Wall clock time and date at job start Tue Mar 31 2020 22:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34331 * 126.44432 * 2 1 4 4 N 1.34474 * 107.67029 * 180.25867 * 3 2 1 5 5 C 1.30258 * 108.70072 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.61867 * 180.02562 * 5 4 3 7 7 N 1.46893 * 109.47126 * 89.97904 * 6 5 4 8 8 C 1.47437 * 111.00574 * 69.87378 * 7 6 5 9 9 C 1.54313 * 107.23642 * 123.25570 * 8 7 6 10 10 C 1.55136 * 103.01976 * 22.28681 * 9 8 7 11 11 H 1.09003 * 110.99008 * 82.44082 * 10 9 8 12 12 N 1.46496 * 110.99323 * 206.21573 * 10 9 8 13 13 C 1.46502 * 120.00040 * 58.54191 * 12 10 9 14 14 C 1.34770 * 120.00357 * 238.54726 * 12 10 9 15 15 O 1.21282 * 120.00127 * 359.97438 * 14 12 10 16 16 C 1.50700 * 120.00266 * 179.97438 * 14 12 10 17 17 S 1.81004 * 109.47383 * 179.97438 * 16 14 12 18 18 C 1.76194 * 100.00040 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00224 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99789 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00215 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99743 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46936 * 90.00206 * 22 20 18 24 24 H 1.48498 * 109.46820 * 209.99917 * 22 20 18 25 25 H 1.48493 * 109.47156 * 329.99877 * 22 20 18 26 26 C 1.47852 * 110.99812 * 190.71543 * 7 6 5 27 27 O 1.33964 * 108.76191 * 0.02562 * 5 4 3 28 28 H 1.08997 * 109.47627 * 269.69038 * 1 2 3 29 29 H 1.09005 * 109.46869 * 29.69079 * 1 2 3 30 30 H 1.08998 * 109.47013 * 149.68470 * 1 2 3 31 31 H 1.07996 * 126.16271 * 0.24298 * 3 2 1 32 32 H 1.09004 * 109.46929 * 209.97844 * 6 5 4 33 33 H 1.09000 * 109.47272 * 329.97281 * 6 5 4 34 34 H 1.09000 * 109.88912 * 242.66795 * 8 7 6 35 35 H 1.08997 * 109.88762 * 3.68662 * 8 7 6 36 36 H 1.09004 * 110.70392 * 140.66661 * 9 8 7 37 37 H 1.09000 * 110.71077 * 263.89789 * 9 8 7 38 38 H 1.09006 * 109.46977 * 89.99657 * 13 12 10 39 39 H 1.08997 * 109.47552 * 210.00251 * 13 12 10 40 40 H 1.09004 * 109.46915 * 330.00753 * 13 12 10 41 41 H 1.09001 * 109.47432 * 300.00105 * 16 14 12 42 42 H 1.09000 * 109.47006 * 60.00417 * 16 14 12 43 43 H 0.97001 * 120.00170 * 180.02562 * 21 20 18 44 44 H 1.08992 * 110.37698 * 332.46327 * 26 7 6 45 45 H 1.09005 * 110.37251 * 94.80472 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5781 0.6478 -0.0058 5 6 3.5765 -0.6547 -0.0098 6 6 4.8004 -1.5340 -0.0163 7 7 5.2026 -1.8235 1.3665 8 6 4.2311 -2.7172 2.0233 9 6 5.0088 -3.9568 2.5132 10 6 6.4677 -3.4382 2.6106 11 1 6.6326 -2.9106 3.5500 12 7 7.4261 -4.5348 2.4526 13 6 7.4173 -5.3452 1.2322 14 6 8.3159 -4.7982 3.4299 15 8 8.3235 -4.1271 4.4401 16 6 9.3015 -5.9266 3.2676 17 16 10.3532 -6.0253 4.7375 18 6 11.3786 -7.3862 4.2892 19 1 11.2368 -7.8791 3.3388 20 6 12.3680 -7.8254 5.1580 21 7 12.5406 -7.2249 6.3166 22 14 13.4548 -9.2687 4.6830 23 1 14.6546 -8.7694 3.9644 24 1 13.8775 -9.9940 5.9078 25 1 12.6960 -10.1897 3.7992 26 6 6.5344 -2.4643 1.4078 27 8 2.3075 -1.0840 -0.0073 28 1 -0.3634 -0.0056 1.0276 29 1 -0.3633 0.8928 -0.5091 30 1 -0.3633 -0.8871 -0.5187 31 1 1.9821 2.1112 0.0037 32 1 4.5745 -2.4673 -0.5320 33 1 5.6130 -1.0218 -0.5314 34 1 3.7730 -2.2079 2.8711 35 1 3.4622 -3.0165 1.3112 36 1 4.6476 -4.2769 3.4906 37 1 4.9357 -4.7685 1.7894 38 1 8.0843 -4.8987 0.4947 39 1 7.7560 -6.3550 1.4640 40 1 6.4051 -5.3849 0.8296 41 1 8.7617 -6.8654 3.1429 42 1 9.9211 -5.7444 2.3896 43 1 13.2323 -7.5316 6.9235 44 1 6.7202 -3.0133 0.4848 45 1 7.3107 -1.7160 1.5681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698557912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:16 Heat of formation + Delta-G solvation = 5.005888 kcal Electronic energy + Delta-G solvation = -26333.521260 eV Core-core repulsion = 22479.581417 eV Total energy + Delta-G solvation = -3853.939843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.65379 -40.21324 -38.54372 -35.39327 -35.01558 -33.34024 -32.43813 -31.80193 -29.71128 -28.84704 -27.67268 -26.66686 -25.51312 -25.22539 -22.79439 -21.67036 -21.48965 -20.88859 -19.16212 -17.77856 -17.41755 -17.27618 -16.92131 -16.31154 -15.77717 -15.41091 -15.08331 -14.92293 -14.81435 -14.63471 -13.92525 -13.83254 -13.77347 -13.57260 -13.37145 -13.25915 -13.05046 -12.83652 -12.73299 -12.53900 -12.33844 -12.14560 -11.90347 -11.77097 -11.56228 -11.50176 -11.07345 -11.03614 -10.86972 -10.80043 -10.76692 -9.82103 -9.42356 -9.08172 -9.07529 -8.78498 -8.58222 -8.23968 -6.51404 -6.22493 -3.93353 1.05284 2.21291 2.35962 2.81853 2.98488 3.21546 3.23345 3.29089 3.49726 3.64688 3.77674 4.19118 4.28404 4.33979 4.48432 4.57061 4.64232 4.78145 4.84591 4.88471 4.90856 4.93390 5.00620 5.02773 5.12541 5.14565 5.16984 5.30502 5.33693 5.49161 5.51649 5.57488 5.64064 5.67774 5.70528 5.83090 5.89051 5.96000 6.00382 6.10406 6.37547 6.48564 6.64540 7.43802 7.46143 7.58520 8.34038 8.50257 9.22709 10.84882 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.042025 B = 0.001766 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.103057 B =15848.461138 C =15944.219721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.050 4.050 3 C -0.043 4.043 4 N -0.464 5.464 5 C 0.198 3.802 6 C 0.149 3.851 7 N -0.521 5.521 8 C 0.041 3.959 9 C -0.153 4.153 10 C 0.137 3.863 11 H 0.119 0.881 12 N -0.616 5.616 13 C 0.077 3.923 14 C 0.535 3.465 15 O -0.512 6.512 16 C -0.150 4.150 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.036 3.964 27 O -0.203 6.203 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.183 0.817 32 H 0.066 0.934 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.057 0.943 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.802 10.822 -17.208 31.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C -0.182 4.182 4 N -0.193 5.193 5 C -0.010 4.010 6 C 0.020 3.980 7 N -0.246 5.246 8 C -0.087 4.087 9 C -0.193 4.193 10 C 0.032 3.968 11 H 0.137 0.863 12 N -0.351 5.351 13 C -0.067 4.067 14 C 0.324 3.676 15 O -0.386 6.386 16 C -0.300 4.300 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.092 4.092 27 O -0.090 6.090 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.200 0.800 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.116 12.603 -15.280 30.441 hybrid contribution -0.073 -2.763 -2.009 3.417 sum -23.189 9.840 -17.289 30.553 Atomic orbital electron populations 1.20273 0.83997 1.04316 1.03888 1.23481 0.95035 0.84644 1.07178 1.23115 0.87838 1.00379 1.06873 1.70434 1.22869 1.09171 1.16828 1.25956 0.83773 0.90310 1.00925 1.20565 0.89757 0.96146 0.91497 1.63511 1.02727 1.44289 1.14100 1.22876 0.94378 0.91915 0.99487 1.23154 0.95469 0.97731 1.02916 1.22055 0.87348 0.87341 1.00084 0.86314 1.47731 1.35114 1.33237 1.19067 1.21769 1.01908 0.96114 0.86870 1.20382 0.80290 0.84802 0.82172 1.90703 1.70036 1.49751 1.28099 1.23559 1.00393 0.98409 1.07646 1.85424 1.37039 1.43797 1.17154 1.22854 1.20597 1.18151 1.06813 0.90942 1.24991 0.96719 0.97359 0.94475 1.70017 1.32065 1.39926 1.08198 0.86171 0.80115 0.81131 0.78099 1.20257 1.20743 1.19720 1.23363 0.90494 0.97009 0.98314 1.84377 1.17956 1.36724 1.69937 0.89714 0.88972 0.90394 0.80030 0.91560 0.86382 0.90027 0.92171 0.89825 0.90743 0.92574 0.90345 0.91502 0.89223 0.89179 0.92164 0.92460 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.43 36.00 0.38 0.11 16 2 C -0.05 -0.41 7.39 -35.69 -0.26 -0.67 16 3 C -0.04 -0.40 11.80 -17.77 -0.21 -0.61 16 4 N -0.46 -5.44 11.29 -11.10 -0.13 -5.57 16 5 C 0.20 2.05 7.25 -12.95 -0.09 1.96 16 6 C 0.15 1.24 5.17 -4.98 -0.03 1.22 16 7 N -0.52 -5.10 5.15 -232.70 -1.20 -6.29 16 8 C 0.04 0.38 6.42 -2.84 -0.02 0.36 16 9 C -0.15 -1.47 6.50 -24.91 -0.16 -1.64 16 10 C 0.14 1.64 3.45 -65.80 -0.23 1.41 16 11 H 0.12 1.76 7.01 -51.93 -0.36 1.40 16 12 N -0.62 -8.27 2.91 -171.49 -0.50 -8.77 16 13 C 0.08 0.74 8.92 59.85 0.53 1.27 16 14 C 0.54 9.94 7.69 -10.99 -0.08 9.86 16 15 O -0.51 -11.57 15.24 5.56 0.08 -11.48 16 16 C -0.15 -2.98 4.71 36.01 0.17 -2.81 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 22 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 C 0.04 0.36 6.25 -2.29 -0.01 0.34 16 27 O -0.20 -2.01 10.40 5.36 0.06 -1.95 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.07 0.43 7.96 -51.93 -0.41 0.02 16 33 H 0.12 0.88 8.07 -51.93 -0.42 0.46 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.50 6.98 -51.93 -0.36 0.14 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.63 6.30 -51.93 -0.33 0.30 16 38 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 39 H 0.08 0.78 6.44 -51.93 -0.33 0.44 16 40 H 0.07 0.49 6.32 -51.93 -0.33 0.16 16 41 H 0.09 1.64 7.40 -51.92 -0.38 1.26 16 42 H 0.09 1.66 8.11 -51.92 -0.42 1.24 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.06 0.47 6.72 -51.93 -0.35 0.12 16 45 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 383.07 15.07 5.77 5.77 Total: -1.00 -36.20 383.07 -8.86 -45.06 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -6.63 Total: -1.80 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 0.18 Total: -2.03 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: -1.09 Total: -45.94 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.14 Total: -13.43 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.20 -8.86 -45.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698557912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.067 kcal (2) G-P(sol) polarization free energy of solvation -36.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds