Wall clock time and date at job start Tue Mar 31 2020 22:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41375 * 126.80544 * 2 1 4 4 C 1.35450 * 103.98779 * 180.02562 * 3 2 1 5 5 C 1.50705 * 126.77526 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.46863 * 90.00125 * 5 4 3 7 7 C 1.46895 * 110.99900 * 179.97438 * 6 5 4 8 8 H 1.09000 * 110.29003 * 34.30299 * 7 6 5 9 9 C 1.54001 * 110.33370 * 272.16896 * 7 6 5 10 10 N 1.47488 * 107.08330 * 239.80212 * 9 7 6 11 11 C 1.34777 * 127.03255 * 205.40679 * 10 9 7 12 12 O 1.21289 * 119.99896 * 359.97438 * 11 10 9 13 13 C 1.50692 * 120.00225 * 180.02562 * 11 10 9 14 14 S 1.81000 * 109.47366 * 180.02562 * 13 11 10 15 15 C 1.76198 * 99.99959 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99999 * 359.97438 * 15 14 13 17 17 C 1.38801 * 120.00150 * 180.02562 * 15 14 13 18 18 N 1.31631 * 119.99989 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00112 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47323 * 90.00004 * 19 17 15 21 21 H 1.48500 * 109.47037 * 209.99668 * 19 17 15 22 22 H 1.48496 * 109.47450 * 329.99794 * 19 17 15 23 23 C 1.48110 * 105.93095 * 25.44703 * 10 9 7 24 24 C 1.54614 * 110.32647 * 156.43202 * 7 6 5 25 25 H 1.09003 * 110.74661 * 215.38002 * 24 7 6 26 26 C 1.52993 * 110.74241 * 338.71312 * 24 7 6 27 27 O 1.34034 * 106.44531 * 0.02562 * 4 3 2 28 28 N 1.20925 * 111.56886 * 359.97438 * 27 4 3 29 29 H 1.09005 * 109.46758 * 269.97205 * 1 2 3 30 30 H 1.09001 * 109.46799 * 29.97065 * 1 2 3 31 31 H 1.09000 * 109.47005 * 149.97352 * 1 2 3 32 32 H 1.08002 * 128.00212 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47074 * 210.00158 * 5 4 3 34 34 H 1.09000 * 109.47098 * 330.00306 * 5 4 3 35 35 H 1.00897 * 111.00301 * 303.95686 * 6 5 4 36 36 H 1.08999 * 109.90875 * 359.15962 * 9 7 6 37 37 H 1.09002 * 109.91794 * 120.43649 * 9 7 6 38 38 H 1.09010 * 109.47017 * 300.00261 * 13 11 10 39 39 H 1.08999 * 109.47272 * 59.99789 * 13 11 10 40 40 H 0.97003 * 120.00243 * 180.02562 * 18 17 15 41 41 H 1.08999 * 110.67111 * 79.15071 * 23 10 9 42 42 H 1.09005 * 110.65946 * 202.26449 * 23 10 9 43 43 H 1.09002 * 109.47224 * 59.99619 * 26 24 7 44 44 H 1.09001 * 109.47582 * 179.97438 * 26 24 7 45 45 H 1.09002 * 109.47130 * 299.99698 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6067 -0.0006 5 6 4.9023 1.3695 -0.0014 6 7 5.3253 1.6174 1.3834 7 6 6.5921 2.3601 1.4218 8 1 6.6457 3.0595 0.5875 9 6 7.7846 1.3866 1.3812 10 7 8.5646 1.6053 2.6137 11 6 9.8765 1.3579 2.7986 12 8 10.5422 0.9055 1.8912 13 6 10.5161 1.6421 4.1332 14 16 12.2722 1.2090 4.0652 15 6 12.7550 1.6305 5.7065 16 1 12.0267 2.0268 6.3987 17 6 14.0714 1.4543 6.1095 18 7 14.9591 0.9718 5.2658 19 14 14.5831 1.9005 7.8498 20 1 14.4154 0.7188 8.7335 21 1 16.0066 2.3236 7.8541 22 1 13.7344 3.0136 8.3454 23 6 7.6111 2.1514 3.6067 24 6 6.7320 3.1142 2.7644 25 1 7.2351 4.0703 2.6196 26 6 5.3637 3.3139 3.4189 27 8 3.4537 -0.7254 -0.0015 28 7 2.2868 -1.0424 -0.0010 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8903 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 2.0710 2.1742 -0.0004 33 1 5.6658 0.7857 -0.5156 34 1 4.7649 2.3209 -0.5152 35 1 4.6062 2.1013 1.9000 36 1 7.4236 0.3587 1.3478 37 1 8.4037 1.5940 0.5083 38 1 10.4123 2.7016 4.3675 39 1 10.0249 1.0495 4.9050 40 1 15.8791 0.8483 5.5476 41 1 7.0051 1.3542 4.0372 42 1 8.1400 2.6982 4.3875 43 1 4.9055 2.3429 3.6067 44 1 5.4862 3.8461 4.3622 45 1 4.7243 3.8948 2.7541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700255093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:04 Heat of formation + Delta-G solvation = 37.800947 kcal Electronic energy + Delta-G solvation = -26243.254821 eV Core-core repulsion = 22390.737078 eV Total energy + Delta-G solvation = -3852.517743 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.25358 -40.14496 -38.10783 -35.70581 -35.08261 -33.08882 -32.41709 -31.71730 -30.12601 -29.07920 -27.95085 -26.54296 -25.72301 -25.40850 -23.40000 -22.93524 -20.63074 -19.90974 -19.28356 -17.93848 -17.85954 -17.56024 -16.83058 -16.25205 -16.04994 -15.38835 -15.18048 -14.82460 -14.78571 -14.53589 -14.13951 -13.80727 -13.72283 -13.63413 -13.49191 -13.38287 -13.09282 -12.79557 -12.52304 -12.48224 -12.24341 -12.11837 -11.75100 -11.53160 -11.43700 -11.15282 -11.05399 -11.02609 -11.00880 -10.75367 -10.38761 -9.86281 -9.80520 -9.40046 -9.05585 -9.00210 -8.51229 -8.21646 -6.48792 -6.20454 -3.91001 1.05443 1.82764 2.68439 2.91416 3.08740 3.23109 3.26584 3.30937 3.59592 3.73583 3.80739 4.03107 4.09875 4.21459 4.33452 4.56808 4.59469 4.64833 4.77102 4.99472 5.01353 5.02373 5.05519 5.07686 5.10894 5.14587 5.17978 5.25233 5.31988 5.40587 5.43105 5.53612 5.63492 5.64779 5.69840 5.72576 5.85277 5.89328 5.97291 6.14923 6.35944 6.47007 6.81353 7.60512 7.73812 7.93661 8.36257 8.59074 9.24702 10.86965 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026363 B = 0.001870 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.828115 B =14971.536956 C =15296.809682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.012 3.988 3 C -0.231 4.231 4 C -0.016 4.016 5 C 0.133 3.867 6 N -0.680 5.680 7 C 0.077 3.923 8 H 0.065 0.935 9 C 0.116 3.884 10 N -0.627 5.627 11 C 0.552 3.448 12 O -0.516 6.516 13 C -0.146 4.146 14 S -0.060 6.060 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.109 3.891 24 C -0.107 4.107 25 H 0.090 0.910 26 C -0.151 4.151 27 O 0.111 5.889 28 N -0.364 5.364 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.169 0.831 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.352 0.648 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.861 6.335 -9.146 31.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.147 4.147 3 C -0.254 4.254 4 C -0.081 4.081 5 C 0.004 3.996 6 N -0.317 5.317 7 C -0.033 4.033 8 H 0.083 0.917 9 C -0.008 4.008 10 N -0.364 5.364 11 C 0.341 3.659 12 O -0.390 6.390 13 C -0.297 4.297 14 S 0.166 5.834 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.014 4.014 24 C -0.127 4.127 25 H 0.108 0.892 26 C -0.209 4.209 27 O 0.044 5.956 28 N -0.068 5.068 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.187 0.813 33 H 0.119 0.881 34 H 0.087 0.913 35 H 0.176 0.824 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -28.485 3.643 -10.449 30.559 hybrid contribution -0.913 2.528 1.929 3.309 sum -29.397 6.171 -8.520 31.223 Atomic orbital electron populations 1.20165 0.85966 1.03750 1.03434 1.23604 0.99086 0.88822 1.03143 1.22430 0.91269 1.01103 1.10566 1.24314 0.97655 0.84019 1.02090 1.20425 0.90375 0.97224 0.91601 1.60611 1.05972 1.53351 1.11789 1.22414 0.89323 0.93673 0.97864 0.91686 1.22005 0.90767 0.99513 0.88552 1.48727 1.07860 1.66284 1.13529 1.19990 0.79138 0.76847 0.89945 1.90713 1.61023 1.43425 1.43882 1.23500 1.05434 1.04656 0.96085 1.85410 0.95315 1.84515 1.18126 1.22861 0.97709 1.49969 0.97793 0.90940 1.24990 0.95408 0.94727 0.98446 1.70020 1.03327 1.42054 1.34851 0.86169 0.77875 0.78779 0.82678 1.20265 1.20757 1.19715 1.22586 0.90739 0.96162 0.91933 1.22490 0.96996 0.98905 0.94305 0.89177 1.21751 0.95590 1.02444 1.01090 1.84868 1.21369 1.22655 1.66712 1.73900 0.89395 1.24180 1.19293 0.90135 0.90065 0.90547 0.81304 0.88093 0.91308 0.82405 0.90472 0.90679 0.89354 0.89288 0.92188 0.90541 0.89908 0.91006 0.91434 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.47 36.01 0.38 -0.01 16 2 C 0.01 0.10 7.33 -82.10 -0.60 -0.50 16 3 C -0.23 -1.54 11.06 -39.38 -0.44 -1.97 16 4 C -0.02 -0.13 7.00 -35.30 -0.25 -0.37 16 5 C 0.13 0.78 6.09 -4.97 -0.03 0.75 16 6 N -0.68 -4.57 5.93 -106.54 -0.63 -5.20 16 7 C 0.08 0.59 3.24 -66.34 -0.21 0.38 16 8 H 0.07 0.42 7.84 -51.93 -0.41 0.02 16 9 C 0.12 1.36 6.71 -2.98 -0.02 1.34 16 10 N -0.63 -9.02 3.29 -169.59 -0.56 -9.58 16 11 C 0.55 10.79 7.91 -10.99 -0.09 10.70 16 12 O -0.52 -12.16 16.20 5.55 0.09 -12.07 16 13 C -0.15 -3.02 5.09 36.00 0.18 -2.84 16 14 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 15 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 16 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 19 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 C 0.11 1.14 6.40 -1.98 -0.01 1.13 16 24 C -0.11 -0.80 3.65 -88.60 -0.32 -1.13 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 26 C -0.15 -0.78 7.92 37.15 0.29 -0.49 16 27 O 0.11 1.19 11.20 17.19 0.19 1.38 16 28 N -0.36 -4.04 12.07 33.42 0.40 -3.64 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.26 8.07 -51.93 -0.42 -0.15 16 35 H 0.35 1.94 5.40 -39.29 -0.21 1.73 16 36 H 0.08 0.96 7.93 -51.93 -0.41 0.55 16 37 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 38 H 0.09 1.68 7.91 -51.91 -0.41 1.27 16 39 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.08 0.77 8.02 -51.93 -0.42 0.35 16 42 H 0.08 0.86 7.24 -51.93 -0.38 0.48 16 43 H 0.07 0.40 6.90 -51.93 -0.36 0.04 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.22 7.82 -51.93 -0.41 -0.18 16 LS Contribution 387.56 15.07 5.84 5.84 Total: -1.00 -36.20 387.56 -8.85 -45.05 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -6.76 Total: -2.80 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -0.92 Total: -6.00 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: -0.05 Total: -43.93 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.28 Total: -10.69 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.20 -8.85 -45.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700255093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.847 kcal (2) G-P(sol) polarization free energy of solvation -36.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds