Wall clock time and date at job start Tue Mar 31 2020 22:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41375 * 126.80544 * 2 1 4 4 C 1.35450 * 103.98779 * 180.02562 * 3 2 1 5 5 C 1.50705 * 126.77526 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.46863 * 90.00125 * 5 4 3 7 7 C 1.46895 * 110.99900 * 179.97438 * 6 5 4 8 8 H 1.09000 * 110.29003 * 34.30299 * 7 6 5 9 9 C 1.54001 * 110.33370 * 272.16896 * 7 6 5 10 10 N 1.47488 * 107.08330 * 239.80212 * 9 7 6 11 11 C 1.34777 * 127.03255 * 205.40679 * 10 9 7 12 12 O 1.21289 * 119.99896 * 359.97438 * 11 10 9 13 13 C 1.50692 * 120.00225 * 180.02562 * 11 10 9 14 14 S 1.81000 * 109.47366 * 180.02562 * 13 11 10 15 15 C 1.76198 * 99.99959 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99999 * 359.97438 * 15 14 13 17 17 C 1.38801 * 120.00150 * 180.02562 * 15 14 13 18 18 N 1.31631 * 119.99989 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00112 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47323 * 90.00004 * 19 17 15 21 21 H 1.48500 * 109.47037 * 209.99668 * 19 17 15 22 22 H 1.48496 * 109.47450 * 329.99794 * 19 17 15 23 23 C 1.48110 * 105.93095 * 25.44703 * 10 9 7 24 24 C 1.54614 * 110.32647 * 156.43202 * 7 6 5 25 25 H 1.09003 * 110.74661 * 215.38002 * 24 7 6 26 26 C 1.52993 * 110.74241 * 338.71312 * 24 7 6 27 27 O 1.34034 * 106.44531 * 0.02562 * 4 3 2 28 28 N 1.20925 * 111.56886 * 359.97438 * 27 4 3 29 29 H 1.09005 * 109.46758 * 269.97205 * 1 2 3 30 30 H 1.09001 * 109.46799 * 29.97065 * 1 2 3 31 31 H 1.09000 * 109.47005 * 149.97352 * 1 2 3 32 32 H 1.08002 * 128.00212 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47074 * 210.00158 * 5 4 3 34 34 H 1.09000 * 109.47098 * 330.00306 * 5 4 3 35 35 H 1.00897 * 111.00301 * 303.95686 * 6 5 4 36 36 H 1.08999 * 109.90875 * 359.15962 * 9 7 6 37 37 H 1.09002 * 109.91794 * 120.43649 * 9 7 6 38 38 H 1.09010 * 109.47017 * 300.00261 * 13 11 10 39 39 H 1.08999 * 109.47272 * 59.99789 * 13 11 10 40 40 H 0.97003 * 120.00243 * 180.02562 * 18 17 15 41 41 H 1.08999 * 110.67111 * 79.15071 * 23 10 9 42 42 H 1.09005 * 110.65946 * 202.26449 * 23 10 9 43 43 H 1.09002 * 109.47224 * 59.99619 * 26 24 7 44 44 H 1.09001 * 109.47582 * 179.97438 * 26 24 7 45 45 H 1.09002 * 109.47130 * 299.99698 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6067 -0.0006 5 6 4.9023 1.3695 -0.0014 6 7 5.3253 1.6174 1.3834 7 6 6.5921 2.3601 1.4218 8 1 6.6457 3.0595 0.5875 9 6 7.7846 1.3866 1.3812 10 7 8.5646 1.6053 2.6137 11 6 9.8765 1.3579 2.7986 12 8 10.5422 0.9055 1.8912 13 6 10.5161 1.6421 4.1332 14 16 12.2722 1.2090 4.0652 15 6 12.7550 1.6305 5.7065 16 1 12.0267 2.0268 6.3987 17 6 14.0714 1.4543 6.1095 18 7 14.9591 0.9718 5.2658 19 14 14.5831 1.9005 7.8498 20 1 14.4154 0.7188 8.7335 21 1 16.0066 2.3236 7.8541 22 1 13.7344 3.0136 8.3454 23 6 7.6111 2.1514 3.6067 24 6 6.7320 3.1142 2.7644 25 1 7.2351 4.0703 2.6196 26 6 5.3637 3.3139 3.4189 27 8 3.4537 -0.7254 -0.0015 28 7 2.2868 -1.0424 -0.0010 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8903 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 2.0710 2.1742 -0.0004 33 1 5.6658 0.7857 -0.5156 34 1 4.7649 2.3209 -0.5152 35 1 4.6062 2.1013 1.9000 36 1 7.4236 0.3587 1.3478 37 1 8.4037 1.5940 0.5083 38 1 10.4123 2.7016 4.3675 39 1 10.0249 1.0495 4.9050 40 1 15.8791 0.8483 5.5476 41 1 7.0051 1.3542 4.0372 42 1 8.1400 2.6982 4.3875 43 1 4.9055 2.3429 3.6067 44 1 5.4862 3.8461 4.3622 45 1 4.7243 3.8948 2.7541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700255093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:03 Heat of formation + Delta-G solvation = 12.588051 kcal Electronic energy + Delta-G solvation = -26244.348134 eV Core-core repulsion = 22390.737078 eV Total energy + Delta-G solvation = -3853.611056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.87023 -41.19458 -39.31310 -36.50671 -35.65721 -34.58789 -33.93915 -32.33931 -31.47834 -29.55315 -28.99979 -27.67309 -27.30877 -26.28791 -24.00907 -23.80213 -21.22797 -20.79042 -20.41296 -19.60405 -18.60004 -18.39687 -18.01740 -17.25097 -16.88542 -16.74668 -16.56407 -16.33630 -15.72783 -15.53315 -15.07977 -14.79126 -14.67695 -14.55488 -14.17549 -14.11510 -13.92119 -13.72067 -13.53539 -13.30426 -13.19675 -13.03530 -12.92653 -12.88863 -12.85430 -12.61043 -12.17142 -12.06715 -11.75203 -11.73104 -11.62539 -11.14360 -10.96937 -10.93262 -10.46446 -10.28458 -9.75533 -9.50283 -8.68298 -8.34548 -6.13497 0.47347 1.23530 1.28969 1.42934 1.45044 1.55972 1.56589 2.07131 2.18485 2.27279 2.99542 3.14811 3.23621 3.33116 3.42948 3.49853 3.60557 3.87833 4.00721 4.08871 4.19742 4.23954 4.31654 4.38075 4.42799 4.46301 4.56291 4.59194 4.61612 4.63784 4.70554 4.73973 4.83772 4.91649 4.93936 4.98311 5.05843 5.22833 5.26061 5.28353 5.41523 5.47561 5.87899 6.19717 6.34694 6.45723 7.06343 7.11610 7.33933 8.74784 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026363 B = 0.001870 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.828115 B =14971.536956 C =15296.809682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.005 3.995 3 C -0.221 4.221 4 C -0.023 4.023 5 C 0.136 3.864 6 N -0.688 5.688 7 C 0.093 3.907 8 H 0.088 0.912 9 C 0.110 3.890 10 N -0.619 5.619 11 C 0.548 3.452 12 O -0.570 6.570 13 C -0.119 4.119 14 S -0.151 6.151 15 C -0.546 4.546 16 H 0.083 0.917 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 1.000 3.000 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.256 1.256 23 C 0.098 3.902 24 C -0.096 4.096 25 H 0.096 0.904 26 C -0.145 4.145 27 O 0.077 5.923 28 N -0.406 5.406 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.204 0.796 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.363 0.637 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.271 0.729 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.866 9.057 -7.840 34.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.153 4.153 3 C -0.243 4.243 4 C -0.087 4.087 5 C 0.007 3.993 6 N -0.327 5.327 7 C -0.018 4.018 8 H 0.105 0.895 9 C -0.014 4.014 10 N -0.353 5.353 11 C 0.337 3.663 12 O -0.449 6.449 13 C -0.270 4.270 14 S 0.076 5.924 15 C -0.694 4.694 16 H 0.101 0.899 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.180 1.180 23 C -0.024 4.024 24 C -0.116 4.116 25 H 0.114 0.886 26 C -0.203 4.203 27 O 0.015 5.985 28 N -0.115 5.115 29 H 0.108 0.892 30 H 0.124 0.876 31 H 0.089 0.911 32 H 0.221 0.779 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.189 0.811 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -31.550 6.394 -9.134 33.462 hybrid contribution -0.152 1.672 1.459 2.224 sum -31.702 8.066 -7.675 33.600 Atomic orbital electron populations 1.20320 0.83960 1.04741 1.04334 1.24280 1.00546 0.88916 1.01558 1.22836 0.90181 1.02160 1.09111 1.24738 0.98903 0.83181 1.01902 1.20516 0.89354 0.98172 0.91288 1.60438 1.05902 1.53676 1.12662 1.22221 0.87949 0.92594 0.98987 0.89462 1.22226 0.91856 1.00438 0.86865 1.48669 1.06674 1.64263 1.15685 1.19748 0.80754 0.76963 0.88852 1.90687 1.62862 1.46248 1.45071 1.23288 1.00233 1.05887 0.97561 1.85604 1.01972 1.85453 1.19392 1.23194 0.98442 1.50053 0.97702 0.89855 1.26147 0.95276 0.94253 1.03469 1.70189 1.03817 1.43321 1.37441 0.84935 0.77633 0.79006 0.76288 1.19378 1.20236 1.18026 1.22959 0.90418 0.97181 0.91840 1.22470 0.97799 0.97991 0.93347 0.88591 1.21727 0.94098 1.02814 1.01640 1.84813 1.21512 1.24374 1.67831 1.73906 0.89933 1.25985 1.21677 0.89164 0.87575 0.91075 0.77932 0.89041 0.88175 0.81088 0.91470 0.91987 0.87326 0.87829 0.91973 0.89793 0.89555 0.91235 0.90913 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.47 71.24 0.75 0.13 16 2 C 0.01 0.08 7.33 43.58 0.32 0.40 16 3 C -0.22 -2.33 11.06 22.40 0.25 -2.08 16 4 C -0.02 -0.32 7.00 25.04 0.18 -0.14 16 5 C 0.14 1.27 6.09 85.56 0.52 1.80 16 6 N -0.69 -7.34 5.93 -490.99 -2.91 -10.26 16 7 C 0.09 1.17 3.24 45.80 0.15 1.32 16 8 H 0.09 0.80 7.84 -2.39 -0.02 0.78 16 9 C 0.11 2.51 6.71 86.53 0.58 3.09 16 10 N -0.62 -17.47 3.29 -808.86 -2.66 -20.14 16 11 C 0.55 21.84 7.91 87.65 0.69 22.53 16 12 O -0.57 -28.13 16.20 -3.06 -0.05 -28.18 16 13 C -0.12 -4.92 5.09 71.23 0.36 -4.56 16 14 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 15 C -0.55 -31.51 9.50 67.95 0.65 -30.86 16 16 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 17 C 0.01 0.76 5.49 84.86 0.47 1.23 16 18 N -0.91 -56.47 13.22 21.65 0.29 -56.18 16 19 Si 1.00 43.72 29.55 68.60 2.03 45.75 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 23 C 0.10 1.84 6.40 86.83 0.56 2.40 16 24 C -0.10 -1.12 3.65 -9.49 -0.03 -1.16 16 25 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 26 C -0.15 -0.90 7.92 71.98 0.57 -0.33 16 27 O 0.08 1.68 11.20 71.69 0.80 2.48 16 28 N -0.41 -9.10 12.07 -49.56 -0.60 -9.70 16 29 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.11 0.31 8.14 -2.39 -0.02 0.30 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.20 0.56 8.06 -2.91 -0.02 0.54 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 34 H 0.10 0.35 8.07 -2.39 -0.02 0.33 16 35 H 0.36 2.60 5.40 -89.70 -0.48 2.11 16 36 H 0.07 1.69 7.93 -2.39 -0.02 1.67 16 37 H 0.06 1.59 8.05 -2.39 -0.02 1.57 16 38 H 0.11 4.03 7.91 -2.39 -0.02 4.01 16 39 H 0.10 3.96 8.14 -2.40 -0.02 3.94 16 40 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.08 1.50 8.02 -2.39 -0.02 1.49 16 42 H 0.09 1.58 7.24 -2.38 -0.02 1.57 16 43 H 0.07 0.50 6.90 -2.39 -0.02 0.49 16 44 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.08 0.20 7.82 -2.39 -0.02 0.18 16 Total: -1.00 -84.02 387.56 2.25 -81.77 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.52 Total: 10.47 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 6.00 Total: -6.24 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -5.89 Total: -96.27 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: 0.75 Total: -25.70 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -84.02 2.25 -81.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700255093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.361 kcal (2) G-P(sol) polarization free energy of solvation -84.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds