Wall clock time and date at job start Tue Mar 31 2020 22:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35452 * 126.77721 * 2 1 4 4 C 1.41379 * 103.98814 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.79972 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47118 * 95.00636 * 5 4 3 7 7 C 1.46901 * 110.99871 * 179.97438 * 6 5 4 8 8 H 1.09002 * 110.64384 * 34.29471 * 7 6 5 9 9 C 1.55164 * 110.86867 * 271.04594 * 7 6 5 10 10 C 1.54913 * 101.57873 * 206.06516 * 9 7 6 11 11 N 1.47429 * 104.83336 * 37.00962 * 10 9 7 12 12 C 1.34767 * 125.64582 * 155.90632 * 11 10 9 13 13 O 1.21290 * 120.00019 * 179.97438 * 12 11 10 14 14 C 1.50705 * 120.00427 * 359.95815 * 12 11 10 15 15 S 1.81000 * 109.47299 * 180.02562 * 14 12 11 16 16 C 1.76200 * 99.99961 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99818 * 359.97438 * 16 15 14 18 18 C 1.38799 * 120.00008 * 179.97438 * 16 15 14 19 19 N 1.31628 * 120.00036 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00034 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47253 * 60.00104 * 20 18 16 22 22 H 1.48499 * 109.47190 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47013 * 300.00044 * 20 18 16 24 24 C 1.47026 * 108.70199 * 335.87085 * 11 10 9 25 25 H 1.08995 * 109.87918 * 120.47947 * 24 11 10 26 26 C 1.52993 * 109.87931 * 241.64207 * 24 11 10 27 27 N 1.30176 * 106.39157 * 0.26591 * 4 3 2 28 28 O 1.20919 * 111.60812 * 359.52977 * 27 4 3 29 29 H 1.08999 * 109.46850 * 89.99945 * 1 2 3 30 30 H 1.08997 * 109.46572 * 209.99732 * 1 2 3 31 31 H 1.08993 * 109.46978 * 329.99795 * 1 2 3 32 32 H 1.08007 * 128.00435 * 359.97438 * 3 2 1 33 33 H 1.08997 * 109.47513 * 334.99638 * 5 4 3 34 34 H 1.09009 * 109.46828 * 215.00156 * 5 4 3 35 35 H 1.00894 * 111.00281 * 56.03877 * 6 5 4 36 36 H 1.09001 * 111.00154 * 324.13750 * 9 7 6 37 37 H 1.08998 * 111.00269 * 87.99066 * 9 7 6 38 38 H 1.08998 * 110.36487 * 278.17111 * 10 9 7 39 39 H 1.08997 * 110.45987 * 155.89565 * 10 9 7 40 40 H 1.08995 * 109.46917 * 300.00272 * 14 12 11 41 41 H 1.09000 * 109.46563 * 59.99933 * 14 12 11 42 42 H 0.97000 * 120.00542 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.47029 * 177.80965 * 26 24 11 44 44 H 1.08999 * 109.47377 * 297.80919 * 26 24 11 45 45 H 1.08998 * 109.47566 * 57.80911 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 -0.0006 5 6 4.9210 1.3001 -0.0003 6 7 5.4048 1.4428 1.3794 7 6 6.6733 2.1827 1.4186 8 1 6.6976 2.9453 0.6402 9 6 7.8805 1.2178 1.2797 10 6 8.9981 2.0125 2.0002 11 7 8.3218 2.6747 3.1305 12 6 8.9145 3.0845 4.2694 13 8 8.2570 3.6209 5.1361 14 6 10.3940 2.8761 4.4663 15 16 10.8854 3.5276 6.0819 16 6 12.6089 3.1631 6.0474 17 1 13.0405 2.6750 5.1860 18 6 13.4119 3.5031 7.1273 19 7 12.8860 4.0984 8.1769 20 14 15.2390 3.1161 7.0911 21 1 15.8699 3.8128 5.9415 22 1 15.8677 3.5765 8.3552 23 1 15.4318 1.6506 6.9481 24 6 6.8940 2.8146 2.8091 25 1 6.2936 2.2917 3.5535 26 6 6.5112 4.2955 2.7744 27 7 3.4764 -0.7563 -0.0067 28 8 2.3096 -1.0736 -0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 2.0345 2.1271 -0.0004 33 1 4.7629 2.2876 -0.4340 34 1 5.6604 0.7584 -0.5904 35 1 5.4977 0.5424 1.8249 36 1 7.6850 0.2723 1.7856 37 1 8.1310 1.0539 0.2317 38 1 9.4292 2.7547 1.3284 39 1 9.7720 1.3367 2.3643 40 1 10.6201 1.8109 4.4204 41 1 10.9419 3.3980 3.6817 42 1 13.4471 4.3364 8.9314 43 1 5.4614 4.3930 2.4976 44 1 6.6696 4.7349 3.7592 45 1 7.1298 4.8136 2.0416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700811290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:26 Heat of formation + Delta-G solvation = 28.889342 kcal Electronic energy + Delta-G solvation = -26146.147138 eV Core-core repulsion = 22293.242959 eV Total energy + Delta-G solvation = -3852.904179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.28352 -40.16399 -37.89755 -35.99508 -34.16600 -33.42478 -32.42028 -31.67487 -30.73202 -28.56420 -28.22767 -26.85345 -25.47322 -24.45008 -23.38050 -22.81717 -21.22054 -20.41427 -18.89601 -18.01561 -17.71828 -17.57310 -16.80391 -16.40994 -15.70883 -15.28033 -14.84492 -14.82557 -14.77727 -14.23806 -14.03394 -13.89487 -13.76700 -13.66597 -13.48103 -13.05484 -12.80725 -12.75732 -12.69791 -12.50055 -12.45757 -12.10553 -11.71641 -11.62279 -11.52117 -11.16957 -11.03631 -11.03004 -10.87936 -10.76013 -10.56971 -9.81300 -9.70796 -9.32301 -9.05034 -8.84662 -8.47675 -8.22230 -6.48887 -6.20443 -3.91090 1.08542 1.79863 2.72100 2.89026 3.10623 3.23975 3.25737 3.29487 3.55904 3.68977 3.91230 4.02899 4.21262 4.28823 4.37574 4.59454 4.67508 4.74115 4.83374 4.88950 4.96279 5.04391 5.08004 5.13033 5.14465 5.18045 5.26688 5.36733 5.42554 5.47140 5.49265 5.59158 5.64804 5.66323 5.75246 5.78594 5.92468 6.06978 6.14896 6.33070 6.47444 6.62592 6.86511 7.59970 7.71746 7.89340 8.35884 8.60928 9.24525 10.86911 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030082 B = 0.001797 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.569528 B =15579.206212 C =15874.462502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.036 4.036 3 C -0.218 4.218 4 C 0.023 3.977 5 C 0.140 3.860 6 N -0.672 5.672 7 C 0.083 3.917 8 H 0.098 0.902 9 C -0.165 4.165 10 C 0.105 3.895 11 N -0.624 5.624 12 C 0.550 3.450 13 O -0.512 6.512 14 C -0.147 4.147 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.147 3.853 25 H 0.080 0.920 26 C -0.157 4.157 27 N -0.362 5.362 28 O 0.099 5.901 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.172 0.828 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.349 0.651 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.269 0.731 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.301 -7.020 -22.353 32.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 C -0.240 4.240 4 C -0.136 4.136 5 C 0.011 3.989 6 N -0.304 5.304 7 C -0.028 4.028 8 H 0.116 0.884 9 C -0.205 4.205 10 C -0.019 4.019 11 N -0.362 5.362 12 C 0.338 3.662 13 O -0.386 6.386 14 C -0.298 4.298 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.200 1.200 24 C 0.043 3.957 25 H 0.098 0.902 26 C -0.215 4.215 27 N -0.067 5.067 28 O 0.032 5.968 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.189 0.811 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.169 0.831 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.745 -6.587 -20.673 31.434 hybrid contribution 2.305 -0.811 -1.419 2.826 sum -20.441 -7.398 -22.092 30.994 Atomic orbital electron populations 1.20345 0.83972 1.04812 1.04067 1.24533 0.96443 0.86139 1.02783 1.22403 0.91155 1.01047 1.09350 1.23406 0.97365 0.89836 1.03032 1.20187 0.89353 0.98802 0.90599 1.60373 1.29273 1.24887 1.15839 1.22703 0.86565 0.95837 0.97682 0.88399 1.23525 0.96571 0.99076 1.01329 1.22180 0.95488 0.95897 0.88376 1.48586 1.08715 1.61554 1.17360 1.19982 0.89300 0.77270 0.79625 1.90699 1.65378 1.41413 1.41113 1.23517 0.93674 1.05104 1.07473 1.85392 1.08142 1.77750 1.11984 1.22823 0.93306 1.45968 1.06347 0.91023 1.24983 0.99396 0.94604 0.94538 1.70006 1.36262 1.38076 1.05911 0.86230 0.82855 0.78826 0.77623 1.19947 1.20789 1.19960 1.21334 0.82253 0.96798 0.95307 0.90151 1.22076 1.00991 0.95043 1.03433 1.73851 0.97141 1.16403 1.19256 1.84818 1.11254 1.33261 1.67464 0.89434 0.89784 0.88923 0.81085 0.88485 0.93062 0.83131 0.90289 0.89904 0.91293 0.90208 0.89436 0.89383 0.92128 0.91693 0.90863 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.20 10.45 36.01 0.38 0.18 16 2 C -0.04 -0.24 7.49 -35.30 -0.26 -0.50 16 3 C -0.22 -1.55 11.06 -39.38 -0.44 -1.99 16 4 C 0.02 0.20 6.84 -82.10 -0.56 -0.36 16 5 C 0.14 1.02 6.15 -4.98 -0.03 0.99 16 6 N -0.67 -5.74 6.29 -106.05 -0.67 -6.41 16 7 C 0.08 0.73 2.77 -65.87 -0.18 0.54 16 8 H 0.10 0.75 7.57 -51.93 -0.39 0.36 16 9 C -0.17 -1.37 6.67 -24.58 -0.16 -1.53 16 10 C 0.10 1.13 6.69 -2.52 -0.02 1.11 16 11 N -0.62 -9.15 3.06 -163.02 -0.50 -9.65 16 12 C 0.55 10.79 7.66 -10.99 -0.08 10.70 16 13 O -0.51 -11.97 14.91 5.55 0.08 -11.88 16 14 C -0.15 -3.07 5.16 36.01 0.19 -2.88 16 15 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 16 C -0.54 -15.42 9.50 30.94 0.29 -15.13 16 17 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 18 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 19 N -0.87 -26.34 13.22 55.49 0.73 -25.60 16 20 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C 0.15 1.85 3.21 -66.95 -0.22 1.63 16 25 H 0.08 1.15 8.03 -51.93 -0.42 0.73 16 26 C -0.16 -1.99 9.09 37.15 0.34 -1.65 16 27 N -0.36 -3.80 12.07 33.42 0.40 -3.40 16 28 O 0.10 0.93 11.20 17.17 0.19 1.12 16 29 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.17 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 34 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 35 H 0.35 3.23 8.26 -39.29 -0.32 2.91 16 36 H 0.08 0.69 7.80 -51.93 -0.41 0.28 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.86 7.47 -51.93 -0.39 0.47 16 40 H 0.09 1.70 7.85 -51.92 -0.41 1.30 16 41 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 42 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 1.17 6.90 -51.93 -0.36 0.81 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 389.84 15.07 5.87 5.87 Total: -1.00 -35.67 389.84 -8.86 -44.52 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -6.88 Total: -0.39 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -0.86 Total: -6.86 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.03 Total: -45.06 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.28 Total: -10.77 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.67 -8.86 -44.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700811290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.413 kcal (2) G-P(sol) polarization free energy of solvation -35.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds