Wall clock time and date at job start Tue Mar 31 2020 22:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30255 * 125.61640 * 2 1 4 4 C 1.34478 * 108.69885 * 179.97438 * 3 2 1 5 5 C 1.50710 * 126.16204 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47002 * 90.02197 * 5 4 3 7 7 C 1.46906 * 110.99658 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46794 * 180.02562 * 7 6 5 9 9 C 1.30994 * 119.99826 * 125.27501 * 8 7 6 10 10 C 1.50702 * 120.00204 * 179.71900 * 9 8 7 11 11 N 1.46500 * 109.46883 * 124.99760 * 10 9 8 12 12 C 1.34779 * 119.99594 * 180.02562 * 11 10 9 13 13 O 1.21284 * 120.00485 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.00077 * 180.02562 * 12 11 10 15 15 S 1.80994 * 109.47195 * 180.02562 * 14 12 11 16 16 C 1.76201 * 100.00063 * 180.02562 * 15 14 12 17 17 H 1.08010 * 119.99901 * 359.97438 * 16 15 14 18 18 C 1.38794 * 120.00310 * 180.02562 * 16 15 14 19 19 N 1.31630 * 119.99972 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99942 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47000 * 90.00389 * 20 18 16 22 22 H 1.48504 * 109.46990 * 210.00044 * 20 18 16 23 23 H 1.48499 * 109.47140 * 330.00036 * 20 18 16 24 24 C 1.34326 * 107.67110 * 0.25759 * 4 3 2 25 25 C 1.50700 * 126.44284 * 179.73661 * 24 4 3 26 26 O 1.33963 * 125.62260 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46772 * 90.00693 * 1 2 3 28 28 H 1.08998 * 109.47000 * 209.99974 * 1 2 3 29 29 H 1.08993 * 109.47477 * 330.00145 * 1 2 3 30 30 H 1.08999 * 109.46602 * 330.01952 * 5 4 3 31 31 H 1.08997 * 109.46513 * 210.02298 * 5 4 3 32 32 H 1.00892 * 111.00223 * 56.04192 * 6 5 4 33 33 H 1.08998 * 109.47104 * 59.99793 * 7 6 5 34 34 H 1.09001 * 109.46974 * 299.99926 * 7 6 5 35 35 H 1.08002 * 119.99761 * 304.99260 * 8 7 6 36 36 H 1.08002 * 120.00350 * 359.72370 * 9 8 7 37 37 H 1.08998 * 109.47600 * 245.00508 * 10 9 8 38 38 H 1.09004 * 109.46937 * 5.00335 * 10 9 8 39 39 H 0.96999 * 120.00357 * 0.02562 * 11 10 9 40 40 H 1.08998 * 109.47363 * 300.00761 * 14 12 11 41 41 H 1.09004 * 109.46632 * 60.00255 * 14 12 11 42 42 H 0.97000 * 120.00044 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.46985 * 90.00332 * 25 24 4 44 44 H 1.08997 * 109.47106 * 209.99948 * 25 24 4 45 45 H 1.08996 * 109.47082 * 330.00242 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 0.0006 5 6 4.7570 1.5729 0.0013 6 7 5.1481 1.8664 1.3865 7 6 6.3225 2.7480 1.4264 8 6 6.6937 3.0257 2.8604 9 6 7.9095 2.7801 3.2816 10 6 8.2824 3.0637 4.7139 11 7 8.8272 1.8493 5.3262 12 6 9.2303 1.8657 6.6122 13 8 9.1416 2.8855 7.2627 14 6 9.7912 0.6168 7.2420 15 16 10.2376 0.9570 8.9627 16 6 10.8476 -0.6259 9.4393 17 1 10.8569 -1.4379 8.7271 18 6 11.3150 -0.8297 10.7302 19 7 11.7701 -2.0123 11.0863 20 14 11.2981 0.5744 11.9622 21 1 10.0069 0.5737 12.6958 22 1 12.4148 0.4010 12.9256 23 1 11.4591 1.8645 11.2447 24 6 3.5698 -0.6756 -0.0048 25 6 4.7938 -1.5547 -0.0119 26 8 2.2873 -1.0889 0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 4.5129 2.5028 -0.5122 31 1 5.5822 1.0798 -0.5126 32 1 5.3171 1.0159 1.9025 33 1 6.0898 3.6862 0.9227 34 1 7.1584 2.2627 0.9226 35 1 5.9585 3.4315 3.5395 36 1 8.6447 2.3744 2.6024 37 1 9.0324 3.8540 4.7445 38 1 7.3967 3.3819 5.2638 39 1 8.8978 1.0336 4.8061 40 1 9.0417 -0.1740 7.2109 41 1 10.6773 0.2993 6.6923 42 1 12.0971 -2.1547 11.9883 43 1 5.0918 -1.7708 1.0140 44 1 4.5682 -2.4874 -0.5288 45 1 5.6066 -1.0418 -0.5260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699230529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:37 Heat of formation + Delta-G solvation = -4.553723 kcal Electronic energy + Delta-G solvation = -24701.238270 eV Core-core repulsion = 20846.883891 eV Total energy + Delta-G solvation = -3854.354379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.75809 -39.29527 -37.64771 -35.89967 -34.90662 -33.86954 -32.64561 -32.43643 -30.61280 -29.93107 -28.30534 -26.21344 -25.59112 -24.63286 -23.13353 -22.13975 -20.98510 -20.64949 -19.80760 -17.89708 -17.33486 -17.31011 -16.50333 -16.28682 -15.81321 -15.53412 -15.22116 -15.02141 -14.94883 -14.61918 -14.34371 -13.97354 -13.82708 -13.66815 -13.64775 -13.24686 -13.20039 -13.11937 -12.91739 -12.79317 -12.67092 -12.51636 -12.16715 -11.87464 -11.54787 -11.33442 -11.25669 -11.00592 -10.84157 -10.60984 -9.91832 -9.80068 -9.40814 -9.06168 -9.01047 -8.92332 -8.87091 -8.49935 -6.91748 -6.29023 -4.00745 0.98316 1.65744 2.20848 2.22893 2.81479 2.97873 3.33047 3.39774 3.51092 3.51668 3.72259 3.87871 4.21854 4.32788 4.33432 4.42970 4.53736 4.68586 4.72692 4.74690 4.84818 4.88245 4.95643 4.99342 5.02785 5.10129 5.12935 5.20583 5.24455 5.26847 5.38734 5.46851 5.56142 5.63428 5.71914 5.76718 5.87408 6.00927 6.21940 6.29160 6.46654 6.56106 6.87003 7.36718 7.61479 7.94005 8.41232 8.48992 9.17263 10.80170 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.001560 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.723960 B =17938.722489 C =18916.486986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.185 3.815 3 N -0.466 5.466 4 C -0.008 4.008 5 C 0.142 3.858 6 N -0.679 5.679 7 C 0.088 3.912 8 C -0.134 4.134 9 C -0.166 4.166 10 C 0.150 3.850 11 N -0.734 5.734 12 C 0.530 3.470 13 O -0.520 6.520 14 C -0.124 4.124 15 S -0.142 6.142 16 C -0.522 4.522 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C -0.043 4.043 25 C -0.071 4.071 26 O -0.202 6.202 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.344 0.656 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.400 0.600 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.271 0.729 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.876 3.538 -29.360 34.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.022 4.022 3 N -0.195 5.195 4 C -0.128 4.128 5 C 0.013 3.987 6 N -0.311 5.311 7 C -0.040 4.040 8 C -0.154 4.154 9 C -0.185 4.185 10 C 0.027 3.973 11 N -0.388 5.388 12 C 0.316 3.684 13 O -0.394 6.394 14 C -0.274 4.274 15 S 0.084 5.916 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.097 4.097 25 C -0.128 4.128 26 O -0.089 6.089 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.162 0.838 33 H 0.103 0.897 34 H 0.055 0.945 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.233 0.767 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.643 6.237 -28.067 34.267 hybrid contribution 1.137 -2.542 -0.609 2.851 sum -17.505 3.695 -28.676 33.800 Atomic orbital electron populations 1.20258 0.81215 1.05265 1.04621 1.26262 0.96449 0.78507 1.00942 1.70334 1.01495 1.30083 1.17637 1.21239 0.93248 0.91454 1.06878 1.20106 0.90549 0.97734 0.90276 1.60358 1.37262 1.20930 1.12562 1.21028 0.90822 0.97655 0.94496 1.22850 0.96444 0.99313 0.96761 1.22964 0.97199 1.01757 0.96602 1.20272 0.99296 0.87981 0.89756 1.45944 1.66422 1.13840 1.12614 1.20303 0.77003 0.90109 0.81033 1.90704 1.53566 1.33527 1.61629 1.23277 1.03933 0.97994 1.02226 1.84800 1.82089 1.19497 1.05168 1.22321 1.48089 0.95054 1.01475 0.89396 1.24710 0.93339 0.95812 0.97429 1.69938 1.40239 1.21682 1.19844 0.86733 0.78810 0.84188 0.82114 1.19197 1.19932 1.15918 1.23224 0.84073 0.95054 1.07375 1.20322 0.89885 0.98470 1.04120 1.84385 1.16475 1.37871 1.70200 0.88984 0.89330 0.87991 0.89099 0.93362 0.83780 0.89725 0.94456 0.86204 0.86767 0.90739 0.91105 0.76653 0.88506 0.88456 0.91947 0.89446 0.90089 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.01 0.38 0.14 16 2 C 0.19 1.63 8.34 -12.95 -0.11 1.52 16 3 N -0.47 -5.03 11.29 -7.35 -0.08 -5.11 16 4 C -0.01 -0.07 6.62 -82.81 -0.55 -0.62 16 5 C 0.14 1.02 6.02 -4.97 -0.03 0.99 16 6 N -0.68 -5.15 6.48 -116.33 -0.75 -5.90 16 7 C 0.09 0.56 6.13 -4.97 -0.03 0.53 16 8 C -0.13 -1.01 9.38 -36.02 -0.34 -1.35 16 9 C -0.17 -1.29 9.24 -36.02 -0.33 -1.62 16 10 C 0.15 1.65 6.11 -5.19 -0.03 1.62 16 11 N -0.73 -9.20 5.55 -61.47 -0.34 -9.55 16 12 C 0.53 9.41 7.85 -10.98 -0.09 9.32 16 13 O -0.52 -11.31 15.86 5.55 0.09 -11.22 16 14 C -0.12 -2.38 6.16 36.01 0.22 -2.16 16 15 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 16 C -0.52 -15.05 10.04 30.94 0.31 -14.74 16 17 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 18 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 19 N -0.88 -26.56 13.97 55.49 0.78 -25.78 16 20 Si 0.86 21.85 27.74 -169.99 -4.71 17.13 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 24 C -0.04 -0.36 7.39 -35.69 -0.26 -0.62 16 25 C -0.07 -0.32 10.22 36.01 0.37 0.04 16 26 O -0.20 -1.88 10.77 5.37 0.06 -1.82 16 27 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.24 7.16 -51.93 -0.37 -0.13 16 32 H 0.34 2.50 8.71 -39.30 -0.34 2.16 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.04 0.20 7.79 -51.93 -0.40 -0.21 16 35 H 0.12 1.02 7.84 -52.49 -0.41 0.61 16 36 H 0.11 0.73 7.84 -52.49 -0.41 0.32 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.85 7.79 -51.93 -0.40 0.45 16 39 H 0.40 3.83 8.46 -40.82 -0.35 3.49 16 40 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 41 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 42 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.09 0.27 7.16 -51.93 -0.37 -0.10 16 LS Contribution 401.19 15.07 6.05 6.05 Total: -1.00 -37.05 401.19 -8.37 -45.43 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.87 Total: 0.62 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -0.59 Total: -4.23 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.40 Total: -46.34 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.15 Total: -13.04 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.05 -8.37 -45.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699230529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.873 kcal (2) G-P(sol) polarization free energy of solvation -37.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds