Wall clock time and date at job start Tue Mar 31 2020 22:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35452 * 126.77721 * 2 1 4 4 C 1.41379 * 103.98814 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.79972 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47118 * 95.00636 * 5 4 3 7 7 C 1.46901 * 110.99871 * 179.97438 * 6 5 4 8 8 H 1.09002 * 110.64384 * 34.29471 * 7 6 5 9 9 C 1.55164 * 110.86867 * 271.04594 * 7 6 5 10 10 C 1.54913 * 101.57873 * 206.06516 * 9 7 6 11 11 N 1.47429 * 104.83336 * 37.00962 * 10 9 7 12 12 C 1.34767 * 125.64582 * 155.90632 * 11 10 9 13 13 O 1.21290 * 120.00019 * 179.97438 * 12 11 10 14 14 C 1.50705 * 120.00427 * 359.95815 * 12 11 10 15 15 S 1.81000 * 109.47299 * 180.02562 * 14 12 11 16 16 C 1.76200 * 99.99961 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99818 * 359.97438 * 16 15 14 18 18 C 1.38799 * 120.00008 * 179.97438 * 16 15 14 19 19 N 1.31628 * 120.00036 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00034 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47253 * 60.00104 * 20 18 16 22 22 H 1.48499 * 109.47190 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47013 * 300.00044 * 20 18 16 24 24 C 1.47026 * 108.70199 * 335.87085 * 11 10 9 25 25 H 1.08995 * 109.87918 * 120.47947 * 24 11 10 26 26 C 1.52993 * 109.87931 * 241.64207 * 24 11 10 27 27 N 1.30176 * 106.39157 * 0.26591 * 4 3 2 28 28 O 1.20919 * 111.60812 * 359.52977 * 27 4 3 29 29 H 1.08999 * 109.46850 * 89.99945 * 1 2 3 30 30 H 1.08997 * 109.46572 * 209.99732 * 1 2 3 31 31 H 1.08993 * 109.46978 * 329.99795 * 1 2 3 32 32 H 1.08007 * 128.00435 * 359.97438 * 3 2 1 33 33 H 1.08997 * 109.47513 * 334.99638 * 5 4 3 34 34 H 1.09009 * 109.46828 * 215.00156 * 5 4 3 35 35 H 1.00894 * 111.00281 * 56.03877 * 6 5 4 36 36 H 1.09001 * 111.00154 * 324.13750 * 9 7 6 37 37 H 1.08998 * 111.00269 * 87.99066 * 9 7 6 38 38 H 1.08998 * 110.36487 * 278.17111 * 10 9 7 39 39 H 1.08997 * 110.45987 * 155.89565 * 10 9 7 40 40 H 1.08995 * 109.46917 * 300.00272 * 14 12 11 41 41 H 1.09000 * 109.46563 * 59.99933 * 14 12 11 42 42 H 0.97000 * 120.00542 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.47029 * 177.80965 * 26 24 11 44 44 H 1.08999 * 109.47377 * 297.80919 * 26 24 11 45 45 H 1.08998 * 109.47566 * 57.80911 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 -0.0006 5 6 4.9210 1.3001 -0.0003 6 7 5.4048 1.4428 1.3794 7 6 6.6733 2.1827 1.4186 8 1 6.6976 2.9453 0.6402 9 6 7.8805 1.2178 1.2797 10 6 8.9981 2.0125 2.0002 11 7 8.3218 2.6747 3.1305 12 6 8.9145 3.0845 4.2694 13 8 8.2570 3.6209 5.1361 14 6 10.3940 2.8761 4.4663 15 16 10.8854 3.5276 6.0819 16 6 12.6089 3.1631 6.0474 17 1 13.0405 2.6750 5.1860 18 6 13.4119 3.5031 7.1273 19 7 12.8860 4.0984 8.1769 20 14 15.2390 3.1161 7.0911 21 1 15.8699 3.8128 5.9415 22 1 15.8677 3.5765 8.3552 23 1 15.4318 1.6506 6.9481 24 6 6.8940 2.8146 2.8091 25 1 6.2936 2.2917 3.5535 26 6 6.5112 4.2955 2.7744 27 7 3.4764 -0.7563 -0.0067 28 8 2.3096 -1.0736 -0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 2.0345 2.1271 -0.0004 33 1 4.7629 2.2876 -0.4340 34 1 5.6604 0.7584 -0.5904 35 1 5.4977 0.5424 1.8249 36 1 7.6850 0.2723 1.7856 37 1 8.1310 1.0539 0.2317 38 1 9.4292 2.7547 1.3284 39 1 9.7720 1.3367 2.3643 40 1 10.6201 1.8109 4.4204 41 1 10.9419 3.3980 3.6817 42 1 13.4471 4.3364 8.9314 43 1 5.4614 4.3930 2.4976 44 1 6.6696 4.7349 3.7592 45 1 7.1298 4.8136 2.0416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700811290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:26 Heat of formation + Delta-G solvation = 4.008271 kcal Electronic energy + Delta-G solvation = -26147.226062 eV Core-core repulsion = 22293.242959 eV Total energy + Delta-G solvation = -3853.983103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.87410 -41.31865 -39.10021 -36.83159 -34.77029 -34.59845 -34.06359 -32.73964 -31.77049 -29.96881 -28.62166 -27.70407 -27.56198 -25.26972 -23.95444 -23.90282 -22.05271 -21.03029 -20.30906 -19.46866 -18.63873 -18.21911 -18.08744 -17.48464 -16.89256 -16.71543 -16.20022 -16.15127 -15.75108 -15.48115 -15.03786 -14.70103 -14.64974 -14.50256 -14.08421 -13.98660 -13.92482 -13.82153 -13.63258 -13.31470 -13.18395 -13.15404 -13.11781 -12.87996 -12.82980 -12.68188 -12.53783 -12.15212 -11.91350 -11.80471 -11.72433 -11.19129 -11.14046 -10.88694 -10.30101 -10.21657 -9.72388 -9.49159 -8.69351 -8.35507 -6.14588 0.54247 1.19520 1.26254 1.43135 1.43967 1.54122 1.57427 2.05306 2.26331 2.26908 2.98364 3.00712 3.20708 3.29388 3.45435 3.55448 3.61342 3.89781 3.98002 4.16737 4.18383 4.21972 4.27313 4.33747 4.34312 4.39841 4.43340 4.56614 4.61639 4.71369 4.73321 4.74961 4.76163 4.92644 4.95139 5.03936 5.05476 5.08298 5.26868 5.29037 5.39800 5.44644 5.88256 6.14983 6.18189 6.40209 7.05153 7.13582 7.31954 8.73554 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030082 B = 0.001797 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.569528 B =15579.206212 C =15874.462502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.033 4.033 3 C -0.230 4.230 4 C 0.014 3.986 5 C 0.144 3.856 6 N -0.678 5.678 7 C 0.099 3.901 8 H 0.121 0.879 9 C -0.153 4.153 10 C 0.093 3.907 11 N -0.615 5.615 12 C 0.546 3.454 13 O -0.562 6.562 14 C -0.120 4.120 15 S -0.150 6.150 16 C -0.548 4.548 17 H 0.082 0.918 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.261 1.261 22 H -0.278 1.278 23 H -0.262 1.262 24 C 0.141 3.859 25 H 0.057 0.943 26 C -0.150 4.150 27 N -0.397 5.397 28 O 0.079 5.921 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.192 0.808 33 H 0.117 0.883 34 H 0.058 0.942 35 H 0.344 0.656 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.272 0.728 43 H 0.085 0.915 44 H 0.031 0.969 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.165 -7.665 -25.584 34.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.096 4.096 3 C -0.252 4.252 4 C -0.145 4.145 5 C 0.015 3.985 6 N -0.309 5.309 7 C -0.012 4.012 8 H 0.139 0.861 9 C -0.193 4.193 10 C -0.029 4.029 11 N -0.350 5.350 12 C 0.334 3.666 13 O -0.441 6.441 14 C -0.271 4.271 15 S 0.077 5.923 16 C -0.696 4.696 17 H 0.101 0.899 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.821 3.179 21 H -0.185 1.185 22 H -0.203 1.203 23 H -0.187 1.187 24 C 0.037 3.963 25 H 0.075 0.925 26 C -0.208 4.208 27 N -0.104 5.104 28 O 0.015 5.985 29 H 0.122 0.878 30 H 0.108 0.892 31 H 0.126 0.874 32 H 0.209 0.791 33 H 0.135 0.865 34 H 0.076 0.924 35 H 0.162 0.838 36 H 0.092 0.908 37 H 0.133 0.867 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.051 0.949 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.648 -7.266 -23.973 33.770 hybrid contribution 2.093 -0.635 -0.506 2.245 sum -20.555 -7.901 -24.479 32.926 Atomic orbital electron populations 1.20558 0.81260 1.05874 1.05438 1.25270 0.97921 0.85405 1.01049 1.22746 0.90583 1.02169 1.09668 1.23796 0.98628 0.89673 1.02393 1.20279 0.88817 0.99738 0.89700 1.60305 1.29078 1.24625 1.16877 1.22555 0.86997 0.96308 0.95293 0.86071 1.23506 0.94900 0.98124 1.02721 1.22566 0.96371 0.96626 0.87370 1.48518 1.10062 1.59802 1.16630 1.19743 0.88680 0.77490 0.80670 1.90681 1.66061 1.44043 1.43295 1.23310 0.95010 1.05568 1.03202 1.85586 1.09413 1.79170 1.18098 1.23164 0.93273 1.46141 1.07017 0.89940 1.26140 1.05061 0.94032 0.93843 1.70178 1.38397 1.39325 1.06818 0.84995 0.75717 0.79148 0.78076 1.18540 1.20306 1.18694 1.21519 0.80466 0.96998 0.97282 0.92493 1.21997 1.02610 0.94834 1.01383 1.73840 0.97909 1.17523 1.21123 1.84769 1.11362 1.34398 1.68001 0.87753 0.89183 0.87355 0.79057 0.86514 0.92416 0.83763 0.90786 0.86730 0.89131 0.90074 0.87851 0.87551 0.91951 0.89601 0.94937 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.45 71.24 0.74 0.50 16 2 C -0.03 -0.40 7.49 25.04 0.19 -0.21 16 3 C -0.23 -2.88 11.06 22.40 0.25 -2.63 16 4 C 0.01 0.22 6.84 43.58 0.30 0.52 16 5 C 0.14 1.71 6.15 85.56 0.53 2.24 16 6 N -0.68 -10.12 6.29 -489.43 -3.08 -13.19 16 7 C 0.10 1.45 2.77 46.11 0.13 1.58 16 8 H 0.12 1.31 7.57 -2.39 -0.02 1.29 16 9 C -0.15 -2.01 6.67 31.99 0.21 -1.79 16 10 C 0.09 1.74 6.69 86.86 0.58 2.32 16 11 N -0.61 -17.47 3.06 -788.05 -2.42 -19.88 16 12 C 0.55 21.78 7.66 87.66 0.67 22.45 16 13 O -0.56 -27.63 14.91 -3.06 -0.05 -27.68 16 14 C -0.12 -5.00 5.16 71.24 0.37 -4.64 16 15 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 16 C -0.55 -31.81 9.50 67.95 0.65 -31.16 16 17 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 18 C 0.01 0.81 5.49 84.86 0.47 1.28 16 19 N -0.91 -56.63 13.22 21.65 0.29 -56.34 16 20 Si 1.00 43.93 29.55 68.60 2.03 45.95 16 21 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 22 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 24 C 0.14 3.42 3.21 45.34 0.15 3.56 16 25 H 0.06 1.66 8.03 -2.39 -0.02 1.64 16 26 C -0.15 -3.70 9.09 71.98 0.65 -3.04 16 27 N -0.40 -8.13 12.07 -49.55 -0.60 -8.73 16 28 O 0.08 1.45 11.20 71.62 0.80 2.25 16 29 H 0.10 0.03 8.14 -2.39 -0.02 0.02 16 30 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 33 H 0.12 0.93 8.08 -2.39 -0.02 0.91 16 34 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.34 5.92 8.26 -89.70 -0.74 5.18 16 36 H 0.07 1.09 7.80 -2.39 -0.02 1.08 16 37 H 0.11 0.89 8.14 -2.39 -0.02 0.88 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.53 7.47 -2.39 -0.02 1.52 16 40 H 0.10 3.96 7.85 -2.40 -0.02 3.94 16 41 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 42 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 43 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.03 1.06 6.90 -2.39 -0.02 1.05 16 45 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -82.41 389.84 1.95 -80.45 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.26 Total: 15.93 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 5.88 Total: -9.04 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -5.80 Total: -98.14 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: 0.76 Total: -25.43 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -82.41 1.95 -80.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700811290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.462 kcal (2) G-P(sol) polarization free energy of solvation -82.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds