Wall clock time and date at job start Tue Mar 31 2020 22:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34331 * 126.44432 * 2 1 4 4 N 1.34474 * 107.67029 * 180.25867 * 3 2 1 5 5 C 1.30258 * 108.70072 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.61867 * 180.02562 * 5 4 3 7 7 N 1.46893 * 109.47126 * 89.97904 * 6 5 4 8 8 C 1.47437 * 111.00574 * 69.87378 * 7 6 5 9 9 C 1.54313 * 107.23642 * 123.25570 * 8 7 6 10 10 C 1.55136 * 103.01976 * 22.28681 * 9 8 7 11 11 H 1.09003 * 110.99008 * 82.44082 * 10 9 8 12 12 N 1.46496 * 110.99323 * 206.21573 * 10 9 8 13 13 C 1.46502 * 120.00040 * 58.54191 * 12 10 9 14 14 C 1.34770 * 120.00357 * 238.54726 * 12 10 9 15 15 O 1.21282 * 120.00127 * 359.97438 * 14 12 10 16 16 C 1.50700 * 120.00266 * 179.97438 * 14 12 10 17 17 S 1.81004 * 109.47383 * 179.97438 * 16 14 12 18 18 C 1.76194 * 100.00040 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00224 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99789 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00215 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99743 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46936 * 90.00206 * 22 20 18 24 24 H 1.48498 * 109.46820 * 209.99917 * 22 20 18 25 25 H 1.48493 * 109.47156 * 329.99877 * 22 20 18 26 26 C 1.47852 * 110.99812 * 190.71543 * 7 6 5 27 27 O 1.33964 * 108.76191 * 0.02562 * 5 4 3 28 28 H 1.08997 * 109.47627 * 269.69038 * 1 2 3 29 29 H 1.09005 * 109.46869 * 29.69079 * 1 2 3 30 30 H 1.08998 * 109.47013 * 149.68470 * 1 2 3 31 31 H 1.07996 * 126.16271 * 0.24298 * 3 2 1 32 32 H 1.09004 * 109.46929 * 209.97844 * 6 5 4 33 33 H 1.09000 * 109.47272 * 329.97281 * 6 5 4 34 34 H 1.09000 * 109.88912 * 242.66795 * 8 7 6 35 35 H 1.08997 * 109.88762 * 3.68662 * 8 7 6 36 36 H 1.09004 * 110.70392 * 140.66661 * 9 8 7 37 37 H 1.09000 * 110.71077 * 263.89789 * 9 8 7 38 38 H 1.09006 * 109.46977 * 89.99657 * 13 12 10 39 39 H 1.08997 * 109.47552 * 210.00251 * 13 12 10 40 40 H 1.09004 * 109.46915 * 330.00753 * 13 12 10 41 41 H 1.09001 * 109.47432 * 300.00105 * 16 14 12 42 42 H 1.09000 * 109.47006 * 60.00417 * 16 14 12 43 43 H 0.97001 * 120.00170 * 180.02562 * 21 20 18 44 44 H 1.08992 * 110.37698 * 332.46327 * 26 7 6 45 45 H 1.09005 * 110.37251 * 94.80472 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5781 0.6478 -0.0058 5 6 3.5765 -0.6547 -0.0098 6 6 4.8004 -1.5340 -0.0163 7 7 5.2026 -1.8235 1.3665 8 6 4.2311 -2.7172 2.0233 9 6 5.0088 -3.9568 2.5132 10 6 6.4677 -3.4382 2.6106 11 1 6.6326 -2.9106 3.5500 12 7 7.4261 -4.5348 2.4526 13 6 7.4173 -5.3452 1.2322 14 6 8.3159 -4.7982 3.4299 15 8 8.3235 -4.1271 4.4401 16 6 9.3015 -5.9266 3.2676 17 16 10.3532 -6.0253 4.7375 18 6 11.3786 -7.3862 4.2892 19 1 11.2368 -7.8791 3.3388 20 6 12.3680 -7.8254 5.1580 21 7 12.5406 -7.2249 6.3166 22 14 13.4548 -9.2687 4.6830 23 1 14.6546 -8.7694 3.9644 24 1 13.8775 -9.9940 5.9078 25 1 12.6960 -10.1897 3.7992 26 6 6.5344 -2.4643 1.4078 27 8 2.3075 -1.0840 -0.0073 28 1 -0.3634 -0.0056 1.0276 29 1 -0.3633 0.8928 -0.5091 30 1 -0.3633 -0.8871 -0.5187 31 1 1.9821 2.1112 0.0037 32 1 4.5745 -2.4673 -0.5320 33 1 5.6130 -1.0218 -0.5314 34 1 3.7730 -2.2079 2.8711 35 1 3.4622 -3.0165 1.3112 36 1 4.6476 -4.2769 3.4906 37 1 4.9357 -4.7685 1.7894 38 1 8.0843 -4.8987 0.4947 39 1 7.7560 -6.3550 1.4640 40 1 6.4051 -5.3849 0.8296 41 1 8.7617 -6.8654 3.1429 42 1 9.9211 -5.7444 2.3896 43 1 13.2323 -7.5316 6.9235 44 1 6.7202 -3.0133 0.4848 45 1 7.3107 -1.7160 1.5681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698557912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:15 Heat of formation + Delta-G solvation = -22.915869 kcal Electronic energy + Delta-G solvation = -26334.732039 eV Core-core repulsion = 22479.581417 eV Total energy + Delta-G solvation = -3855.150621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.32268 -41.30718 -39.65714 -36.51891 -35.74716 -34.57787 -34.02435 -32.54964 -30.91888 -29.69978 -28.53716 -27.73509 -27.48519 -25.90109 -23.48217 -22.57037 -22.34779 -21.62505 -20.40248 -19.59760 -18.45868 -17.96008 -17.94978 -17.26098 -16.87442 -16.72485 -16.70412 -16.19901 -15.69565 -15.55158 -15.24171 -14.63490 -14.54871 -14.42252 -14.30016 -14.24175 -14.06894 -13.78986 -13.57657 -13.43448 -13.20338 -13.17542 -13.12642 -12.89166 -12.75434 -12.65814 -12.54201 -12.42850 -12.27683 -11.74215 -11.67613 -11.51254 -11.13591 -10.92375 -10.25555 -9.76301 -9.66572 -9.46066 -8.66935 -8.33848 -6.12363 0.40083 1.24756 1.43221 1.44968 1.53424 1.55855 1.61060 1.70420 2.03695 2.28014 2.92093 3.00389 3.08318 3.26056 3.47240 3.64316 3.78350 3.81502 3.99002 4.06112 4.11717 4.13289 4.18974 4.25119 4.32098 4.35617 4.46268 4.48831 4.57791 4.65103 4.67798 4.70848 4.76174 4.85412 4.91264 5.02984 5.05385 5.11300 5.19194 5.32772 5.42447 5.47987 5.75963 5.80583 6.20188 6.24165 6.75804 7.07323 7.12304 8.75351 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.042025 B = 0.001766 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.103057 B =15848.461138 C =15944.219721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.046 4.046 3 C -0.068 4.068 4 N -0.499 5.499 5 C 0.185 3.815 6 C 0.151 3.849 7 N -0.537 5.537 8 C 0.050 3.950 9 C -0.141 4.141 10 C 0.129 3.871 11 H 0.081 0.919 12 N -0.599 5.599 13 C 0.065 3.935 14 C 0.533 3.467 15 O -0.566 6.566 16 C -0.121 4.121 17 S -0.156 6.156 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.257 1.257 26 C 0.049 3.951 27 O -0.211 6.211 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.202 0.798 32 H 0.093 0.907 33 H 0.124 0.876 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.085 0.915 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.342 9.416 -20.484 33.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.100 4.100 3 C -0.206 4.206 4 N -0.229 5.229 5 C -0.022 4.022 6 C 0.023 3.977 7 N -0.263 5.263 8 C -0.078 4.078 9 C -0.181 4.181 10 C 0.025 3.975 11 H 0.099 0.901 12 N -0.333 5.333 13 C -0.077 4.077 14 C 0.320 3.680 15 O -0.444 6.444 16 C -0.272 4.272 17 S 0.071 5.929 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.180 1.180 26 C -0.079 4.079 27 O -0.098 6.098 28 H 0.113 0.887 29 H 0.132 0.868 30 H 0.104 0.896 31 H 0.219 0.781 32 H 0.111 0.889 33 H 0.142 0.858 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.118 0.882 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -24.704 11.200 -18.618 32.899 hybrid contribution 0.240 -2.210 -1.069 2.467 sum -24.464 8.990 -19.687 32.663 Atomic orbital electron populations 1.20495 0.81032 1.05823 1.04960 1.24258 0.96580 0.83913 1.05206 1.23550 0.87363 1.01829 1.07826 1.70399 1.24479 1.10216 1.17830 1.26291 0.84459 0.90304 1.01186 1.20681 0.89342 0.97069 0.90657 1.63401 1.02703 1.44702 1.15541 1.22775 0.94412 0.91297 0.99326 1.23082 0.93253 0.98525 1.03192 1.22085 0.88429 0.87395 0.99635 0.90109 1.47660 1.33401 1.33316 1.18897 1.22147 1.04650 0.95556 0.85302 1.20196 0.80951 0.84177 0.82628 1.90689 1.71720 1.51464 1.30559 1.23368 0.99702 1.00170 1.03999 1.85644 1.39594 1.44608 1.23046 1.23197 1.20723 1.18048 1.07305 0.89754 1.26139 0.98285 1.00527 0.94217 1.70190 1.33034 1.41950 1.09648 0.84948 0.77916 0.77081 0.77995 1.19326 1.20418 1.18043 1.23195 0.90367 0.96194 0.98154 1.84378 1.18031 1.37407 1.70018 0.88676 0.86786 0.89560 0.78098 0.88937 0.85765 0.91499 0.90635 0.90787 0.88403 0.90564 0.90235 0.88198 0.87181 0.87220 0.92033 0.89679 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.43 71.24 0.74 0.39 16 2 C -0.05 -0.69 7.39 24.79 0.18 -0.50 16 3 C -0.07 -1.18 11.80 83.40 0.98 -0.20 16 4 N -0.50 -11.49 11.29 -303.83 -3.43 -14.92 16 5 C 0.18 3.62 7.25 88.34 0.64 4.26 16 6 C 0.15 2.19 5.17 85.56 0.44 2.63 16 7 N -0.54 -9.76 5.15 -890.13 -4.58 -14.34 16 8 C 0.05 0.83 6.42 86.65 0.56 1.39 16 9 C -0.14 -2.46 6.50 31.77 0.21 -2.25 16 10 C 0.13 3.02 3.45 46.38 0.16 3.18 16 11 H 0.08 2.54 7.01 -2.39 -0.02 2.52 16 12 N -0.60 -15.18 2.91 -814.87 -2.37 -17.55 16 13 C 0.06 1.00 8.92 127.77 1.14 2.14 16 14 C 0.53 19.87 7.69 87.66 0.67 20.54 16 15 O -0.57 -26.83 15.24 -3.04 -0.05 -26.88 16 16 C -0.12 -4.76 4.71 71.24 0.34 -4.42 16 17 S -0.16 -8.70 20.57 -56.49 -1.16 -9.86 16 18 C -0.54 -30.93 9.50 67.96 0.65 -30.28 16 19 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.74 5.49 84.86 0.47 1.20 16 21 N -0.91 -56.13 13.22 21.65 0.29 -55.85 16 22 Si 1.00 43.30 29.55 68.60 2.03 45.32 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 26 C 0.05 0.88 6.25 86.77 0.54 1.42 16 27 O -0.21 -3.85 10.40 -3.73 -0.04 -3.89 16 28 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.11 0.12 8.14 -2.38 -0.02 0.10 16 30 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.09 0.85 7.96 -2.38 -0.02 0.84 16 33 H 0.12 1.62 8.07 -2.39 -0.02 1.60 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 1.05 6.98 -2.39 -0.02 1.04 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.10 1.26 6.30 -2.39 -0.02 1.25 16 38 H 0.08 0.95 8.09 -2.38 -0.02 0.93 16 39 H 0.08 1.27 6.44 -2.39 -0.02 1.25 16 40 H 0.10 0.94 6.32 -2.38 -0.02 0.92 16 41 H 0.11 3.85 7.40 -2.39 -0.02 3.84 16 42 H 0.11 3.86 8.11 -2.40 -0.02 3.84 16 43 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 44 H 0.09 1.06 6.72 -2.39 -0.02 1.05 16 45 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -83.50 383.07 -0.60 -84.10 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.00 Total: 14.36 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 7.72 Total: -0.51 kcal Atomic # 7 Polarization: -92.56 SS G_CDS: -10.10 Total: -102.65 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.09 Total: -30.76 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -83.50 -0.60 -84.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698557912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.188 kcal (2) G-P(sol) polarization free energy of solvation -83.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds