Wall clock time and date at job start Tue Mar 31 2020 22:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34038 * 126.77658 * 2 1 4 4 N 1.20923 * 111.56381 * 180.28115 * 3 2 1 5 5 C 1.30175 * 111.60538 * 359.76474 * 4 3 2 6 6 C 1.35450 * 126.77412 * 179.88177 * 2 1 3 7 7 C 1.50706 * 128.00736 * 0.02562 * 6 2 1 8 8 N 1.46902 * 109.46577 * 79.70284 * 7 6 2 9 9 C 1.46905 * 110.99800 * 179.97438 * 8 7 6 10 10 H 1.09003 * 110.30127 * 325.70564 * 9 8 7 11 11 C 1.54385 * 110.34348 * 87.87649 * 9 8 7 12 12 N 1.48422 * 104.48620 * 95.03031 * 11 9 8 13 13 C 1.34770 * 127.82527 * 219.57239 * 12 11 9 14 14 O 1.21281 * 119.99990 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00212 * 180.02562 * 13 12 11 16 16 S 1.81001 * 109.47311 * 179.97438 * 15 13 12 17 17 C 1.76204 * 99.99737 * 179.97438 * 16 15 13 18 18 H 1.07991 * 120.00075 * 359.97438 * 17 16 15 19 19 C 1.38804 * 119.99344 * 180.02562 * 17 16 15 20 20 N 1.31627 * 120.00363 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99621 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47406 * 89.99481 * 21 19 17 23 23 H 1.48500 * 109.47476 * 209.99888 * 21 19 17 24 24 H 1.48507 * 109.47076 * 329.99966 * 21 19 17 25 25 C 1.48146 * 104.33454 * 39.60438 * 12 11 9 26 26 C 1.54286 * 110.34511 * 203.52964 * 9 8 7 27 27 H 1.08995 * 110.34220 * 122.14930 * 26 9 8 28 28 C 1.53000 * 110.34112 * 359.97438 * 26 9 8 29 29 H 1.08993 * 109.47780 * 270.11785 * 1 2 3 30 30 H 1.09004 * 109.46985 * 30.11494 * 1 2 3 31 31 H 1.09003 * 109.47290 * 150.10874 * 1 2 3 32 32 H 1.08006 * 126.80082 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47318 * 199.69791 * 7 6 2 34 34 H 1.09000 * 109.47161 * 319.70422 * 7 6 2 35 35 H 1.00896 * 111.00594 * 303.95433 * 8 7 6 36 36 H 1.08997 * 110.40995 * 213.79274 * 11 9 8 37 37 H 1.09002 * 110.40752 * 336.21912 * 11 9 8 38 38 H 1.08997 * 109.46718 * 300.00044 * 15 13 12 39 39 H 1.09003 * 109.47018 * 59.99659 * 15 13 12 40 40 H 0.96994 * 119.99893 * 180.02562 * 20 19 17 41 41 H 1.08997 * 110.40450 * 201.59962 * 25 12 11 42 42 H 1.09001 * 110.50514 * 79.22449 * 25 12 11 43 43 H 1.09007 * 109.46781 * 60.00723 * 28 26 9 44 44 H 1.08994 * 109.47456 * 179.97438 * 28 26 9 45 45 H 1.08998 * 109.47798 * 300.00677 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4763 0.7563 -0.0055 5 6 3.6213 -0.5373 -0.0049 6 6 2.3179 -1.0850 0.0022 7 6 1.9223 -2.5392 0.0047 8 7 1.5554 -2.9490 -1.3574 9 6 1.1637 -4.3644 -1.3938 10 1 1.7494 -4.9374 -0.6749 11 6 -0.3441 -4.5118 -1.0967 12 7 -0.9836 -4.5571 -2.4353 13 6 -2.1405 -3.9817 -2.8184 14 8 -2.7879 -3.3338 -2.0235 15 6 -2.6298 -4.1434 -4.2346 16 16 -4.1977 -3.2618 -4.4357 17 6 -4.5283 -3.6085 -6.1313 18 1 -3.8377 -4.2094 -6.7042 19 6 -5.6759 -3.1084 -6.7309 20 7 -6.5174 -2.3755 -6.0327 21 14 -6.0261 -3.4753 -8.5287 22 1 -6.8167 -4.7280 -8.6334 23 1 -6.7963 -2.3529 -9.1221 24 1 -4.7437 -3.6368 -9.2599 25 6 -0.0623 -5.3787 -3.2544 26 6 1.3499 -4.9362 -2.8146 27 1 2.0271 -5.7900 -2.7937 28 6 1.8857 -3.8561 -3.7566 29 1 -0.3634 0.0021 1.0276 30 1 -0.3633 0.8890 -0.5156 31 1 -0.3634 -0.8910 -0.5121 32 1 4.5528 -1.0840 -0.0094 33 1 2.7604 -3.1431 0.3525 34 1 1.0703 -2.6828 0.6693 35 1 0.8233 -2.3613 -1.7271 36 1 -0.5355 -5.4362 -0.5517 37 1 -0.7055 -3.6538 -0.5299 38 1 -1.8910 -3.7334 -4.9232 39 1 -2.7783 -5.2018 -4.4490 40 1 -7.3195 -2.0264 -6.4516 41 1 -0.2117 -5.1745 -4.3146 42 1 -0.2099 -6.4387 -3.0478 43 1 2.8472 -3.4977 -3.3888 44 1 2.0123 -4.2748 -4.7549 45 1 1.1800 -3.0264 -3.7969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700255371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:49 Heat of formation + Delta-G solvation = 33.888253 kcal Electronic energy + Delta-G solvation = -27206.377229 eV Core-core repulsion = 23353.689819 eV Total energy + Delta-G solvation = -3852.687410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.11969 -40.19892 -38.01703 -36.08239 -33.70328 -33.29127 -32.45486 -32.13895 -30.21202 -28.63563 -27.54983 -26.46660 -25.60442 -25.38599 -23.03167 -22.81810 -20.89493 -19.87446 -19.42152 -17.81070 -17.79758 -17.36722 -16.72130 -16.52951 -15.73017 -15.21192 -14.89224 -14.82550 -14.72973 -14.44827 -14.16084 -13.89268 -13.65014 -13.45394 -13.19510 -13.01461 -12.80947 -12.76047 -12.64759 -12.33403 -12.22313 -11.90812 -11.85562 -11.43652 -11.27531 -11.08403 -11.05238 -11.01969 -10.87375 -10.76519 -10.53479 -9.83977 -9.49545 -9.43970 -9.09010 -8.94257 -8.45564 -8.27217 -6.53352 -6.24183 -3.95025 1.22955 2.00374 2.83154 2.87585 2.98573 3.20796 3.24248 3.28788 3.57082 3.87813 4.09595 4.17848 4.29471 4.34793 4.37924 4.48108 4.80137 4.82872 4.97791 5.02475 5.07818 5.11251 5.13386 5.19160 5.27317 5.29285 5.33759 5.44632 5.48064 5.49232 5.55737 5.63003 5.67493 5.70221 5.85964 5.86271 5.93606 6.02522 6.10325 6.21154 6.36177 6.69354 6.99083 7.57296 7.64727 8.04162 8.32865 8.48293 9.21350 10.83254 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013694 B = 0.002666 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.211370 B =10499.377589 C =11415.863528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.017 4.017 3 O 0.094 5.906 4 N -0.370 5.370 5 C 0.009 3.991 6 C -0.203 4.203 7 C 0.135 3.865 8 N -0.671 5.671 9 C 0.077 3.923 10 H 0.094 0.906 11 C 0.076 3.924 12 N -0.627 5.627 13 C 0.555 3.445 14 O -0.518 6.518 15 C -0.147 4.147 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.101 3.899 26 C -0.095 4.095 27 H 0.086 0.914 28 C -0.124 4.124 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.188 0.812 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.349 0.651 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.269 0.731 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.046 0.954 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.207 -4.139 12.049 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.082 4.082 3 O 0.030 5.970 4 N -0.075 5.075 5 C -0.171 4.171 6 C -0.208 4.208 7 C 0.006 3.994 8 N -0.302 5.302 9 C -0.034 4.034 10 H 0.112 0.888 11 C -0.049 4.049 12 N -0.364 5.364 13 C 0.344 3.656 14 O -0.393 6.393 15 C -0.297 4.297 16 S 0.167 5.833 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.023 4.023 26 C -0.115 4.115 27 H 0.104 0.896 28 C -0.182 4.182 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.205 0.795 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.169 0.831 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 20.455 -2.076 12.998 24.324 hybrid contribution -0.565 -1.846 -1.681 2.560 sum 19.890 -3.922 11.317 23.218 Atomic orbital electron populations 1.20414 0.83685 1.05295 1.04285 1.24441 0.96303 0.85909 1.01513 1.84817 1.11425 1.33126 1.67586 1.73887 0.97202 1.16895 1.19497 1.24851 0.99612 0.90131 1.02461 1.20940 0.92332 0.96819 1.10682 1.20142 1.00226 0.88698 0.90321 1.60736 1.46321 1.02997 1.20183 1.22588 0.93421 0.89625 0.97815 0.88769 1.23039 0.92836 1.02617 0.86417 1.49028 1.22327 1.53231 1.11863 1.20008 0.78242 0.77577 0.89792 1.90703 1.54678 1.39599 1.54274 1.23500 1.05861 1.05784 0.94559 1.85369 1.17106 1.66276 1.14587 1.22848 1.10824 1.38695 0.95940 0.90944 1.24987 0.95033 0.94509 0.99010 1.70010 1.11446 1.32286 1.36534 0.86172 0.78495 0.78120 0.82747 1.20265 1.20731 1.19665 1.22521 0.88058 0.94837 0.96861 1.22147 0.95930 0.98982 0.94419 0.89597 1.21519 1.01841 0.97796 0.97033 0.89180 0.89240 0.89099 0.79451 0.89499 0.93619 0.83135 0.91050 0.90214 0.89287 0.89372 0.92164 0.89746 0.91200 0.91517 0.93519 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.30 36.01 0.37 -0.27 16 2 C -0.02 -0.17 7.49 -35.30 -0.26 -0.43 16 3 O 0.09 1.10 11.20 17.18 0.19 1.29 16 4 N -0.37 -4.44 12.07 30.36 0.37 -4.07 16 5 C 0.01 0.08 12.16 -17.06 -0.21 -0.12 16 6 C -0.20 -1.84 5.84 -104.42 -0.61 -2.45 16 7 C 0.14 0.97 5.86 -4.97 -0.03 0.94 16 8 N -0.67 -5.52 4.49 -106.50 -0.48 -6.00 16 9 C 0.08 0.58 3.35 -66.31 -0.22 0.35 16 10 H 0.09 0.54 7.84 -51.93 -0.41 0.13 16 11 C 0.08 0.76 6.49 -2.26 -0.01 0.74 16 12 N -0.63 -8.13 3.32 -169.09 -0.56 -8.69 16 13 C 0.55 10.06 7.93 -10.99 -0.09 9.98 16 14 O -0.52 -11.26 16.14 5.56 0.09 -11.17 16 15 C -0.15 -2.91 5.13 36.00 0.18 -2.73 16 16 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 17 C -0.53 -15.03 9.50 30.94 0.29 -14.73 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 21 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C 0.10 0.98 6.46 -2.41 -0.02 0.96 16 26 C -0.09 -0.74 3.66 -89.22 -0.33 -1.06 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 C -0.12 -1.11 8.09 37.16 0.30 -0.81 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.79 7.48 -51.93 -0.39 0.41 16 32 H 0.19 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.09 0.51 8.07 -51.93 -0.42 0.09 16 34 H 0.05 0.32 7.96 -51.93 -0.41 -0.10 16 35 H 0.35 3.54 7.42 -39.29 -0.29 3.25 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.89 7.60 -51.93 -0.39 0.50 16 38 H 0.09 1.66 7.95 -51.92 -0.41 1.24 16 39 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.08 0.87 7.02 -51.93 -0.36 0.50 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.60 7.84 -51.93 -0.41 0.19 16 44 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.05 0.60 7.52 -51.93 -0.39 0.21 16 LS Contribution 387.52 15.07 5.84 5.84 Total: -1.00 -34.13 387.52 -8.59 -42.72 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.82 Total: 0.48 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -0.72 Total: -7.63 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.06 Total: -43.89 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.28 Total: -9.88 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.13 -8.59 -42.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700255371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.608 kcal (2) G-P(sol) polarization free energy of solvation -34.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds