Wall clock time and date at job start Tue Mar 31 2020 22:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34038 * 126.77658 * 2 1 4 4 N 1.20923 * 111.56381 * 180.28115 * 3 2 1 5 5 C 1.30175 * 111.60538 * 359.76474 * 4 3 2 6 6 C 1.35450 * 126.77412 * 179.88177 * 2 1 3 7 7 C 1.50706 * 128.00736 * 0.02562 * 6 2 1 8 8 N 1.46902 * 109.46577 * 79.70284 * 7 6 2 9 9 C 1.46905 * 110.99800 * 179.97438 * 8 7 6 10 10 H 1.09003 * 110.30127 * 325.70564 * 9 8 7 11 11 C 1.54385 * 110.34348 * 87.87649 * 9 8 7 12 12 N 1.48422 * 104.48620 * 95.03031 * 11 9 8 13 13 C 1.34770 * 127.82527 * 219.57239 * 12 11 9 14 14 O 1.21281 * 119.99990 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00212 * 180.02562 * 13 12 11 16 16 S 1.81001 * 109.47311 * 179.97438 * 15 13 12 17 17 C 1.76204 * 99.99737 * 179.97438 * 16 15 13 18 18 H 1.07991 * 120.00075 * 359.97438 * 17 16 15 19 19 C 1.38804 * 119.99344 * 180.02562 * 17 16 15 20 20 N 1.31627 * 120.00363 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99621 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47406 * 89.99481 * 21 19 17 23 23 H 1.48500 * 109.47476 * 209.99888 * 21 19 17 24 24 H 1.48507 * 109.47076 * 329.99966 * 21 19 17 25 25 C 1.48146 * 104.33454 * 39.60438 * 12 11 9 26 26 C 1.54286 * 110.34511 * 203.52964 * 9 8 7 27 27 H 1.08995 * 110.34220 * 122.14930 * 26 9 8 28 28 C 1.53000 * 110.34112 * 359.97438 * 26 9 8 29 29 H 1.08993 * 109.47780 * 270.11785 * 1 2 3 30 30 H 1.09004 * 109.46985 * 30.11494 * 1 2 3 31 31 H 1.09003 * 109.47290 * 150.10874 * 1 2 3 32 32 H 1.08006 * 126.80082 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47318 * 199.69791 * 7 6 2 34 34 H 1.09000 * 109.47161 * 319.70422 * 7 6 2 35 35 H 1.00896 * 111.00594 * 303.95433 * 8 7 6 36 36 H 1.08997 * 110.40995 * 213.79274 * 11 9 8 37 37 H 1.09002 * 110.40752 * 336.21912 * 11 9 8 38 38 H 1.08997 * 109.46718 * 300.00044 * 15 13 12 39 39 H 1.09003 * 109.47018 * 59.99659 * 15 13 12 40 40 H 0.96994 * 119.99893 * 180.02562 * 20 19 17 41 41 H 1.08997 * 110.40450 * 201.59962 * 25 12 11 42 42 H 1.09001 * 110.50514 * 79.22449 * 25 12 11 43 43 H 1.09007 * 109.46781 * 60.00723 * 28 26 9 44 44 H 1.08994 * 109.47456 * 179.97438 * 28 26 9 45 45 H 1.08998 * 109.47798 * 300.00677 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4763 0.7563 -0.0055 5 6 3.6213 -0.5373 -0.0049 6 6 2.3179 -1.0850 0.0022 7 6 1.9223 -2.5392 0.0047 8 7 1.5554 -2.9490 -1.3574 9 6 1.1637 -4.3644 -1.3938 10 1 1.7494 -4.9374 -0.6749 11 6 -0.3441 -4.5118 -1.0967 12 7 -0.9836 -4.5571 -2.4353 13 6 -2.1405 -3.9817 -2.8184 14 8 -2.7879 -3.3338 -2.0235 15 6 -2.6298 -4.1434 -4.2346 16 16 -4.1977 -3.2618 -4.4357 17 6 -4.5283 -3.6085 -6.1313 18 1 -3.8377 -4.2094 -6.7042 19 6 -5.6759 -3.1084 -6.7309 20 7 -6.5174 -2.3755 -6.0327 21 14 -6.0261 -3.4753 -8.5287 22 1 -6.8167 -4.7280 -8.6334 23 1 -6.7963 -2.3529 -9.1221 24 1 -4.7437 -3.6368 -9.2599 25 6 -0.0623 -5.3787 -3.2544 26 6 1.3499 -4.9362 -2.8146 27 1 2.0271 -5.7900 -2.7937 28 6 1.8857 -3.8561 -3.7566 29 1 -0.3634 0.0021 1.0276 30 1 -0.3633 0.8890 -0.5156 31 1 -0.3634 -0.8910 -0.5121 32 1 4.5528 -1.0840 -0.0094 33 1 2.7604 -3.1431 0.3525 34 1 1.0703 -2.6828 0.6693 35 1 0.8233 -2.3613 -1.7271 36 1 -0.5355 -5.4362 -0.5517 37 1 -0.7055 -3.6538 -0.5299 38 1 -1.8910 -3.7334 -4.9232 39 1 -2.7783 -5.2018 -4.4490 40 1 -7.3195 -2.0264 -6.4516 41 1 -0.2117 -5.1745 -4.3146 42 1 -0.2099 -6.4387 -3.0478 43 1 2.8472 -3.4977 -3.3888 44 1 2.0123 -4.2748 -4.7549 45 1 1.1800 -3.0264 -3.7969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700255371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:48 Heat of formation + Delta-G solvation = 11.483567 kcal Electronic energy + Delta-G solvation = -27207.348769 eV Core-core repulsion = 23353.689819 eV Total energy + Delta-G solvation = -3853.658950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.89384 -41.18904 -39.17648 -36.86620 -34.60245 -34.55153 -34.06608 -32.95400 -31.46860 -29.53697 -28.43603 -27.66322 -27.28433 -26.21098 -23.89738 -23.53346 -21.63448 -20.72573 -20.57029 -19.56786 -18.60996 -18.21390 -17.97476 -17.43639 -16.88935 -16.73730 -16.26856 -15.98459 -15.69793 -15.37608 -15.20752 -15.14119 -14.55777 -14.38431 -14.12028 -13.99348 -13.93690 -13.70436 -13.42700 -13.34238 -13.23665 -13.13441 -12.89875 -12.83856 -12.70212 -12.59091 -12.18515 -11.99050 -11.76448 -11.70234 -11.49237 -11.31128 -11.14764 -10.91940 -10.28838 -10.20580 -9.85816 -9.25513 -8.67330 -8.35339 -6.13274 0.46533 1.24083 1.28445 1.41918 1.44809 1.55673 1.58518 2.09853 2.14351 2.26948 2.98911 3.20352 3.26552 3.41696 3.57258 3.62310 3.66647 3.83503 3.96774 4.14102 4.14490 4.25328 4.30863 4.40904 4.44972 4.48713 4.55046 4.58092 4.63699 4.70962 4.76631 4.79118 4.82382 4.91344 4.99052 5.00050 5.19708 5.20676 5.28847 5.39745 5.41140 5.63925 6.08552 6.19122 6.23405 6.45925 7.06123 7.13550 7.26649 8.73812 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013694 B = 0.002666 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.211370 B =10499.377589 C =11415.863528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.027 4.027 3 O 0.071 5.929 4 N -0.402 5.402 5 C 0.013 3.987 6 C -0.203 4.203 7 C 0.138 3.862 8 N -0.674 5.674 9 C 0.087 3.913 10 H 0.129 0.871 11 C 0.072 3.928 12 N -0.618 5.618 13 C 0.553 3.447 14 O -0.566 6.566 15 C -0.120 4.120 16 S -0.146 6.146 17 C -0.546 4.546 18 H 0.081 0.919 19 C 0.015 3.985 20 N -0.910 5.910 21 Si 0.997 3.003 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.259 1.259 25 C 0.092 3.908 26 C -0.085 4.085 27 H 0.119 0.881 28 C -0.120 4.120 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.215 0.785 33 H 0.110 0.890 34 H 0.050 0.950 35 H 0.335 0.665 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.271 0.729 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.049 0.951 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.635 -6.815 11.660 26.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 O 0.011 5.989 4 N -0.110 5.110 5 C -0.166 4.166 6 C -0.207 4.207 7 C 0.010 3.990 8 N -0.304 5.304 9 C -0.024 4.024 10 H 0.146 0.854 11 C -0.052 4.052 12 N -0.353 5.353 13 C 0.341 3.659 14 O -0.445 6.445 15 C -0.272 4.272 16 S 0.082 5.918 17 C -0.694 4.694 18 H 0.099 0.901 19 C -0.190 4.190 20 N -0.547 5.547 21 Si 0.819 3.181 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.182 1.182 25 C -0.030 4.030 26 C -0.105 4.105 27 H 0.137 0.863 28 C -0.178 4.178 29 H 0.123 0.877 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.232 0.768 33 H 0.129 0.871 34 H 0.068 0.932 35 H 0.153 0.847 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 22.931 -4.784 12.621 26.608 hybrid contribution -1.184 -1.076 -1.488 2.185 sum 21.747 -5.860 11.133 25.124 Atomic orbital electron populations 1.20422 0.82999 1.04820 1.05111 1.24779 0.96838 0.86022 1.01449 1.84780 1.11664 1.33986 1.68460 1.73879 0.97480 1.18343 1.21305 1.25370 1.00878 0.89589 1.00717 1.21219 0.91921 0.97616 1.09976 1.20244 1.01194 0.87709 0.89866 1.60780 1.45622 1.03249 1.20725 1.22662 0.91683 0.89547 0.98514 0.85362 1.23341 0.94263 1.02972 0.84625 1.48922 1.20759 1.51667 1.13974 1.19600 0.79658 0.78011 0.88599 1.90681 1.56713 1.42083 1.55000 1.23289 1.01919 1.05264 0.96687 1.85510 1.22494 1.68528 1.15303 1.23178 1.11312 1.38780 0.96124 0.90119 1.26104 0.94646 0.94022 1.04255 1.70171 1.12096 1.33564 1.38844 0.84976 0.78798 0.78139 0.76221 1.19246 1.20291 1.18244 1.22868 0.88394 0.95571 0.96161 1.22166 0.94910 0.99564 0.93839 0.86280 1.21464 1.01176 0.97361 0.97762 0.87679 0.89396 0.89828 0.76787 0.87137 0.93186 0.84694 0.89101 0.91795 0.88107 0.87955 0.91970 0.90455 0.88723 0.91315 0.93174 0.95411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 10.30 71.24 0.73 -0.54 16 2 C -0.03 -0.52 7.49 25.04 0.19 -0.33 16 3 O 0.07 1.71 11.20 71.66 0.80 2.51 16 4 N -0.40 -9.61 12.07 -59.26 -0.72 -10.32 16 5 C 0.01 0.24 12.16 85.71 1.04 1.28 16 6 C -0.20 -3.41 5.84 -19.73 -0.12 -3.52 16 7 C 0.14 1.63 5.86 85.56 0.50 2.13 16 8 N -0.67 -9.52 4.49 -490.87 -2.20 -11.72 16 9 C 0.09 0.98 3.35 45.82 0.15 1.13 16 10 H 0.13 0.71 7.84 -2.39 -0.02 0.70 16 11 C 0.07 1.26 6.49 86.48 0.56 1.82 16 12 N -0.62 -15.07 3.32 -807.26 -2.68 -17.76 16 13 C 0.55 20.18 7.93 87.66 0.70 20.87 16 14 O -0.57 -25.48 16.14 -3.03 -0.05 -25.53 16 15 C -0.12 -4.81 5.13 71.24 0.37 -4.45 16 16 S -0.15 -8.04 20.57 -56.49 -1.16 -9.20 16 17 C -0.55 -31.08 9.50 67.96 0.65 -30.44 16 18 H 0.08 4.28 7.80 -2.92 -0.02 4.26 16 19 C 0.01 0.83 5.49 84.86 0.47 1.29 16 20 N -0.91 -55.64 13.22 21.65 0.29 -55.35 16 21 Si 1.00 43.39 29.55 68.60 2.03 45.42 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 25 C 0.09 1.51 6.46 86.53 0.56 2.06 16 26 C -0.09 -0.98 3.66 -9.89 -0.04 -1.02 16 27 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 28 C -0.12 -1.86 8.09 71.98 0.58 -1.28 16 29 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.08 1.54 7.48 -2.39 -0.02 1.52 16 32 H 0.22 2.37 8.06 -2.91 -0.02 2.34 16 33 H 0.11 0.83 8.07 -2.39 -0.02 0.81 16 34 H 0.05 0.57 7.96 -2.39 -0.02 0.55 16 35 H 0.33 6.55 7.42 -89.70 -0.67 5.88 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.06 1.37 7.60 -2.39 -0.02 1.35 16 38 H 0.10 3.74 7.95 -2.40 -0.02 3.72 16 39 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 40 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.08 1.40 7.02 -2.39 -0.02 1.39 16 42 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.07 1.05 7.84 -2.38 -0.02 1.03 16 44 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.03 0.58 7.52 -2.39 -0.02 0.56 16 Total: -1.00 -78.15 387.52 2.98 -75.16 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.34 Total: 17.77 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 6.34 Total: -10.98 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -5.31 Total: -95.15 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: 0.75 Total: -23.02 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -8.04 SS G_CDS: -1.16 Total: -9.20 kcal Total: -78.15 2.98 -75.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700255371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.646 kcal (2) G-P(sol) polarization free energy of solvation -78.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds