83.70 -2.22 -85.93 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001698551063.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.101 kcal
(2) G-P(sol) polarization free energy of solvation -83.703 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.603 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.223 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.927 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.826 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds