Wall clock time and date at job start Tue Mar 31 2020 22:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.41378 * 126.80690 * 2 1 4 4 C 1.35447 * 103.98719 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.77689 * 179.97438 * 4 3 2 6 6 N 1.46891 * 109.47596 * 89.99753 * 5 4 3 7 7 C 1.46900 * 111.00388 * 184.30034 * 6 5 4 8 8 H 1.08995 * 109.47573 * 184.18415 * 7 6 5 9 9 C 1.53004 * 109.47246 * 64.18196 * 7 6 5 10 10 N 1.46505 * 109.46715 * 55.00479 * 9 7 6 11 11 C 1.34775 * 119.99667 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00450 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99927 * 179.97438 * 11 10 9 14 14 S 1.80999 * 109.47319 * 179.97438 * 13 11 10 15 15 C 1.76200 * 100.00324 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99449 * 0.02562 * 15 14 13 17 17 C 1.38793 * 120.00123 * 180.02562 * 15 14 13 18 18 N 1.31628 * 120.00216 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99807 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47264 * 60.00017 * 19 17 15 21 21 H 1.48500 * 109.46956 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47363 * 299.99726 * 19 17 15 23 23 C 1.53001 * 109.46977 * 304.18761 * 7 6 5 24 24 C 1.52996 * 117.49710 * 225.81190 * 23 7 6 25 25 C 1.53002 * 117.49574 * 294.47068 * 23 7 6 26 26 O 1.34043 * 106.44570 * 0.23638 * 4 3 2 27 27 N 1.20924 * 111.56723 * 359.56783 * 26 4 3 28 28 H 1.08994 * 109.47565 * 89.99810 * 1 2 3 29 29 H 1.09003 * 109.47509 * 210.00614 * 1 2 3 30 30 H 1.09000 * 109.47046 * 329.99754 * 1 2 3 31 31 H 1.08000 * 128.00112 * 0.03730 * 3 2 1 32 32 H 1.09001 * 109.46752 * 329.99343 * 5 4 3 33 33 H 1.09003 * 109.47072 * 209.99552 * 5 4 3 34 34 H 1.00911 * 111.00163 * 308.24840 * 6 5 4 35 35 H 1.09000 * 109.47435 * 174.99865 * 9 7 6 36 36 H 1.08994 * 109.47432 * 295.00827 * 9 7 6 37 37 H 0.96998 * 119.99972 * 359.97438 * 10 9 7 38 38 H 1.09002 * 109.47431 * 300.00355 * 13 11 10 39 39 H 1.09004 * 109.47090 * 60.00000 * 13 11 10 40 40 H 0.96997 * 120.00425 * 180.02562 * 18 17 15 41 41 H 1.08998 * 115.55137 * 80.14086 * 23 7 6 42 42 H 1.09000 * 117.50050 * 215.00248 * 24 23 7 43 43 H 1.09001 * 117.50216 * 0.02562 * 24 23 7 44 44 H 1.09002 * 117.49969 * 359.97021 * 25 23 7 45 45 H 1.08997 * 117.49668 * 144.97779 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6024 0.6066 -0.0006 5 6 4.9022 1.3693 -0.0014 6 7 5.3253 1.6174 1.3832 7 6 6.5367 2.4474 1.4229 8 1 6.8705 2.5541 2.4550 9 6 6.2278 3.8286 0.8415 10 7 5.0929 4.4170 1.5572 11 6 4.6404 5.6392 1.2140 12 8 5.1729 6.2523 0.3131 13 6 3.4726 6.2442 1.9497 14 16 3.1073 7.8782 1.2621 15 6 1.7426 8.3392 2.2769 16 1 1.3886 7.6664 3.0440 17 6 1.1226 9.5669 2.0905 18 7 1.5544 10.3871 1.1560 19 14 -0.3236 10.0558 3.1669 20 1 0.1041 10.0822 4.5888 21 1 -0.8028 11.4041 2.7697 22 1 -1.4216 9.0703 2.9985 23 6 7.6386 1.7812 0.5967 24 6 9.0367 1.7064 1.2136 25 6 8.1832 0.4412 1.0955 26 8 3.4536 -0.7255 -0.0062 27 7 2.2867 -1.0424 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 2.0710 2.1742 0.0006 32 1 4.7648 2.3206 -0.5154 33 1 5.6657 0.7855 -0.5155 34 1 4.5809 2.0384 1.9189 35 1 7.1002 4.4727 0.9519 36 1 5.9797 3.7308 -0.2153 37 1 4.6668 3.9266 2.2774 38 1 2.6003 5.5999 1.8394 39 1 3.7204 6.3424 3.0067 40 1 1.1214 11.2453 1.0259 41 1 7.5714 1.9273 -0.4814 42 1 9.8893 1.8033 0.5414 43 1 9.1714 2.1315 2.2082 44 1 7.7568 0.0345 2.0125 45 1 8.4739 -0.2944 0.3455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713106300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:21 Heat of formation + Delta-G solvation = 49.097884 kcal Electronic energy + Delta-G solvation = -26518.841084 eV Core-core repulsion = 22666.813213 eV Total energy + Delta-G solvation = -3852.027871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.09320 -39.89445 -38.53597 -36.01595 -34.95534 -34.23661 -32.47803 -32.13159 -29.99254 -28.88451 -28.16571 -26.00324 -25.51233 -23.47406 -23.18287 -22.56919 -20.91762 -20.33451 -19.82932 -17.99178 -17.82665 -17.65806 -16.60844 -16.36738 -16.18076 -15.61831 -15.48315 -14.84840 -14.76116 -14.47720 -14.28437 -14.08931 -13.82207 -13.58675 -13.52399 -13.24756 -13.15228 -12.80128 -12.66663 -12.44213 -12.21371 -11.79756 -11.75916 -11.40322 -11.30696 -11.09748 -11.07657 -10.82265 -10.62034 -10.59292 -10.19472 -9.88231 -9.68960 -9.52629 -9.12344 -9.05672 -8.90429 -8.30621 -6.56145 -6.26316 -3.97717 1.20816 2.01073 2.82591 2.90209 2.97628 3.19976 3.22578 3.25801 3.38964 3.61675 3.92688 3.99305 4.15772 4.20296 4.25007 4.47723 4.67671 4.75933 4.83009 4.85005 4.90680 4.98916 5.03903 5.08929 5.12921 5.22034 5.23882 5.27595 5.40414 5.47670 5.52130 5.56439 5.60051 5.65838 5.72912 5.79244 5.84347 5.90417 5.92637 6.04790 6.33157 6.47683 6.80512 7.51070 7.54747 8.08435 8.30049 8.47797 9.18960 10.81017 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009272 B = 0.002866 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.075088 B = 9768.037417 C =12315.107959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.016 3.984 3 C -0.224 4.224 4 C -0.023 4.023 5 C 0.132 3.868 6 N -0.670 5.670 7 C 0.110 3.890 8 H 0.097 0.903 9 C 0.086 3.914 10 N -0.742 5.742 11 C 0.533 3.467 12 O -0.513 6.513 13 C -0.154 4.154 14 S -0.058 6.058 15 C -0.537 4.537 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.274 1.274 23 C -0.153 4.153 24 C -0.175 4.175 25 C -0.158 4.158 26 O 0.107 5.893 27 N -0.368 5.368 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.172 0.828 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.345 0.655 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.394 0.606 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.269 0.731 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.158 -22.236 -0.002 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.143 4.143 3 C -0.247 4.247 4 C -0.087 4.087 5 C 0.003 3.997 6 N -0.302 5.302 7 C 0.001 3.999 8 H 0.115 0.885 9 C -0.040 4.040 10 N -0.398 5.398 11 C 0.319 3.681 12 O -0.387 6.387 13 C -0.305 4.305 14 S 0.168 5.832 15 C -0.686 4.686 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.172 4.172 24 C -0.213 4.213 25 C -0.195 4.195 26 O 0.040 5.960 27 N -0.072 5.072 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.190 0.810 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.164 0.836 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.228 0.772 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.124 0.876 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.119 0.881 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.141 -22.945 -1.557 24.747 hybrid contribution -2.255 1.192 1.811 3.128 sum 6.886 -21.752 0.255 22.818 Atomic orbital electron populations 1.20185 0.85901 1.03914 1.03467 1.23611 0.99125 0.88760 1.02760 1.22564 0.91301 1.01444 1.09348 1.24289 0.97715 0.83870 1.02867 1.20420 0.90053 0.97429 0.91779 1.60753 1.07591 1.50645 1.11234 1.21439 0.89683 0.88666 1.00159 0.88500 1.21975 0.90332 0.94686 0.96972 1.46025 1.35112 1.19456 1.39218 1.20325 0.84235 0.80143 0.83422 1.90718 1.57914 1.60279 1.29760 1.23537 0.97894 1.05657 1.03383 1.85414 1.41679 1.08658 1.47436 1.22818 1.17967 1.05943 1.21837 0.90972 1.24986 0.97577 0.95294 0.95646 1.69999 1.40245 1.09278 1.30727 0.86229 0.81299 0.77813 0.80198 1.19909 1.20779 1.19916 1.22112 0.94137 1.01774 0.99186 1.23021 0.93504 1.02359 1.02417 1.22850 1.02681 0.90476 1.03523 1.84819 1.21429 1.22701 1.67082 1.73854 0.89405 1.24180 1.19781 0.90133 0.90622 0.89759 0.81032 0.90854 0.88083 0.83556 0.90608 0.91280 0.77162 0.89301 0.89189 0.92073 0.87566 0.88652 0.88627 0.88146 0.88932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.47 36.00 0.38 -0.24 16 2 C 0.02 0.17 7.33 -82.10 -0.60 -0.43 16 3 C -0.22 -2.25 11.06 -39.38 -0.44 -2.68 16 4 C -0.02 -0.23 6.96 -35.31 -0.25 -0.47 16 5 C 0.13 1.02 5.59 -4.98 -0.03 1.00 16 6 N -0.67 -4.84 6.42 -108.00 -0.69 -5.53 16 7 C 0.11 0.77 2.90 -67.71 -0.20 0.58 16 8 H 0.10 0.66 7.95 -51.93 -0.41 0.25 16 9 C 0.09 0.84 4.79 -4.04 -0.02 0.82 16 10 N -0.74 -8.44 5.31 -60.29 -0.32 -8.76 16 11 C 0.53 9.13 7.85 -10.99 -0.09 9.04 16 12 O -0.51 -11.01 15.86 5.55 0.09 -10.92 16 13 C -0.15 -2.92 6.16 36.01 0.22 -2.70 16 14 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 15 C -0.54 -14.94 9.50 30.94 0.29 -14.65 16 16 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 17 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -25.73 13.22 55.49 0.73 -25.00 16 19 Si 0.92 21.00 29.55 -169.99 -5.02 15.97 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 C -0.15 -1.00 3.78 -90.62 -0.34 -1.34 16 24 C -0.18 -1.08 10.18 -26.69 -0.27 -1.35 16 25 C -0.16 -0.99 10.22 -26.69 -0.27 -1.26 16 26 O 0.11 1.24 11.20 17.17 0.19 1.43 16 27 N -0.37 -4.59 12.07 33.42 0.40 -4.19 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.17 1.54 8.06 -52.49 -0.42 1.11 16 32 H 0.07 0.60 6.32 -51.93 -0.33 0.27 16 33 H 0.10 0.71 7.00 -51.93 -0.36 0.35 16 34 H 0.34 2.45 7.08 -39.29 -0.28 2.18 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.73 6.66 -51.93 -0.35 0.39 16 37 H 0.39 3.42 7.12 -40.82 -0.29 3.13 16 38 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 39 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.11 0.69 7.88 -51.93 -0.41 0.28 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 44 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 393.33 15.07 5.93 5.93 Total: -1.00 -34.32 393.33 -9.23 -43.55 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.62 Total: 2.96 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -1.70 Total: -11.70 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.12 Total: -43.47 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.28 Total: -9.49 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.32 -9.23 -43.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713106300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.648 kcal (2) G-P(sol) polarization free energy of solvation -34.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds