Wall clock time and date at job start Tue Mar 31 2020 22:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30254 * 125.61609 * 2 1 4 4 C 1.34480 * 108.70011 * 179.97438 * 3 2 1 5 5 C 1.50693 * 126.17064 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.47580 * 90.02050 * 5 4 3 7 7 C 1.47436 * 110.99852 * 69.87523 * 6 5 4 8 8 C 1.54317 * 107.23254 * 123.26025 * 7 6 5 9 9 C 1.55140 * 103.01829 * 22.28595 * 8 7 6 10 10 H 1.09002 * 110.99375 * 82.47746 * 9 8 7 11 11 N 1.46497 * 110.98983 * 206.25396 * 9 8 7 12 12 C 1.34777 * 120.00133 * 273.54624 * 11 9 8 13 13 O 1.21276 * 120.00009 * 359.97438 * 12 11 9 14 14 C 1.50698 * 120.00001 * 179.97438 * 12 11 9 15 15 S 1.81001 * 109.47141 * 179.97438 * 14 12 11 16 16 C 1.76203 * 100.00172 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99637 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00137 * 179.97438 * 16 15 14 19 19 N 1.31632 * 119.99714 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00250 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46881 * 60.00073 * 20 18 16 22 22 H 1.48494 * 109.47130 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47061 * 300.00538 * 20 18 16 24 24 C 1.47844 * 111.00335 * 190.72069 * 6 5 4 25 25 C 1.34335 * 107.66912 * 359.97438 * 4 3 2 26 26 C 1.50695 * 126.44642 * 179.97438 * 25 4 3 27 27 O 1.33969 * 125.61963 * 179.68662 * 2 1 3 28 28 H 1.09002 * 109.47152 * 90.00160 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00260 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00241 * 1 2 3 31 31 H 1.08996 * 109.47747 * 210.02461 * 5 4 3 32 32 H 1.09007 * 109.46899 * 330.02052 * 5 4 3 33 33 H 1.09001 * 109.89054 * 242.66323 * 7 6 5 34 34 H 1.09003 * 109.89102 * 3.69104 * 7 6 5 35 35 H 1.09005 * 110.70775 * 140.66704 * 8 7 6 36 36 H 1.08994 * 110.70615 * 263.90098 * 8 7 6 37 37 H 0.96999 * 120.00166 * 93.54773 * 11 9 8 38 38 H 1.08998 * 109.47516 * 299.99783 * 14 12 11 39 39 H 1.09005 * 109.47242 * 60.00216 * 14 12 11 40 40 H 0.97000 * 119.99813 * 179.97438 * 19 18 16 41 41 H 1.09001 * 110.37093 * 332.46619 * 24 6 5 42 42 H 1.09006 * 110.37031 * 94.80372 * 24 6 5 43 43 H 1.08999 * 109.47275 * 90.00397 * 26 25 4 44 44 H 1.08996 * 109.47575 * 210.00459 * 26 25 4 45 45 H 1.09004 * 109.47276 * 330.00339 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 0.0006 5 6 4.7570 1.5727 0.0002 6 7 5.1486 1.8674 1.3851 7 6 5.7087 0.6719 2.0416 8 6 7.1223 1.0426 2.5373 9 6 7.0630 2.5896 2.6374 10 1 6.6060 2.9030 3.5761 11 7 8.3964 3.1768 2.4845 12 6 9.2001 3.3127 3.5578 13 8 8.8193 2.9492 4.6504 14 6 10.5720 3.9162 3.4003 15 16 11.3991 3.9625 5.0097 16 6 12.9343 4.6910 4.5438 17 1 13.1143 4.9585 3.5131 18 6 13.9119 4.9220 5.5017 19 7 13.6922 4.5964 6.7581 20 14 15.5392 5.6950 5.0080 21 1 15.2918 7.0349 4.4176 22 1 16.4045 5.8350 6.2066 23 1 16.2146 4.8303 4.0074 24 6 6.1579 2.9467 1.4321 25 6 3.5698 -0.6756 0.0015 26 6 4.7937 -1.5549 0.0018 27 8 2.2873 -1.0890 0.0060 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 5.5821 1.0792 -0.5134 32 1 4.5130 2.5023 -0.5140 33 1 5.0827 0.3854 2.8867 34 1 5.7670 -0.1500 1.3280 35 1 7.3163 0.6003 3.5145 36 1 7.8776 0.7317 1.8156 37 1 8.7009 3.4679 1.6107 38 1 11.1576 3.3117 2.7078 39 1 10.4804 4.9298 3.0100 40 1 14.3755 4.7575 7.4274 41 1 6.7407 2.9616 0.5111 42 1 5.6752 3.9108 1.5924 43 1 5.0890 -1.7662 1.0296 44 1 4.5695 -2.4900 -0.5113 45 1 5.6080 -1.0444 -0.5125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698551063.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:24 Heat of formation + Delta-G solvation = -36.825910 kcal Electronic energy + Delta-G solvation = -26136.535027 eV Core-core repulsion = 22280.781221 eV Total energy + Delta-G solvation = -3855.753806 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.35497 -41.06238 -39.63882 -36.36919 -35.39290 -34.57699 -34.22196 -32.26293 -31.20026 -30.67684 -29.19332 -27.75275 -27.41411 -25.30328 -23.08304 -22.48765 -22.20018 -21.73464 -20.99218 -19.83927 -18.10220 -17.99809 -17.72339 -17.27807 -16.90495 -16.86864 -16.35484 -16.22390 -15.58276 -15.48328 -15.17580 -14.80811 -14.65471 -14.42844 -14.40762 -14.33251 -13.98681 -13.74945 -13.53961 -13.39222 -13.24488 -13.16333 -13.00503 -12.86287 -12.63798 -12.61019 -12.49102 -12.45389 -12.02294 -11.76242 -11.72168 -11.44223 -11.12124 -10.97797 -10.26858 -10.13588 -9.58333 -9.30980 -8.66012 -8.33738 -6.11982 0.42585 1.26583 1.44573 1.46409 1.54445 1.59719 1.60449 1.73163 2.20048 2.28750 3.00395 3.00911 3.10837 3.33834 3.51082 3.61879 3.75523 3.84309 3.94965 4.02501 4.14297 4.24389 4.27342 4.32809 4.34943 4.42403 4.51387 4.52280 4.59451 4.63879 4.67553 4.77624 4.82400 4.86106 4.91268 5.03462 5.06880 5.13479 5.18985 5.36021 5.42342 5.44542 5.86302 5.95502 6.20323 6.50187 6.78161 7.07455 7.24752 8.75162 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.039392 B = 0.001685 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.634309 B =16609.925731 C =16651.261122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.177 3.823 3 N -0.504 5.504 4 C -0.022 4.022 5 C 0.136 3.864 6 N -0.535 5.535 7 C 0.040 3.960 8 C -0.148 4.148 9 C 0.137 3.863 10 H 0.072 0.928 11 N -0.702 5.702 12 C 0.537 3.463 13 O -0.564 6.564 14 C -0.129 4.129 15 S -0.153 6.153 16 C -0.547 4.547 17 H 0.084 0.916 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.998 3.002 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.261 1.261 24 C 0.052 3.948 25 C -0.049 4.049 26 C -0.075 4.075 27 O -0.213 6.213 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.418 0.582 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.271 0.729 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.776 -11.453 -21.914 33.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.029 4.029 3 N -0.234 5.234 4 C -0.141 4.141 5 C 0.008 3.992 6 N -0.260 5.260 7 C -0.087 4.087 8 C -0.188 4.188 9 C 0.031 3.969 10 H 0.090 0.910 11 N -0.356 5.356 12 C 0.323 3.677 13 O -0.442 6.442 14 C -0.280 4.280 15 S 0.074 5.926 16 C -0.695 4.695 17 H 0.102 0.898 18 C -0.191 4.191 19 N -0.548 5.548 20 Si 0.820 3.180 21 H -0.187 1.187 22 H -0.205 1.205 23 H -0.186 1.186 24 C -0.076 4.076 25 C -0.103 4.103 26 C -0.131 4.131 27 O -0.102 6.102 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.256 0.744 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -24.066 -11.317 -19.692 33.091 hybrid contribution 2.288 0.110 -1.507 2.742 sum -21.778 -11.207 -21.198 32.392 Atomic orbital electron populations 1.20479 0.78543 1.06146 1.06019 1.27117 0.97862 0.78091 0.99875 1.70312 1.02543 1.31356 1.19188 1.21498 0.93205 0.92301 1.07117 1.20471 0.91312 0.98146 0.89289 1.63444 1.39025 1.07301 1.16259 1.23025 0.92956 0.93219 0.99513 1.23125 0.97970 0.95451 1.02225 1.21969 0.82264 0.93131 0.99561 0.90985 1.45589 1.15366 1.63879 1.10815 1.20074 0.86082 0.77397 0.84172 1.90700 1.75495 1.50265 1.27715 1.23369 0.95871 1.05070 1.03693 1.85611 1.15850 1.81965 1.09143 1.23184 1.01198 1.47269 0.97866 0.89803 1.26128 1.03069 0.95663 0.94271 1.70182 1.36088 1.46208 1.02312 0.85005 0.76189 0.78898 0.77915 1.18687 1.20487 1.18584 1.23129 0.91843 0.95761 0.96866 1.23729 0.84514 0.95276 1.06779 1.20619 0.89044 0.98728 1.04722 1.84385 1.17025 1.38238 1.70514 0.87215 0.87709 0.87715 0.90323 0.89017 0.92060 0.89319 0.92112 0.89407 0.74410 0.86980 0.87114 0.92024 0.89934 0.89184 0.88692 0.88847 0.87342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.44 10.51 71.24 0.75 0.31 16 2 C 0.18 3.21 8.34 88.34 0.74 3.95 16 3 N -0.50 -11.46 11.29 -291.98 -3.30 -14.76 16 4 C -0.02 -0.42 6.24 41.26 0.26 -0.17 16 5 C 0.14 2.11 4.96 85.55 0.42 2.54 16 6 N -0.54 -9.82 5.15 -890.12 -4.58 -14.40 16 7 C 0.04 0.71 6.32 86.65 0.55 1.26 16 8 C -0.15 -3.03 6.64 31.77 0.21 -2.82 16 9 C 0.14 3.11 3.31 46.38 0.15 3.26 16 10 H 0.07 2.13 7.73 -2.39 -0.02 2.11 16 11 N -0.70 -16.72 5.23 -436.02 -2.28 -19.00 16 12 C 0.54 19.28 7.85 87.66 0.69 19.97 16 13 O -0.56 -26.01 15.61 -3.02 -0.05 -26.06 16 14 C -0.13 -4.96 6.16 71.24 0.44 -4.52 16 15 S -0.15 -8.43 20.57 -56.49 -1.16 -9.60 16 16 C -0.55 -31.02 9.50 67.95 0.65 -30.37 16 17 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 18 C 0.01 0.76 5.49 84.86 0.47 1.23 16 19 N -0.91 -55.96 13.22 21.65 0.29 -55.67 16 20 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 21 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 24 C 0.05 0.85 6.31 86.77 0.55 1.40 16 25 C -0.05 -0.83 7.12 24.79 0.18 -0.66 16 26 C -0.08 -0.66 8.45 71.23 0.60 -0.06 16 27 O -0.21 -4.03 10.78 -3.77 -0.04 -4.07 16 28 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.08 0.82 6.99 -2.39 -0.02 0.80 16 32 H 0.09 1.44 8.07 -2.38 -0.02 1.42 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.13 3.31 -2.39 -0.01 1.13 16 35 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.42 6.68 8.52 -92.71 -0.79 5.89 16 38 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 39 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 40 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16 41 H 0.08 0.91 7.67 -2.39 -0.02 0.89 16 42 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.09 0.76 7.02 -2.39 -0.02 0.75 16 44 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.11 0.58 6.90 -2.38 -0.02 0.56 16 Total: -1.00 -83.70 383.65 -2.22 -85.93 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.23 Total: 17.03 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 6.64 Total: -4.69 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -9.87 Total: -103.83 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.09 Total: -30.13 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.60 kcal Total: -83.70 -2.22 -85.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698551063.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.101 kcal (2) G-P(sol) polarization free energy of solvation -83.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds