Wall clock time and date at job start Tue Mar 31 2020 22:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33811 * 122.44773 * 2 1 4 4 S 1.70622 * 110.95259 * 179.78198 * 3 2 1 5 5 C 1.75829 * 91.56505 * 0.30161 * 4 3 2 6 6 C 1.46576 * 125.46106 * 179.97438 * 5 4 3 7 7 O 1.21704 * 120.00049 * 179.69350 * 6 5 4 8 8 N 1.34777 * 119.99910 * 359.69935 * 6 5 4 9 9 C 1.46506 * 119.99873 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47035 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.46969 * 179.97438 * 10 9 8 12 12 N 1.46905 * 109.46987 * 179.97438 * 11 10 9 13 13 C 1.46899 * 110.99719 * 66.04428 * 12 11 10 14 14 C 1.46898 * 111.00238 * 190.00244 * 12 11 10 15 15 C 1.50694 * 109.47383 * 170.00252 * 14 12 11 16 16 O 1.21297 * 120.00072 * 359.97438 * 15 14 12 17 17 N 1.34774 * 120.00023 * 179.97438 * 15 14 12 18 18 C 1.37103 * 119.99897 * 179.97438 * 17 15 14 19 19 H 1.07992 * 119.99885 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99918 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99725 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99960 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47197 * 90.00436 * 22 20 18 24 24 H 1.48500 * 109.46897 * 210.00594 * 22 20 18 25 25 H 1.48501 * 109.47044 * 330.00075 * 22 20 18 26 26 C 1.36654 * 109.08150 * 359.70049 * 5 4 3 27 27 H 1.08996 * 109.47735 * 269.97911 * 1 2 3 28 28 H 1.09005 * 109.47333 * 29.98310 * 1 2 3 29 29 H 1.09001 * 109.47266 * 149.97815 * 1 2 3 30 30 H 1.07997 * 124.52933 * 0.02562 * 3 2 1 31 31 H 0.96999 * 120.00047 * 359.97438 * 8 6 5 32 32 H 1.09004 * 109.47073 * 299.99562 * 9 8 6 33 33 H 1.09000 * 109.47212 * 59.99645 * 9 8 6 34 34 H 1.09004 * 109.46930 * 299.99770 * 10 9 8 35 35 H 1.09004 * 109.47059 * 59.99372 * 10 9 8 36 36 H 1.08992 * 109.47534 * 299.99582 * 11 10 9 37 37 H 1.08996 * 109.47134 * 60.00388 * 11 10 9 38 38 H 1.09004 * 109.47128 * 60.00579 * 13 12 11 39 39 H 1.09001 * 109.47118 * 179.97438 * 13 12 11 40 40 H 1.08997 * 109.47407 * 300.00126 * 13 12 11 41 41 H 1.09002 * 109.46532 * 290.00187 * 14 12 11 42 42 H 1.08999 * 109.47255 * 49.99338 * 14 12 11 43 43 H 0.96997 * 120.00226 * 0.02562 * 17 15 14 44 44 H 0.97007 * 119.99235 * 179.97438 * 21 20 18 45 45 H 1.07996 * 123.35303 * 180.24946 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1292 0.0000 4 16 3.8969 0.7892 0.0061 5 6 3.5937 -0.9427 -0.0006 6 6 4.6231 -1.9862 0.0000 7 8 4.3001 -3.1596 0.0006 8 7 5.9272 -1.6463 -0.0001 9 6 6.9561 -2.6893 -0.0001 10 6 8.3412 -2.0393 -0.0008 11 6 9.4156 -3.1285 -0.0001 12 7 10.7455 -2.5045 -0.0014 13 6 10.9861 -1.7754 1.2510 14 6 11.7958 -3.5037 -0.2390 15 6 13.1094 -2.8048 -0.4777 16 8 13.1652 -1.5934 -0.4528 17 7 14.2222 -3.5259 -0.7188 18 6 15.4172 -2.8900 -0.9364 19 1 15.4668 -1.8114 -0.9142 20 6 16.5647 -3.6334 -1.1844 21 7 16.5043 -4.9459 -1.2109 22 14 18.1930 -2.7671 -1.4802 23 1 18.8953 -2.5777 -0.1857 24 1 19.0349 -3.5911 -2.3843 25 1 17.9431 -1.4438 -2.1061 26 6 2.2446 -1.1601 -0.0003 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3634 0.8902 -0.5136 29 1 -0.3634 -0.8898 -0.5142 30 1 1.8025 2.1232 0.0004 31 1 6.1847 -0.7111 -0.0009 32 1 6.8455 -3.3087 0.8900 33 1 6.8454 -3.3089 -0.8900 34 1 8.4515 -1.4201 -0.8911 35 1 8.4521 -1.4194 0.8889 36 1 9.3052 -3.7473 0.8903 37 1 9.3049 -3.7486 -0.8896 38 1 10.9254 -2.4669 2.0914 39 1 11.9777 -1.3236 1.2237 40 1 10.2340 -0.9951 1.3674 41 1 11.8828 -4.1533 0.6319 42 1 11.5378 -4.1011 -1.1135 43 1 14.1776 -4.4946 -0.7390 44 1 17.3053 -5.4647 -1.3844 45 1 1.8019 -2.1452 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001712946004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:43 Heat of formation + Delta-G solvation = -40.873364 kcal Electronic energy + Delta-G solvation = -25231.735087 eV Core-core repulsion = 21375.805771 eV Total energy + Delta-G solvation = -3855.929317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.10507 -38.71672 -38.42871 -36.92184 -35.26406 -33.85544 -32.12644 -31.25508 -31.01874 -28.35665 -27.86111 -26.73110 -25.10325 -24.22219 -22.58547 -21.30760 -20.60525 -19.43216 -19.15121 -18.67332 -17.82402 -16.70514 -16.29760 -16.14955 -15.91021 -15.33040 -15.13660 -14.73172 -14.62455 -14.49053 -14.15243 -13.96354 -13.65719 -13.61187 -13.42361 -13.34261 -12.66543 -12.53780 -12.42249 -12.27266 -12.13042 -11.88345 -11.72672 -11.47878 -11.36566 -11.25460 -11.23965 -10.91784 -10.74136 -10.39573 -10.38510 -10.20962 -9.50700 -9.46880 -9.23676 -8.86500 -8.44808 -7.97032 -7.84943 -6.40900 -3.81665 0.07414 1.02573 1.42964 1.91190 2.75793 2.86085 3.18222 3.26912 3.32780 3.91414 3.98266 4.24666 4.34506 4.48936 4.68633 4.80268 4.84365 4.92044 5.03440 5.09092 5.09377 5.14847 5.26087 5.38663 5.40237 5.45712 5.49859 5.58760 5.70015 5.74031 5.85109 5.91287 5.93617 5.96216 5.99339 6.05418 6.12762 6.29567 6.55654 7.08540 7.26814 7.39208 7.56002 7.80614 8.07424 8.62931 9.19069 9.55626 10.07521 10.76860 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035872 B = 0.001463 C = 0.001425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.371264 B =19135.741014 C =19650.895462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.118 4.118 3 C -0.234 4.234 4 S 0.203 5.797 5 C -0.265 4.265 6 C 0.590 3.410 7 O -0.529 6.529 8 N -0.724 5.724 9 C 0.121 3.879 10 C -0.129 4.129 11 C 0.058 3.942 12 N -0.519 5.519 13 C 0.020 3.980 14 C 0.046 3.954 15 C 0.444 3.556 16 O -0.578 6.578 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.052 4.052 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.169 0.831 31 H 0.399 0.601 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.034 0.966 37 H 0.076 0.924 38 H 0.014 0.986 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.088 0.912 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.652 8.179 3.847 30.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.131 4.131 3 C -0.372 4.372 4 S 0.472 5.528 5 C -0.385 4.385 6 C 0.376 3.624 7 O -0.407 6.407 8 N -0.375 5.375 9 C -0.002 4.002 10 C -0.167 4.167 11 C -0.071 4.071 12 N -0.243 5.243 13 C -0.128 4.128 14 C -0.086 4.086 15 C 0.229 3.771 16 O -0.462 6.462 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.086 4.086 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.186 0.814 31 H 0.233 0.767 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.032 0.968 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.106 0.894 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -28.295 9.259 3.446 29.971 hybrid contribution -0.422 -1.187 0.485 1.350 sum -28.717 8.072 3.931 30.088 Atomic orbital electron populations 1.20524 0.89263 1.03018 1.02547 1.18803 0.98070 0.91469 1.04725 1.25165 0.98494 1.03470 1.10060 1.83062 1.04081 0.97995 1.67697 1.24614 0.98023 0.97294 1.18559 1.16931 0.81647 0.87400 0.76458 1.90845 1.81690 1.18210 1.49990 1.45878 1.05459 1.10625 1.75576 1.21405 0.85982 0.89998 1.02860 1.21794 0.91838 0.99197 1.03857 1.21994 0.88763 0.95247 1.01065 1.61542 1.00182 1.26560 1.35992 1.22579 1.04604 0.97512 0.88088 1.21863 0.92025 0.93472 1.01193 1.19740 0.84742 0.88143 0.84436 1.90480 1.85658 1.13787 1.56317 1.41869 1.06969 1.09096 1.62176 1.19699 0.84281 0.93747 1.45133 0.87919 1.25256 0.99808 0.95446 0.97418 1.69618 1.30352 1.04689 1.49669 0.85860 0.81088 0.79112 0.78244 1.20455 1.20938 1.19416 1.20684 0.90985 1.00059 0.96859 0.91043 0.91418 0.91175 0.81352 0.76662 0.91124 0.90860 0.90047 0.91014 0.94809 0.90515 0.96789 0.88616 0.92113 0.93446 0.89357 0.77490 0.91895 0.82869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.42 10.13 36.00 0.36 -0.06 16 2 C -0.12 -0.80 5.78 -106.46 -0.62 -1.41 16 3 C -0.23 -1.41 10.67 29.18 0.31 -1.10 16 4 S 0.20 1.32 22.16 -107.50 -2.38 -1.06 16 5 C -0.26 -2.45 6.45 -36.79 -0.24 -2.69 16 6 C 0.59 6.68 7.78 -12.90 -0.10 6.58 16 7 O -0.53 -7.81 16.84 5.19 0.09 -7.72 16 8 N -0.72 -6.76 5.55 -61.64 -0.34 -7.11 16 9 C 0.12 1.17 5.67 -4.04 -0.02 1.15 16 10 C -0.13 -1.28 5.25 -26.73 -0.14 -1.42 16 11 C 0.06 0.70 4.96 -3.82 -0.02 0.68 16 12 N -0.52 -8.41 4.50 -244.38 -1.10 -9.51 16 13 C 0.02 0.32 8.96 60.06 0.54 0.85 16 14 C 0.05 0.81 5.45 -4.98 -0.03 0.79 16 15 C 0.44 10.42 7.47 -10.99 -0.08 10.34 16 16 O -0.58 -15.42 13.91 5.54 0.08 -15.34 16 17 N -0.56 -14.26 5.29 -10.97 -0.06 -14.32 16 18 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 22 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 C -0.05 -0.45 9.80 -40.43 -0.40 -0.85 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.23 8.12 -51.93 -0.42 -0.19 16 29 H 0.07 0.28 8.13 -51.93 -0.42 -0.14 16 30 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 31 H 0.40 2.92 7.59 -40.82 -0.31 2.61 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.69 6.55 -51.93 -0.34 0.35 16 36 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 37 H 0.08 0.87 7.93 -51.93 -0.41 0.46 16 38 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.10 1.86 5.82 -51.93 -0.30 1.56 16 40 H 0.06 0.82 6.47 -51.93 -0.34 0.48 16 41 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 42 H 0.09 1.42 7.93 -51.93 -0.41 1.00 16 43 H 0.39 9.49 7.90 -40.82 -0.32 9.16 16 44 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 390.70 15.07 5.89 5.89 Total: -1.00 -33.46 390.70 -9.39 -42.85 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.59 Total: 9.23 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -0.67 Total: 4.90 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.78 Total: -54.73 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: 0.16 Total: -23.06 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.38 Total: -1.06 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.46 -9.39 -42.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712946004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.978 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds