Wall clock time and date at job start Tue Mar 31 2020 22:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35447 * 128.01115 * 2 1 4 4 O 1.34040 * 106.44545 * 179.97438 * 3 2 1 5 5 N 1.20916 * 111.56872 * 359.70986 * 4 3 2 6 6 C 1.30178 * 111.60406 * 0.48212 * 5 4 3 7 7 C 1.50699 * 126.80403 * 179.79449 * 6 5 4 8 8 N 1.46904 * 109.47227 * 269.69043 * 7 6 5 9 9 C 1.48553 * 111.00004 * 290.12717 * 8 7 6 10 10 C 1.54381 * 104.59389 * 200.95997 * 9 8 7 11 11 C 1.54260 * 105.06213 * 23.85245 * 10 9 8 12 12 C 1.52997 * 110.32807 * 118.89636 * 11 10 9 13 13 N 1.46505 * 110.32460 * 241.00411 * 11 10 9 14 14 C 1.34776 * 119.99874 * 297.17333 * 13 11 10 15 15 O 1.21282 * 119.99694 * 359.97438 * 14 13 11 16 16 C 1.50702 * 119.99997 * 179.97438 * 14 13 11 17 17 S 1.81001 * 109.47040 * 179.97438 * 16 14 13 18 18 C 1.76194 * 99.99885 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00456 * 359.97438 * 18 17 16 20 20 C 1.38804 * 119.99784 * 180.02562 * 18 17 16 21 21 N 1.31632 * 119.99563 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00157 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47031 * 90.00112 * 22 20 18 24 24 H 1.48503 * 109.47048 * 210.00017 * 22 20 18 25 25 H 1.48498 * 109.46938 * 330.00191 * 22 20 18 26 26 C 1.48558 * 111.00099 * 174.70291 * 8 7 6 27 27 H 1.08990 * 109.47398 * 270.04438 * 1 2 3 28 28 H 1.09008 * 109.46674 * 30.04321 * 1 2 3 29 29 H 1.09004 * 109.46981 * 150.03806 * 1 2 3 30 30 H 1.08003 * 126.77574 * 359.97438 * 3 2 1 31 31 H 1.08997 * 109.47227 * 149.69222 * 7 6 5 32 32 H 1.09009 * 109.47045 * 29.68700 * 7 6 5 33 33 H 1.08996 * 110.41658 * 82.17727 * 9 8 7 34 34 H 1.09004 * 110.51228 * 319.78094 * 9 8 7 35 35 H 1.09002 * 110.32600 * 264.95521 * 10 9 8 36 36 H 1.09002 * 110.41100 * 142.78805 * 10 9 8 37 37 H 1.09002 * 109.47153 * 61.45300 * 12 11 10 38 38 H 1.09001 * 109.46832 * 301.45491 * 12 11 10 39 39 H 1.09004 * 109.47261 * 181.45472 * 12 11 10 40 40 H 0.97000 * 120.00378 * 117.16250 * 13 11 10 41 41 H 1.09000 * 109.46558 * 299.99542 * 16 14 13 42 42 H 1.08999 * 109.46703 * 59.99540 * 16 14 13 43 43 H 0.97006 * 119.99824 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.40899 * 40.26303 * 26 8 7 45 45 H 1.09006 * 110.41652 * 277.82320 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3412 1.0672 0.0000 4 8 3.5877 0.5745 0.0006 5 7 3.5878 -0.6347 0.0066 6 6 2.3775 -1.1141 0.0006 7 6 1.9825 -2.5684 0.0008 8 7 1.8547 -3.0413 -1.3841 9 6 0.6697 -2.4372 -2.0457 10 6 0.3550 -3.3861 -3.2220 11 6 0.9607 -4.7449 -2.8140 12 6 -0.1347 -5.8091 -2.7223 13 7 1.9871 -5.1540 -3.7761 14 6 1.6520 -5.3873 -5.0605 15 8 0.5007 -5.2590 -5.4197 16 6 2.7079 -5.8076 -6.0503 17 16 1.9503 -6.0429 -7.6772 18 6 3.3683 -6.5169 -8.6093 19 1 4.3332 -6.5827 -8.1288 20 6 3.2454 -6.8048 -9.9616 21 7 4.3049 -7.1584 -10.6581 22 14 1.5766 -6.6903 -10.7930 23 1 1.3801 -5.3166 -11.3217 24 1 1.5130 -7.6650 -11.9117 25 1 0.5101 -6.9984 -9.8068 26 6 1.5905 -4.5026 -1.4255 27 1 -0.3633 0.0008 1.0275 28 1 -0.3633 0.8897 -0.5146 29 1 -0.3633 -0.8904 -0.5133 30 1 2.0578 2.1094 -0.0004 31 1 1.0282 -2.6856 0.5143 32 1 2.7461 -3.1522 0.5151 33 1 0.9078 -1.4397 -2.4151 34 1 -0.1730 -2.3950 -1.3555 35 1 0.8226 -3.0228 -4.1372 36 1 -0.7225 -3.4778 -3.3587 37 1 -0.6044 -5.9320 -3.6982 38 1 -0.8843 -5.4972 -1.9950 39 1 0.3042 -6.7562 -2.4084 40 1 2.9078 -5.2568 -3.4887 41 1 3.4740 -5.0348 -6.1142 42 1 3.1615 -6.7428 -5.7223 43 1 4.2190 -7.3599 -11.6031 44 1 0.8928 -4.7852 -0.6371 45 1 2.5219 -5.0603 -1.3279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699808065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:25 Heat of formation + Delta-G solvation = 8.964252 kcal Electronic energy + Delta-G solvation = -26990.942214 eV Core-core repulsion = 23137.174019 eV Total energy + Delta-G solvation = -3853.768195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.87969 -41.46004 -39.57271 -36.68276 -35.06729 -34.67916 -33.53934 -32.66977 -30.96581 -29.93124 -29.00024 -28.40362 -27.85745 -25.78064 -23.24447 -22.54673 -22.33851 -21.64843 -20.44401 -19.87613 -18.57182 -18.44857 -17.79432 -17.64420 -17.09998 -16.54196 -16.35806 -16.29392 -15.85601 -15.58380 -15.06491 -14.98910 -14.76642 -14.29689 -14.20438 -14.01331 -13.95277 -13.81342 -13.48498 -13.34180 -13.29554 -13.06975 -13.01527 -12.98148 -12.69043 -12.60987 -12.37168 -11.99510 -11.90229 -11.86993 -11.76811 -11.17886 -10.99584 -10.73392 -10.54468 -10.23531 -10.09279 -9.52059 -8.99206 -8.52313 -6.22765 0.62906 0.98945 1.21536 1.30883 1.46146 1.56000 1.62152 2.22979 2.27637 2.46567 2.71477 2.85754 2.94906 3.18243 3.38022 3.60520 3.70287 3.90460 3.99608 4.02746 4.13870 4.19138 4.23016 4.30482 4.39568 4.46230 4.55611 4.60762 4.61381 4.71278 4.78265 4.78657 4.81798 4.87671 4.93603 4.99164 5.02616 5.18867 5.32088 5.37080 5.58936 5.69777 5.75425 5.86346 6.10463 6.53437 6.92522 7.25700 7.38052 8.60383 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018605 B = 0.002284 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.582589 B =12256.338440 C =12774.673645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.207 4.207 3 C -0.060 4.060 4 O 0.084 5.916 5 N -0.389 5.389 6 C 0.014 3.986 7 C 0.124 3.876 8 N -0.521 5.521 9 C 0.043 3.957 10 C -0.122 4.122 11 C 0.172 3.828 12 C -0.155 4.155 13 N -0.703 5.703 14 C 0.539 3.461 15 O -0.548 6.548 16 C -0.114 4.114 17 S -0.167 6.167 18 C -0.531 4.531 19 H 0.059 0.941 20 C 0.043 3.957 21 N -0.918 5.918 22 Si 0.917 3.083 23 H -0.263 1.263 24 H -0.259 1.259 25 H -0.235 1.235 26 C 0.042 3.958 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.253 0.747 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.412 0.588 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.277 0.723 44 H 0.090 0.910 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 14.154 29.661 34.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.211 4.211 3 C -0.140 4.140 4 O 0.019 5.981 5 N -0.095 5.095 6 C -0.145 4.145 7 C -0.004 4.004 8 N -0.246 5.246 9 C -0.084 4.084 10 C -0.161 4.161 11 C 0.086 3.914 12 C -0.213 4.213 13 N -0.357 5.357 14 C 0.324 3.676 15 O -0.426 6.426 16 C -0.265 4.265 17 S 0.059 5.941 18 C -0.679 4.679 19 H 0.077 0.923 20 C -0.162 4.162 21 N -0.556 5.556 22 Si 0.739 3.261 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.159 1.159 26 C -0.086 4.086 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.269 0.731 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.249 0.751 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.594 13.906 28.687 33.594 hybrid contribution 0.510 -0.237 -0.182 0.591 sum -10.084 13.669 28.505 33.182 Atomic orbital electron populations 1.20360 0.85630 1.04316 1.03696 1.21692 0.99862 0.91120 1.08462 1.26561 0.82000 1.02814 1.02645 1.84789 1.30657 1.15228 1.67431 1.73857 1.23794 0.92015 1.19819 1.23614 0.88647 0.98989 1.03292 1.20510 1.02312 0.87406 0.90182 1.65339 1.39196 1.04962 1.15103 1.23228 0.91809 0.97982 0.95418 1.22650 1.01316 0.94211 0.97957 1.21105 0.88162 0.94071 0.88045 1.22170 0.98033 0.98158 1.02985 1.45949 1.12728 1.69617 1.07422 1.19774 0.88497 0.76296 0.83037 1.90651 1.21085 1.51980 1.78877 1.23291 1.01198 1.05938 0.96043 1.84576 1.15665 1.89829 1.04013 1.22487 0.94771 1.52948 0.97670 0.92313 1.25613 1.00729 0.92958 0.96883 1.70027 1.31040 1.45283 1.09282 0.85830 0.80550 0.79576 0.80170 1.18730 1.18279 1.15858 1.23390 1.01868 0.88664 0.94657 0.89615 0.89520 0.90739 0.73073 0.89721 0.88822 0.91307 0.90633 0.93574 0.90173 0.93006 0.89417 0.91698 0.75150 0.87820 0.87210 0.91361 0.89206 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.31 71.24 0.73 0.19 16 2 C -0.21 -2.62 5.97 -19.73 -0.12 -2.74 16 3 C -0.06 -0.67 12.26 67.17 0.82 0.15 16 4 O 0.08 1.60 11.20 71.64 0.80 2.40 16 5 N -0.39 -8.86 12.07 -49.56 -0.60 -9.46 16 6 C 0.01 0.25 6.40 43.58 0.28 0.53 16 7 C 0.12 1.73 5.32 85.56 0.46 2.18 16 8 N -0.52 -8.63 5.36 -886.04 -4.75 -13.38 16 9 C 0.04 0.70 4.77 86.45 0.41 1.11 16 10 C -0.12 -2.67 5.53 31.49 0.17 -2.49 16 11 C 0.17 3.43 1.01 4.50 0.00 3.44 16 12 C -0.16 -3.06 8.14 71.98 0.59 -2.47 16 13 N -0.70 -17.21 5.09 -418.87 -2.13 -19.34 16 14 C 0.54 18.45 7.03 87.66 0.62 19.07 16 15 O -0.55 -22.25 13.16 -3.04 -0.04 -22.28 16 16 C -0.11 -4.42 6.16 71.24 0.44 -3.98 16 17 S -0.17 -8.54 18.55 -56.49 -1.05 -9.59 16 18 C -0.53 -31.53 10.04 67.96 0.68 -30.85 16 19 H 0.06 3.70 8.03 -2.91 -0.02 3.68 16 20 C 0.04 2.59 5.50 84.86 0.47 3.05 16 21 N -0.92 -56.80 13.97 21.65 0.30 -56.50 16 22 Si 0.92 45.47 27.74 68.60 1.90 47.38 16 23 H -0.26 -12.71 7.11 99.48 0.71 -12.01 16 24 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 25 H -0.23 -11.54 6.74 99.48 0.67 -10.87 16 26 C 0.04 0.57 5.69 86.45 0.49 1.06 16 27 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.07 0.51 5.00 -2.39 -0.01 0.50 16 30 H 0.25 0.39 8.06 -2.91 -0.02 0.37 16 31 H 0.08 0.75 7.88 -2.39 -0.02 0.73 16 32 H 0.09 1.29 8.13 -2.38 -0.02 1.27 16 33 H 0.07 1.30 8.02 -2.39 -0.02 1.28 16 34 H 0.08 0.83 5.93 -2.38 -0.01 0.82 16 35 H 0.05 1.34 7.41 -2.39 -0.02 1.32 16 36 H 0.08 1.71 7.71 -2.39 -0.02 1.69 16 37 H 0.05 1.43 6.21 -2.39 -0.01 1.42 16 38 H 0.09 1.23 8.12 -2.39 -0.02 1.21 16 39 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.41 8.25 8.28 -92.71 -0.77 7.49 16 41 H 0.10 3.86 8.14 -2.39 -0.02 3.84 16 42 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 43 H 0.28 15.80 8.31 -92.70 -0.77 15.03 16 44 H 0.09 0.80 7.70 -2.39 -0.02 0.78 16 45 H 0.10 1.24 7.76 -2.38 -0.02 1.22 16 Total: -1.00 -78.98 375.48 0.70 -78.28 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.21 Total: 14.25 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 6.05 Total: -11.75 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -7.18 Total: -98.69 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.76 Total: -19.89 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.90 Total: 47.38 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.05 Total: -9.59 kcal Total: -78.98 0.70 -78.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699808065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.248 kcal (2) G-P(sol) polarization free energy of solvation -78.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds