Wall clock time and date at job start Tue Mar 31 2020 22:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33811 * 122.44773 * 2 1 4 4 S 1.70622 * 110.95259 * 179.78198 * 3 2 1 5 5 C 1.75829 * 91.56505 * 0.30161 * 4 3 2 6 6 C 1.46576 * 125.46106 * 179.97438 * 5 4 3 7 7 O 1.21704 * 120.00049 * 179.69350 * 6 5 4 8 8 N 1.34777 * 119.99910 * 359.69935 * 6 5 4 9 9 C 1.46506 * 119.99873 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47035 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.46969 * 179.97438 * 10 9 8 12 12 N 1.46905 * 109.46987 * 179.97438 * 11 10 9 13 13 C 1.46899 * 110.99719 * 66.04428 * 12 11 10 14 14 C 1.46898 * 111.00238 * 190.00244 * 12 11 10 15 15 C 1.50694 * 109.47383 * 170.00252 * 14 12 11 16 16 O 1.21297 * 120.00072 * 359.97438 * 15 14 12 17 17 N 1.34774 * 120.00023 * 179.97438 * 15 14 12 18 18 C 1.37103 * 119.99897 * 179.97438 * 17 15 14 19 19 H 1.07992 * 119.99885 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99918 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99725 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99960 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47197 * 90.00436 * 22 20 18 24 24 H 1.48500 * 109.46897 * 210.00594 * 22 20 18 25 25 H 1.48501 * 109.47044 * 330.00075 * 22 20 18 26 26 C 1.36654 * 109.08150 * 359.70049 * 5 4 3 27 27 H 1.08996 * 109.47735 * 269.97911 * 1 2 3 28 28 H 1.09005 * 109.47333 * 29.98310 * 1 2 3 29 29 H 1.09001 * 109.47266 * 149.97815 * 1 2 3 30 30 H 1.07997 * 124.52933 * 0.02562 * 3 2 1 31 31 H 0.96999 * 120.00047 * 359.97438 * 8 6 5 32 32 H 1.09004 * 109.47073 * 299.99562 * 9 8 6 33 33 H 1.09000 * 109.47212 * 59.99645 * 9 8 6 34 34 H 1.09004 * 109.46930 * 299.99770 * 10 9 8 35 35 H 1.09004 * 109.47059 * 59.99372 * 10 9 8 36 36 H 1.08992 * 109.47534 * 299.99582 * 11 10 9 37 37 H 1.08996 * 109.47134 * 60.00388 * 11 10 9 38 38 H 1.09004 * 109.47128 * 60.00579 * 13 12 11 39 39 H 1.09001 * 109.47118 * 179.97438 * 13 12 11 40 40 H 1.08997 * 109.47407 * 300.00126 * 13 12 11 41 41 H 1.09002 * 109.46532 * 290.00187 * 14 12 11 42 42 H 1.08999 * 109.47255 * 49.99338 * 14 12 11 43 43 H 0.96997 * 120.00226 * 0.02562 * 17 15 14 44 44 H 0.97007 * 119.99235 * 179.97438 * 21 20 18 45 45 H 1.07996 * 123.35303 * 180.24946 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1292 0.0000 4 16 3.8969 0.7892 0.0061 5 6 3.5937 -0.9427 -0.0006 6 6 4.6231 -1.9862 0.0000 7 8 4.3001 -3.1596 0.0006 8 7 5.9272 -1.6463 -0.0001 9 6 6.9561 -2.6893 -0.0001 10 6 8.3412 -2.0393 -0.0008 11 6 9.4156 -3.1285 -0.0001 12 7 10.7455 -2.5045 -0.0014 13 6 10.9861 -1.7754 1.2510 14 6 11.7958 -3.5037 -0.2390 15 6 13.1094 -2.8048 -0.4777 16 8 13.1652 -1.5934 -0.4528 17 7 14.2222 -3.5259 -0.7188 18 6 15.4172 -2.8900 -0.9364 19 1 15.4668 -1.8114 -0.9142 20 6 16.5647 -3.6334 -1.1844 21 7 16.5043 -4.9459 -1.2109 22 14 18.1930 -2.7671 -1.4802 23 1 18.8953 -2.5777 -0.1857 24 1 19.0349 -3.5911 -2.3843 25 1 17.9431 -1.4438 -2.1061 26 6 2.2446 -1.1601 -0.0003 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3634 0.8902 -0.5136 29 1 -0.3634 -0.8898 -0.5142 30 1 1.8025 2.1232 0.0004 31 1 6.1847 -0.7111 -0.0009 32 1 6.8455 -3.3087 0.8900 33 1 6.8454 -3.3089 -0.8900 34 1 8.4515 -1.4201 -0.8911 35 1 8.4521 -1.4194 0.8889 36 1 9.3052 -3.7473 0.8903 37 1 9.3049 -3.7486 -0.8896 38 1 10.9254 -2.4669 2.0914 39 1 11.9777 -1.3236 1.2237 40 1 10.2340 -0.9951 1.3674 41 1 11.8828 -4.1533 0.6319 42 1 11.5378 -4.1011 -1.1135 43 1 14.1776 -4.4946 -0.7390 44 1 17.3053 -5.4647 -1.3844 45 1 1.8019 -2.1452 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001712946004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:42 Heat of formation + Delta-G solvation = -65.179426 kcal Electronic energy + Delta-G solvation = -25232.789077 eV Core-core repulsion = 21375.805771 eV Total energy + Delta-G solvation = -3856.983307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.92443 -40.35805 -39.06049 -38.23751 -36.31761 -35.78339 -33.28582 -32.96945 -31.71775 -29.38667 -28.75495 -27.72951 -26.69645 -25.30376 -23.61617 -22.20456 -21.47606 -20.95865 -19.97713 -19.83759 -19.35083 -17.85545 -17.31924 -17.03079 -16.93616 -16.54892 -16.50254 -16.25715 -15.75879 -15.63209 -15.19695 -14.97466 -14.92291 -14.62372 -14.56414 -14.07496 -13.74078 -13.47255 -13.41522 -13.17916 -13.02145 -12.91978 -12.83389 -12.77241 -12.72071 -12.50631 -12.38189 -12.33364 -12.11032 -11.89409 -11.66263 -11.44080 -11.29367 -10.32484 -10.25814 -9.98133 -9.83729 -9.35768 -9.18608 -8.44922 -5.93442 -0.53377 0.46964 0.90565 1.32050 1.38958 1.42608 1.55341 1.98041 2.07740 2.08978 2.30196 2.81397 3.22169 3.44495 3.69115 3.95097 4.02281 4.06576 4.12875 4.18930 4.32432 4.38257 4.41249 4.49303 4.55983 4.61452 4.62417 4.68469 4.75066 4.78623 4.85093 4.89482 5.05111 5.07058 5.17434 5.24366 5.33804 5.38928 5.42837 5.46271 5.90017 6.08907 6.23869 6.33769 6.62838 7.00734 7.15011 7.58871 8.14759 8.72507 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035872 B = 0.001463 C = 0.001425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.371264 B =19135.741014 C =19650.895462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.130 4.130 3 C -0.227 4.227 4 S 0.239 5.761 5 C -0.299 4.299 6 C 0.587 3.413 7 O -0.574 6.574 8 N -0.715 5.715 9 C 0.127 3.873 10 C -0.115 4.115 11 C 0.058 3.942 12 N -0.537 5.537 13 C 0.024 3.976 14 C 0.057 3.943 15 C 0.441 3.559 16 O -0.614 6.614 17 N -0.575 5.575 18 C -0.332 4.332 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.992 3.008 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.273 1.273 26 C -0.059 4.059 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.196 0.804 31 H 0.410 0.590 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.085 0.915 38 H 0.028 0.972 39 H 0.053 0.947 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.395 0.605 44 H 0.277 0.723 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.764 9.157 4.012 32.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.143 4.143 3 C -0.365 4.365 4 S 0.508 5.492 5 C -0.419 4.419 6 C 0.375 3.625 7 O -0.456 6.456 8 N -0.366 5.366 9 C 0.003 3.997 10 C -0.154 4.154 11 C -0.070 4.070 12 N -0.262 5.262 13 C -0.123 4.123 14 C -0.074 4.074 15 C 0.229 3.771 16 O -0.500 6.500 17 N -0.213 5.213 18 C -0.462 4.462 19 H 0.097 0.903 20 C -0.213 4.213 21 N -0.563 5.563 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.093 4.093 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.213 0.787 31 H 0.246 0.754 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.127 0.873 43 H 0.229 0.771 44 H 0.086 0.914 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -29.410 10.248 3.617 31.353 hybrid contribution -0.161 -1.415 0.449 1.493 sum -29.571 8.833 4.066 31.128 Atomic orbital electron populations 1.20575 0.87693 1.03775 1.03210 1.18987 0.99278 0.90951 1.05068 1.25579 0.98283 1.04501 1.08122 1.82886 1.04330 0.95280 1.66736 1.24546 0.97782 0.98711 1.20833 1.17248 0.82365 0.87301 0.75628 1.90809 1.82404 1.20058 1.52297 1.45799 1.04932 1.11203 1.74706 1.21295 0.85828 0.89977 1.02566 1.21646 0.91124 0.98526 1.04064 1.22074 0.86817 0.95947 1.02125 1.61502 1.01402 1.26840 1.36431 1.22469 1.02954 0.98349 0.88574 1.21741 0.89345 0.93446 1.02901 1.20791 0.86141 0.87930 0.82287 1.90458 1.86578 1.15676 1.57269 1.41944 1.07062 1.09260 1.63021 1.19666 0.86117 0.93071 1.47345 0.90270 1.26023 1.02547 0.96147 0.96539 1.69681 1.31451 1.05543 1.49576 0.84934 0.77073 0.77930 0.78440 1.19665 1.19634 1.19764 1.20846 0.91183 1.00624 0.96660 0.90387 0.89994 0.91142 0.78669 0.75411 0.91314 0.91377 0.90350 0.90274 0.93496 0.89688 0.95402 0.92779 0.89774 0.91575 0.87273 0.77080 0.91373 0.83678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 10.13 71.23 0.72 0.05 16 2 C -0.13 -1.58 5.78 -21.05 -0.12 -1.70 16 3 C -0.23 -2.19 10.67 66.81 0.71 -1.47 16 4 S 0.24 2.66 22.16 -56.49 -1.25 1.41 16 5 C -0.30 -5.41 6.45 24.08 0.16 -5.26 16 6 C 0.59 13.34 7.78 86.42 0.67 14.01 16 7 O -0.57 -17.45 16.84 -4.36 -0.07 -17.52 16 8 N -0.72 -12.74 5.55 -467.15 -2.59 -15.34 16 9 C 0.13 2.30 5.67 86.38 0.49 2.79 16 10 C -0.12 -2.07 5.25 30.59 0.16 -1.91 16 11 C 0.06 1.27 4.96 86.30 0.43 1.70 16 12 N -0.54 -16.62 4.50 -927.08 -4.17 -20.79 16 13 C 0.02 0.74 8.96 127.69 1.14 1.89 16 14 C 0.06 1.95 5.45 85.56 0.47 2.42 16 15 C 0.44 20.94 7.47 87.66 0.66 21.59 16 16 O -0.61 -33.58 13.91 -3.08 -0.04 -33.62 16 17 N -0.58 -29.57 5.29 -306.99 -1.62 -31.20 16 18 C -0.33 -18.90 9.68 84.04 0.81 -18.08 16 19 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 20 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 21 N -0.92 -49.87 13.05 21.66 0.28 -49.59 16 22 Si 0.99 42.97 29.55 68.60 2.03 45.00 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 C -0.06 -1.00 9.80 21.72 0.21 -0.78 16 27 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.08 0.36 8.12 -2.38 -0.02 0.34 16 29 H 0.07 0.50 8.13 -2.39 -0.02 0.48 16 30 H 0.20 0.76 8.06 -2.91 -0.02 0.74 16 31 H 0.41 5.42 7.59 -92.71 -0.70 4.72 16 32 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.08 1.32 6.55 -2.39 -0.02 1.30 16 36 H 0.05 0.93 8.12 -2.39 -0.02 0.91 16 37 H 0.08 1.74 7.93 -2.39 -0.02 1.72 16 38 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.05 2.12 5.82 -2.39 -0.01 2.11 16 40 H 0.08 2.11 6.47 -2.39 -0.02 2.10 16 41 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 42 H 0.11 3.30 7.93 -2.39 -0.02 3.28 16 43 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 44 H 0.28 14.04 8.31 -92.70 -0.77 13.27 16 45 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -73.89 390.70 -0.88 -74.77 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -0.41 Total: 31.87 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 6.98 Total: 15.00 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -8.11 Total: -116.92 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -0.12 Total: -51.14 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.25 Total: 1.41 kcal Total: -73.89 -0.88 -74.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712946004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.591 kcal (2) G-P(sol) polarization free energy of solvation -73.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds