Wall clock time and date at job start Tue Mar 31 2020 22:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30255 * 125.61640 * 2 1 4 4 C 1.34478 * 108.69885 * 179.97438 * 3 2 1 5 5 C 1.50710 * 126.16204 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47002 * 90.02197 * 5 4 3 7 7 C 1.46906 * 110.99658 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46794 * 180.02562 * 7 6 5 9 9 C 1.30994 * 119.99826 * 125.27501 * 8 7 6 10 10 C 1.50702 * 120.00204 * 179.71900 * 9 8 7 11 11 N 1.46500 * 109.46883 * 124.99760 * 10 9 8 12 12 C 1.34779 * 119.99594 * 180.02562 * 11 10 9 13 13 O 1.21284 * 120.00485 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.00077 * 180.02562 * 12 11 10 15 15 S 1.80994 * 109.47195 * 180.02562 * 14 12 11 16 16 C 1.76201 * 100.00063 * 180.02562 * 15 14 12 17 17 H 1.08010 * 119.99901 * 359.97438 * 16 15 14 18 18 C 1.38794 * 120.00310 * 180.02562 * 16 15 14 19 19 N 1.31630 * 119.99972 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99942 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47000 * 90.00389 * 20 18 16 22 22 H 1.48504 * 109.46990 * 210.00044 * 20 18 16 23 23 H 1.48499 * 109.47140 * 330.00036 * 20 18 16 24 24 C 1.34326 * 107.67110 * 0.25759 * 4 3 2 25 25 C 1.50700 * 126.44284 * 179.73661 * 24 4 3 26 26 O 1.33963 * 125.62260 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46772 * 90.00693 * 1 2 3 28 28 H 1.08998 * 109.47000 * 209.99974 * 1 2 3 29 29 H 1.08993 * 109.47477 * 330.00145 * 1 2 3 30 30 H 1.08999 * 109.46602 * 330.01952 * 5 4 3 31 31 H 1.08997 * 109.46513 * 210.02298 * 5 4 3 32 32 H 1.00892 * 111.00223 * 56.04192 * 6 5 4 33 33 H 1.08998 * 109.47104 * 59.99793 * 7 6 5 34 34 H 1.09001 * 109.46974 * 299.99926 * 7 6 5 35 35 H 1.08002 * 119.99761 * 304.99260 * 8 7 6 36 36 H 1.08002 * 120.00350 * 359.72370 * 9 8 7 37 37 H 1.08998 * 109.47600 * 245.00508 * 10 9 8 38 38 H 1.09004 * 109.46937 * 5.00335 * 10 9 8 39 39 H 0.96999 * 120.00357 * 0.02562 * 11 10 9 40 40 H 1.08998 * 109.47363 * 300.00761 * 14 12 11 41 41 H 1.09004 * 109.46632 * 60.00255 * 14 12 11 42 42 H 0.97000 * 120.00044 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.46985 * 90.00332 * 25 24 4 44 44 H 1.08997 * 109.47106 * 209.99948 * 25 24 4 45 45 H 1.08996 * 109.47082 * 330.00242 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 0.0006 5 6 4.7570 1.5729 0.0013 6 7 5.1481 1.8664 1.3865 7 6 6.3225 2.7480 1.4264 8 6 6.6937 3.0257 2.8604 9 6 7.9095 2.7801 3.2816 10 6 8.2824 3.0637 4.7139 11 7 8.8272 1.8493 5.3262 12 6 9.2303 1.8657 6.6122 13 8 9.1416 2.8855 7.2627 14 6 9.7912 0.6168 7.2420 15 16 10.2376 0.9570 8.9627 16 6 10.8476 -0.6259 9.4393 17 1 10.8569 -1.4379 8.7271 18 6 11.3150 -0.8297 10.7302 19 7 11.7701 -2.0123 11.0863 20 14 11.2981 0.5744 11.9622 21 1 10.0069 0.5737 12.6958 22 1 12.4148 0.4010 12.9256 23 1 11.4591 1.8645 11.2447 24 6 3.5698 -0.6756 -0.0048 25 6 4.7938 -1.5547 -0.0119 26 8 2.2873 -1.0889 0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 4.5129 2.5028 -0.5122 31 1 5.5822 1.0798 -0.5126 32 1 5.3171 1.0159 1.9025 33 1 6.0898 3.6862 0.9227 34 1 7.1584 2.2627 0.9226 35 1 5.9585 3.4315 3.5395 36 1 8.6447 2.3744 2.6024 37 1 9.0324 3.8540 4.7445 38 1 7.3967 3.3819 5.2638 39 1 8.8978 1.0336 4.8061 40 1 9.0417 -0.1740 7.2109 41 1 10.6773 0.2993 6.6923 42 1 12.0971 -2.1547 11.9883 43 1 5.0918 -1.7708 1.0140 44 1 4.5682 -2.4874 -0.5288 45 1 5.6066 -1.0418 -0.5260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699230529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:37 Heat of formation + Delta-G solvation = -34.307854 kcal Electronic energy + Delta-G solvation = -24702.528506 eV Core-core repulsion = 20846.883891 eV Total energy + Delta-G solvation = -3855.644615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.36076 -40.64934 -38.25231 -36.74959 -35.66232 -34.67445 -34.54901 -33.41030 -31.22085 -30.97997 -29.09386 -27.86486 -26.88755 -25.20361 -23.79943 -22.74869 -21.90197 -21.55504 -20.62887 -19.81062 -18.00902 -17.92325 -17.83365 -17.36688 -17.06848 -16.71141 -16.55969 -15.84975 -15.74486 -15.57310 -15.23486 -15.03364 -14.91307 -14.70681 -14.39283 -14.28243 -14.09719 -13.76688 -13.55808 -13.45387 -13.34381 -13.30557 -13.10712 -13.05978 -12.99209 -12.75359 -12.62343 -12.19750 -11.98091 -11.85438 -11.48491 -11.17011 -11.12030 -10.53431 -10.39919 -9.99590 -9.59397 -9.38919 -8.99561 -8.51407 -6.22224 0.40118 0.90330 1.09591 1.31662 1.47997 1.56121 1.57164 1.60971 1.72171 2.24832 2.38440 2.74300 2.86935 3.03127 3.34384 3.72144 3.77451 3.82050 3.90614 4.09522 4.15498 4.23627 4.32983 4.38464 4.45279 4.47424 4.55698 4.60592 4.61884 4.64142 4.65521 4.79111 4.82495 4.86873 4.88474 5.07618 5.18501 5.33980 5.34922 5.60821 5.70922 5.72668 5.97693 6.11529 6.35485 6.48159 6.75989 6.93973 7.19411 8.60854 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.001560 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.723960 B =17938.722489 C =18916.486986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.176 3.824 3 N -0.505 5.505 4 C -0.030 4.030 5 C 0.148 3.852 6 N -0.694 5.694 7 C 0.093 3.907 8 C -0.127 4.127 9 C -0.159 4.159 10 C 0.149 3.851 11 N -0.707 5.707 12 C 0.533 3.467 13 O -0.565 6.565 14 C -0.110 4.110 15 S -0.179 6.179 16 C -0.529 4.529 17 H 0.063 0.937 18 C 0.046 3.954 19 N -0.916 5.916 20 Si 0.914 3.086 21 H -0.263 1.263 22 H -0.259 1.259 23 H -0.237 1.237 24 C -0.049 4.049 25 C -0.070 4.070 26 O -0.215 6.215 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.345 0.655 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.106 0.894 36 H 0.138 0.862 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.418 0.582 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.277 0.723 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.031 3.651 -31.037 36.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.031 4.031 3 N -0.235 5.235 4 C -0.150 4.150 5 C 0.019 3.981 6 N -0.326 5.326 7 C -0.035 4.035 8 C -0.146 4.146 9 C -0.178 4.178 10 C 0.026 3.974 11 N -0.361 5.361 12 C 0.318 3.682 13 O -0.444 6.444 14 C -0.261 4.261 15 S 0.048 5.952 16 C -0.677 4.677 17 H 0.082 0.918 18 C -0.159 4.159 19 N -0.554 5.554 20 Si 0.736 3.264 21 H -0.188 1.188 22 H -0.183 1.183 23 H -0.161 1.161 24 C -0.103 4.103 25 C -0.126 4.126 26 O -0.103 6.103 27 H 0.128 0.872 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.164 0.836 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.156 0.844 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.255 0.745 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.086 0.914 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.800 6.325 -29.800 35.798 hybrid contribution 1.086 -2.605 -0.258 2.834 sum -17.714 3.720 -30.058 35.088 Atomic orbital electron populations 1.20478 0.78618 1.06164 1.06006 1.27115 0.97881 0.78112 0.99951 1.70324 1.02665 1.31326 1.19184 1.21626 0.93387 0.92357 1.07602 1.20103 0.90590 0.97256 0.90153 1.60306 1.38040 1.21269 1.13028 1.21002 0.91137 0.97763 0.93587 1.22855 0.96000 0.98457 0.97319 1.22790 0.97742 1.02491 0.94801 1.20355 0.98509 0.86991 0.91527 1.45718 1.64235 1.15334 1.10842 1.20008 0.77055 0.88720 0.82371 1.90694 1.55865 1.34726 1.63109 1.23268 1.05372 0.99493 0.97983 1.84747 1.82232 1.17639 1.10597 1.22464 1.47924 0.95987 1.01281 0.91832 1.25546 0.93082 0.98040 0.99239 1.70013 1.41244 1.23414 1.20740 0.85878 0.79368 0.81146 0.80047 1.18778 1.18285 1.16130 1.23878 0.84562 0.95428 1.06419 1.20498 0.88778 0.98399 1.04950 1.84396 1.17172 1.38297 1.70443 0.87247 0.87756 0.87665 0.90010 0.90898 0.83636 0.89624 0.92386 0.87613 0.84404 0.91298 0.92326 0.74495 0.86816 0.86578 0.91374 0.88678 0.89367 0.87289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 71.24 0.75 0.32 16 2 C 0.18 3.07 8.34 88.34 0.74 3.81 16 3 N -0.50 -10.94 11.29 -291.98 -3.30 -14.24 16 4 C -0.03 -0.54 6.62 41.26 0.27 -0.27 16 5 C 0.15 1.90 6.02 85.56 0.52 2.42 16 6 N -0.69 -9.36 6.48 -521.96 -3.38 -12.74 16 7 C 0.09 0.95 6.13 85.56 0.52 1.48 16 8 C -0.13 -1.63 9.38 25.65 0.24 -1.39 16 9 C -0.16 -2.01 9.24 25.65 0.24 -1.77 16 10 C 0.15 3.00 6.11 85.63 0.52 3.52 16 11 N -0.71 -16.03 5.55 -466.77 -2.59 -18.62 16 12 C 0.53 18.11 7.85 87.66 0.69 18.80 16 13 O -0.57 -24.30 15.86 -3.04 -0.05 -24.35 16 14 C -0.11 -4.08 6.16 71.24 0.44 -3.64 16 15 S -0.18 -9.03 18.55 -56.49 -1.05 -10.08 16 16 C -0.53 -30.71 10.04 67.95 0.68 -30.03 16 17 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 18 C 0.05 2.72 5.50 84.86 0.47 3.19 16 19 N -0.92 -55.62 13.97 21.65 0.30 -55.31 16 20 Si 0.91 45.07 27.74 68.60 1.90 46.97 16 21 H -0.26 -12.69 7.11 99.48 0.71 -11.99 16 22 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.24 -11.71 6.74 99.48 0.67 -11.04 16 24 C -0.05 -0.76 7.39 24.79 0.18 -0.58 16 25 C -0.07 -0.49 10.22 71.24 0.73 0.24 16 26 O -0.21 -3.91 10.77 -3.69 -0.04 -3.95 16 27 H 0.11 0.44 8.14 -2.39 -0.02 0.43 16 28 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 31 H 0.07 0.54 7.16 -2.39 -0.02 0.53 16 32 H 0.35 4.38 8.71 -89.70 -0.78 3.60 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.38 7.79 -2.39 -0.02 0.37 16 35 H 0.11 1.69 7.84 -2.91 -0.02 1.66 16 36 H 0.14 1.17 7.84 -2.91 -0.02 1.15 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 1.36 7.79 -2.38 -0.02 1.34 16 39 H 0.42 6.57 8.46 -92.71 -0.78 5.78 16 40 H 0.11 3.84 8.14 -2.40 -0.02 3.83 16 41 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 42 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.11 0.34 7.16 -2.39 -0.02 0.32 16 Total: -1.00 -81.57 401.19 -1.80 -83.38 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -0.59 Total: 12.87 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 6.99 Total: -3.92 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -8.97 Total: -100.91 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.09 Total: -28.30 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.90 Total: 46.97 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.08 kcal Total: -81.57 -1.80 -83.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699230529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.069 kcal (2) G-P(sol) polarization free energy of solvation -81.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds