Wall clock time and date at job start Tue Mar 31 2020 22:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35447 * 128.01115 * 2 1 4 4 O 1.34040 * 106.44545 * 179.97438 * 3 2 1 5 5 N 1.20916 * 111.56872 * 359.70986 * 4 3 2 6 6 C 1.30178 * 111.60406 * 0.48212 * 5 4 3 7 7 C 1.50699 * 126.80403 * 179.79449 * 6 5 4 8 8 N 1.46904 * 109.47227 * 269.69043 * 7 6 5 9 9 C 1.48553 * 111.00004 * 290.12717 * 8 7 6 10 10 C 1.54381 * 104.59389 * 200.95997 * 9 8 7 11 11 C 1.54260 * 105.06213 * 23.85245 * 10 9 8 12 12 C 1.52997 * 110.32807 * 118.89636 * 11 10 9 13 13 N 1.46505 * 110.32460 * 241.00411 * 11 10 9 14 14 C 1.34776 * 119.99874 * 297.17333 * 13 11 10 15 15 O 1.21282 * 119.99694 * 359.97438 * 14 13 11 16 16 C 1.50702 * 119.99997 * 179.97438 * 14 13 11 17 17 S 1.81001 * 109.47040 * 179.97438 * 16 14 13 18 18 C 1.76194 * 99.99885 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00456 * 359.97438 * 18 17 16 20 20 C 1.38804 * 119.99784 * 180.02562 * 18 17 16 21 21 N 1.31632 * 119.99563 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00157 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47031 * 90.00112 * 22 20 18 24 24 H 1.48503 * 109.47048 * 210.00017 * 22 20 18 25 25 H 1.48498 * 109.46938 * 330.00191 * 22 20 18 26 26 C 1.48558 * 111.00099 * 174.70291 * 8 7 6 27 27 H 1.08990 * 109.47398 * 270.04438 * 1 2 3 28 28 H 1.09008 * 109.46674 * 30.04321 * 1 2 3 29 29 H 1.09004 * 109.46981 * 150.03806 * 1 2 3 30 30 H 1.08003 * 126.77574 * 359.97438 * 3 2 1 31 31 H 1.08997 * 109.47227 * 149.69222 * 7 6 5 32 32 H 1.09009 * 109.47045 * 29.68700 * 7 6 5 33 33 H 1.08996 * 110.41658 * 82.17727 * 9 8 7 34 34 H 1.09004 * 110.51228 * 319.78094 * 9 8 7 35 35 H 1.09002 * 110.32600 * 264.95521 * 10 9 8 36 36 H 1.09002 * 110.41100 * 142.78805 * 10 9 8 37 37 H 1.09002 * 109.47153 * 61.45300 * 12 11 10 38 38 H 1.09001 * 109.46832 * 301.45491 * 12 11 10 39 39 H 1.09004 * 109.47261 * 181.45472 * 12 11 10 40 40 H 0.97000 * 120.00378 * 117.16250 * 13 11 10 41 41 H 1.09000 * 109.46558 * 299.99542 * 16 14 13 42 42 H 1.08999 * 109.46703 * 59.99540 * 16 14 13 43 43 H 0.97006 * 119.99824 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.40899 * 40.26303 * 26 8 7 45 45 H 1.09006 * 110.41652 * 277.82320 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3412 1.0672 0.0000 4 8 3.5877 0.5745 0.0006 5 7 3.5878 -0.6347 0.0066 6 6 2.3775 -1.1141 0.0006 7 6 1.9825 -2.5684 0.0008 8 7 1.8547 -3.0413 -1.3841 9 6 0.6697 -2.4372 -2.0457 10 6 0.3550 -3.3861 -3.2220 11 6 0.9607 -4.7449 -2.8140 12 6 -0.1347 -5.8091 -2.7223 13 7 1.9871 -5.1540 -3.7761 14 6 1.6520 -5.3873 -5.0605 15 8 0.5007 -5.2590 -5.4197 16 6 2.7079 -5.8076 -6.0503 17 16 1.9503 -6.0429 -7.6772 18 6 3.3683 -6.5169 -8.6093 19 1 4.3332 -6.5827 -8.1288 20 6 3.2454 -6.8048 -9.9616 21 7 4.3049 -7.1584 -10.6581 22 14 1.5766 -6.6903 -10.7930 23 1 1.3801 -5.3166 -11.3217 24 1 1.5130 -7.6650 -11.9117 25 1 0.5101 -6.9984 -9.8068 26 6 1.5905 -4.5026 -1.4255 27 1 -0.3633 0.0008 1.0275 28 1 -0.3633 0.8897 -0.5146 29 1 -0.3633 -0.8904 -0.5133 30 1 2.0578 2.1094 -0.0004 31 1 1.0282 -2.6856 0.5143 32 1 2.7461 -3.1522 0.5151 33 1 0.9078 -1.4397 -2.4151 34 1 -0.1730 -2.3950 -1.3555 35 1 0.8226 -3.0228 -4.1372 36 1 -0.7225 -3.4778 -3.3587 37 1 -0.6044 -5.9320 -3.6982 38 1 -0.8843 -5.4972 -1.9950 39 1 0.3042 -6.7562 -2.4084 40 1 2.9078 -5.2568 -3.4887 41 1 3.4740 -5.0348 -6.1142 42 1 3.1615 -6.7428 -5.7223 43 1 4.2190 -7.3599 -11.6031 44 1 0.8928 -4.7852 -0.6371 45 1 2.5219 -5.0603 -1.3279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699808065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:25 Heat of formation + Delta-G solvation = 35.300359 kcal Electronic energy + Delta-G solvation = -26989.800195 eV Core-core repulsion = 23137.174019 eV Total energy + Delta-G solvation = -3852.626176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.24910 -40.44080 -38.48786 -35.89963 -34.22264 -32.80166 -32.41710 -31.67639 -30.06988 -28.60029 -28.52931 -27.72317 -25.59421 -24.99501 -22.50663 -21.96013 -21.22782 -20.95973 -19.37603 -17.95575 -17.90386 -17.72903 -16.69415 -16.37926 -15.73864 -15.40782 -15.21493 -14.96259 -14.94878 -14.39070 -14.04116 -13.73408 -13.65989 -13.43735 -13.24206 -13.15849 -12.88732 -12.81734 -12.75526 -12.49411 -12.22076 -12.05607 -11.96029 -11.58112 -11.25109 -11.20974 -11.13496 -10.99717 -10.92119 -10.56956 -10.33286 -9.83739 -9.71710 -9.33378 -9.01213 -8.97189 -8.82928 -8.47696 -6.88938 -6.26882 -3.98114 1.18292 1.80234 2.79186 2.94212 3.01738 3.31821 3.35397 3.51232 3.58327 3.67958 3.77766 4.12405 4.19327 4.34665 4.45356 4.51025 4.66958 4.77180 4.78527 4.86213 4.90044 5.08707 5.11074 5.12150 5.13982 5.21977 5.24785 5.29969 5.33397 5.37823 5.48748 5.53951 5.62132 5.71649 5.76877 5.81191 5.85840 6.06211 6.11576 6.21072 6.41908 6.50553 6.71634 7.70517 7.96332 7.97568 8.44401 8.56182 9.19284 10.82467 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018605 B = 0.002284 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.582589 B =12256.338440 C =12774.673645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.197 4.197 3 C -0.066 4.066 4 O 0.102 5.898 5 N -0.346 5.346 6 C 0.026 3.974 7 C 0.122 3.878 8 N -0.501 5.501 9 C 0.031 3.969 10 C -0.123 4.123 11 C 0.178 3.822 12 C -0.160 4.160 13 N -0.722 5.722 14 C 0.534 3.466 15 O -0.517 6.517 16 C -0.124 4.124 17 S -0.141 6.141 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.235 1.235 26 C 0.033 3.967 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.215 0.785 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.400 0.600 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.270 0.730 44 H 0.062 0.938 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.619 13.381 27.335 31.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.202 4.202 3 C -0.147 4.147 4 O 0.035 5.965 5 N -0.049 5.049 6 C -0.134 4.134 7 C -0.006 4.006 8 N -0.226 5.226 9 C -0.096 4.096 10 C -0.162 4.162 11 C 0.091 3.909 12 C -0.219 4.219 13 N -0.377 5.377 14 C 0.320 3.680 15 O -0.392 6.392 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.114 4.114 21 N -0.518 5.518 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.095 4.095 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.231 0.769 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.235 0.765 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.721 13.118 26.318 30.672 hybrid contribution -0.144 -0.070 0.400 0.431 sum -8.865 13.048 26.718 31.027 Atomic orbital electron populations 1.20296 0.87548 1.03783 1.02698 1.21321 0.98599 0.91738 1.08504 1.25762 0.83267 1.01138 1.04518 1.84850 1.29048 1.15609 1.67012 1.73867 1.22266 0.91113 1.17634 1.23189 0.88585 0.97759 1.03822 1.20447 1.01163 0.88156 0.90855 1.65389 1.38829 1.04404 1.14005 1.23345 0.90915 0.99405 0.95955 1.22719 1.01631 0.93384 0.98456 1.20854 0.88442 0.94313 0.87276 1.22233 0.97670 0.97786 1.04190 1.46085 1.11430 1.71461 1.08707 1.20203 0.89723 0.76078 0.81988 1.90653 1.20209 1.50207 1.78118 1.23289 1.00589 1.04746 0.98882 1.84721 1.16437 1.89860 1.00489 1.22330 0.94478 1.53106 0.96913 0.89421 1.24724 0.97155 0.93313 0.96192 1.69945 1.28963 1.44278 1.08573 0.86725 0.85038 0.79085 0.80928 1.19247 1.19996 1.15929 1.23413 1.00988 0.89083 0.96047 0.90935 0.90793 0.90561 0.76891 0.92128 0.88806 0.90069 0.93276 0.90012 0.90204 0.89500 0.92183 0.92402 0.76492 0.88606 0.88603 0.91974 0.91979 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.42 10.31 36.01 0.37 -0.05 16 2 C -0.20 -1.46 5.97 -104.42 -0.62 -2.09 16 3 C -0.07 -0.43 12.26 29.74 0.36 -0.07 16 4 O 0.10 1.00 11.20 17.18 0.19 1.19 16 5 N -0.35 -4.00 12.07 33.42 0.40 -3.60 16 6 C 0.03 0.25 6.40 -82.10 -0.53 -0.27 16 7 C 0.12 1.00 5.32 -4.97 -0.03 0.98 16 8 N -0.50 -4.74 5.36 -231.41 -1.24 -5.98 16 9 C 0.03 0.29 4.77 -2.19 -0.01 0.28 16 10 C -0.12 -1.41 5.53 -25.35 -0.14 -1.55 16 11 C 0.18 1.95 1.01 -130.44 -0.13 1.82 16 12 C -0.16 -1.75 8.14 37.16 0.30 -1.45 16 13 N -0.72 -9.29 5.09 -46.33 -0.24 -9.53 16 14 C 0.53 9.25 7.03 -10.98 -0.08 9.18 16 15 O -0.52 -10.45 13.16 5.56 0.07 -10.38 16 16 C -0.12 -2.43 6.16 36.01 0.22 -2.20 16 17 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 18 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 19 H 0.09 2.67 8.03 -52.49 -0.42 2.24 16 20 C 0.09 2.79 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.83 13.97 55.49 0.78 -26.06 16 22 Si 0.86 21.91 27.74 -169.99 -4.71 17.20 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 26 C 0.03 0.28 5.69 -2.18 -0.01 0.26 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 29 H 0.08 0.39 5.00 -51.93 -0.26 0.13 16 30 H 0.21 0.49 8.06 -52.48 -0.42 0.07 16 31 H 0.06 0.38 7.88 -51.93 -0.41 -0.03 16 32 H 0.09 0.75 8.13 -51.92 -0.42 0.33 16 33 H 0.08 0.82 8.02 -51.93 -0.42 0.40 16 34 H 0.05 0.36 5.93 -51.93 -0.31 0.05 16 35 H 0.08 1.18 7.41 -51.93 -0.38 0.79 16 36 H 0.08 0.90 7.71 -51.93 -0.40 0.49 16 37 H 0.09 1.24 6.21 -51.93 -0.32 0.91 16 38 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.40 4.36 8.28 -40.82 -0.34 4.02 16 41 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 42 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 43 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.06 0.42 7.70 -51.93 -0.40 0.02 16 45 H 0.09 0.72 7.76 -51.93 -0.40 0.32 16 LS Contribution 375.48 15.07 5.66 5.66 Total: -1.00 -35.19 375.48 -7.75 -42.95 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.60 Total: 1.42 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -0.07 Total: -7.29 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: -0.30 Total: -45.17 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.27 Total: -9.19 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.20 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.19 -7.75 -42.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699808065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.248 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds