Wall clock time and date at job start Tue Mar 31 2020 22:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.41378 * 126.80690 * 2 1 4 4 C 1.35447 * 103.98719 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.77689 * 179.97438 * 4 3 2 6 6 N 1.46891 * 109.47596 * 89.99753 * 5 4 3 7 7 C 1.46900 * 111.00388 * 184.30034 * 6 5 4 8 8 H 1.08995 * 109.47573 * 184.18415 * 7 6 5 9 9 C 1.53004 * 109.47246 * 64.18196 * 7 6 5 10 10 N 1.46505 * 109.46715 * 55.00479 * 9 7 6 11 11 C 1.34775 * 119.99667 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00450 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99927 * 179.97438 * 11 10 9 14 14 S 1.80999 * 109.47319 * 179.97438 * 13 11 10 15 15 C 1.76200 * 100.00324 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99449 * 0.02562 * 15 14 13 17 17 C 1.38793 * 120.00123 * 180.02562 * 15 14 13 18 18 N 1.31628 * 120.00216 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99807 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47264 * 60.00017 * 19 17 15 21 21 H 1.48500 * 109.46956 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47363 * 299.99726 * 19 17 15 23 23 C 1.53001 * 109.46977 * 304.18761 * 7 6 5 24 24 C 1.52996 * 117.49710 * 225.81190 * 23 7 6 25 25 C 1.53002 * 117.49574 * 294.47068 * 23 7 6 26 26 O 1.34043 * 106.44570 * 0.23638 * 4 3 2 27 27 N 1.20924 * 111.56723 * 359.56783 * 26 4 3 28 28 H 1.08994 * 109.47565 * 89.99810 * 1 2 3 29 29 H 1.09003 * 109.47509 * 210.00614 * 1 2 3 30 30 H 1.09000 * 109.47046 * 329.99754 * 1 2 3 31 31 H 1.08000 * 128.00112 * 0.03730 * 3 2 1 32 32 H 1.09001 * 109.46752 * 329.99343 * 5 4 3 33 33 H 1.09003 * 109.47072 * 209.99552 * 5 4 3 34 34 H 1.00911 * 111.00163 * 308.24840 * 6 5 4 35 35 H 1.09000 * 109.47435 * 174.99865 * 9 7 6 36 36 H 1.08994 * 109.47432 * 295.00827 * 9 7 6 37 37 H 0.96998 * 119.99972 * 359.97438 * 10 9 7 38 38 H 1.09002 * 109.47431 * 300.00355 * 13 11 10 39 39 H 1.09004 * 109.47090 * 60.00000 * 13 11 10 40 40 H 0.96997 * 120.00425 * 180.02562 * 18 17 15 41 41 H 1.08998 * 115.55137 * 80.14086 * 23 7 6 42 42 H 1.09000 * 117.50050 * 215.00248 * 24 23 7 43 43 H 1.09001 * 117.50216 * 0.02562 * 24 23 7 44 44 H 1.09002 * 117.49969 * 359.97021 * 25 23 7 45 45 H 1.08997 * 117.49668 * 144.97779 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6024 0.6066 -0.0006 5 6 4.9022 1.3693 -0.0014 6 7 5.3253 1.6174 1.3832 7 6 6.5367 2.4474 1.4229 8 1 6.8705 2.5541 2.4550 9 6 6.2278 3.8286 0.8415 10 7 5.0929 4.4170 1.5572 11 6 4.6404 5.6392 1.2140 12 8 5.1729 6.2523 0.3131 13 6 3.4726 6.2442 1.9497 14 16 3.1073 7.8782 1.2621 15 6 1.7426 8.3392 2.2769 16 1 1.3886 7.6664 3.0440 17 6 1.1226 9.5669 2.0905 18 7 1.5544 10.3871 1.1560 19 14 -0.3236 10.0558 3.1669 20 1 0.1041 10.0822 4.5888 21 1 -0.8028 11.4041 2.7697 22 1 -1.4216 9.0703 2.9985 23 6 7.6386 1.7812 0.5967 24 6 9.0367 1.7064 1.2136 25 6 8.1832 0.4412 1.0955 26 8 3.4536 -0.7255 -0.0062 27 7 2.2867 -1.0424 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 2.0710 2.1742 0.0006 32 1 4.7648 2.3206 -0.5154 33 1 5.6657 0.7855 -0.5155 34 1 4.5809 2.0384 1.9189 35 1 7.1002 4.4727 0.9519 36 1 5.9797 3.7308 -0.2153 37 1 4.6668 3.9266 2.2774 38 1 2.6003 5.5999 1.8394 39 1 3.7204 6.3424 3.0067 40 1 1.1214 11.2453 1.0259 41 1 7.5714 1.9273 -0.4814 42 1 9.8893 1.8033 0.5414 43 1 9.1714 2.1315 2.2082 44 1 7.7568 0.0345 2.0125 45 1 8.4739 -0.2944 0.3455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713106300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:20 Heat of formation + Delta-G solvation = 25.266007 kcal Electronic energy + Delta-G solvation = -26519.874512 eV Core-core repulsion = 22666.813213 eV Total energy + Delta-G solvation = -3853.061298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.91491 -40.93550 -39.48615 -36.67536 -35.74675 -35.26205 -34.57820 -33.00022 -31.24564 -29.58864 -29.13946 -27.65847 -26.70344 -24.25852 -23.97375 -23.05774 -21.87691 -21.34259 -20.49814 -19.83500 -18.65717 -18.44091 -17.92194 -17.35770 -17.14178 -16.87209 -16.50789 -16.32651 -15.88372 -15.62662 -15.19321 -15.06173 -14.72224 -14.56996 -14.31163 -14.23967 -14.19191 -13.99030 -13.69238 -13.29117 -13.16532 -13.12679 -12.87007 -12.74766 -12.62589 -12.25121 -12.10006 -11.98521 -11.74807 -11.19701 -11.12492 -11.12097 -10.96662 -10.90905 -10.47952 -10.26889 -10.17995 -9.56084 -8.65735 -8.34188 -6.11935 0.42158 1.22010 1.27087 1.43960 1.47136 1.56312 1.59938 2.08942 2.20494 2.28441 2.86096 3.00165 3.26174 3.28827 3.33122 3.53310 3.59687 3.82331 3.98392 4.05969 4.11759 4.19509 4.24488 4.26173 4.31336 4.36029 4.50760 4.51593 4.54512 4.57859 4.65589 4.76538 4.86578 4.92158 4.94734 4.95935 5.17666 5.22291 5.31282 5.37118 5.42288 5.42886 5.76003 6.19173 6.20042 6.42294 7.07458 7.20844 7.28274 8.74585 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009272 B = 0.002866 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.075088 B = 9768.037417 C =12315.107959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.009 3.991 3 C -0.233 4.233 4 C -0.018 4.018 5 C 0.138 3.862 6 N -0.667 5.667 7 C 0.126 3.874 8 H 0.108 0.892 9 C 0.088 3.912 10 N -0.713 5.713 11 C 0.537 3.463 12 O -0.562 6.562 13 C -0.131 4.131 14 S -0.150 6.150 15 C -0.547 4.547 16 H 0.083 0.917 17 C 0.015 3.985 18 N -0.911 5.911 19 Si 0.996 3.004 20 H -0.263 1.263 21 H -0.280 1.280 22 H -0.261 1.261 23 C -0.159 4.159 24 C -0.174 4.174 25 C -0.154 4.154 26 O 0.093 5.907 27 N -0.396 5.396 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.182 0.818 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.347 0.653 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.412 0.588 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.271 0.729 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.735 -23.635 1.589 24.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.149 4.149 3 C -0.256 4.256 4 C -0.082 4.082 5 C 0.008 3.992 6 N -0.299 5.299 7 C 0.016 3.984 8 H 0.126 0.874 9 C -0.038 4.038 10 N -0.368 5.368 11 C 0.322 3.678 12 O -0.440 6.440 13 C -0.282 4.282 14 S 0.078 5.922 15 C -0.694 4.694 16 H 0.101 0.899 17 C -0.190 4.190 18 N -0.548 5.548 19 Si 0.817 3.183 20 H -0.187 1.187 21 H -0.206 1.206 22 H -0.186 1.186 23 C -0.178 4.178 24 C -0.212 4.212 25 C -0.192 4.192 26 O 0.029 5.971 27 N -0.104 5.104 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.200 0.800 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.167 0.833 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.249 0.751 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.080 0.920 41 H 0.126 0.874 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.738 -24.406 0.069 25.923 hybrid contribution -2.034 1.509 1.309 2.851 sum 6.704 -22.897 1.378 23.898 Atomic orbital electron populations 1.20306 0.84255 1.04681 1.04297 1.24117 1.00380 0.88680 1.01738 1.22759 0.91342 1.01783 1.09672 1.24606 0.98424 0.83355 1.01810 1.20437 0.89472 0.97152 0.92101 1.60759 1.07727 1.50522 1.10884 1.21349 0.89739 0.86739 1.00571 0.87432 1.22109 0.88994 0.95898 0.96763 1.45701 1.34778 1.17434 1.38925 1.20016 0.83649 0.81385 0.82709 1.90711 1.59342 1.62004 1.31944 1.23379 0.99734 1.01224 1.03858 1.85589 1.42340 1.14860 1.49453 1.23173 1.17965 1.06441 1.21867 0.89874 1.26092 1.00701 0.95225 0.97016 1.70168 1.42013 1.09802 1.32784 0.85044 0.77397 0.77533 0.78294 1.18721 1.20560 1.18577 1.22104 0.94272 1.02191 0.99242 1.23086 0.93348 1.02103 1.02633 1.22846 1.02454 0.90427 1.03435 1.84783 1.21308 1.23548 1.67505 1.73851 0.89868 1.25199 1.21434 0.89210 0.90312 0.88519 0.80044 0.91012 0.87186 0.83286 0.91504 0.91800 0.75094 0.87040 0.87332 0.92024 0.87432 0.88207 0.88311 0.88475 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.47 71.23 0.75 -0.40 16 2 C 0.01 0.19 7.33 43.58 0.32 0.51 16 3 C -0.23 -4.37 11.06 22.40 0.25 -4.12 16 4 C -0.02 -0.32 6.96 25.04 0.17 -0.15 16 5 C 0.14 1.88 5.59 85.56 0.48 2.36 16 6 N -0.67 -8.04 6.42 -495.60 -3.18 -11.22 16 7 C 0.13 1.47 2.90 44.92 0.13 1.60 16 8 H 0.11 1.13 7.95 -2.39 -0.02 1.11 16 9 C 0.09 1.56 4.79 86.38 0.41 1.98 16 10 N -0.71 -14.69 5.31 -463.05 -2.46 -17.15 16 11 C 0.54 17.81 7.85 87.66 0.69 18.50 16 12 O -0.56 -24.32 15.86 -3.05 -0.05 -24.37 16 13 C -0.13 -4.77 6.16 71.24 0.44 -4.34 16 14 S -0.15 -7.99 20.57 -56.49 -1.16 -9.15 16 15 C -0.55 -30.29 9.50 67.95 0.65 -29.65 16 16 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 17 C 0.01 0.81 5.49 84.86 0.47 1.28 16 18 N -0.91 -55.05 13.22 21.65 0.29 -54.76 16 19 Si 1.00 42.57 29.55 68.60 2.03 44.59 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 21 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 23 C -0.16 -1.75 3.78 -10.79 -0.04 -1.79 16 24 C -0.17 -1.78 10.18 30.62 0.31 -1.47 16 25 C -0.15 -1.61 10.22 30.62 0.31 -1.30 16 26 O 0.09 2.09 11.20 71.60 0.80 2.90 16 27 N -0.40 -9.69 12.07 -49.56 -0.60 -10.29 16 28 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.18 2.94 8.06 -2.91 -0.02 2.91 16 32 H 0.07 1.05 6.32 -2.39 -0.02 1.03 16 33 H 0.11 1.34 7.00 -2.39 -0.02 1.33 16 34 H 0.35 3.96 7.08 -89.68 -0.63 3.33 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.27 6.66 -2.39 -0.02 1.25 16 37 H 0.41 5.84 7.12 -92.71 -0.66 5.18 16 38 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 39 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 40 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.11 1.19 7.88 -2.39 -0.02 1.17 16 42 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.10 0.96 8.08 -2.39 -0.02 0.94 16 44 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -76.32 393.33 0.73 -75.59 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -0.27 Total: 20.85 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 5.33 Total: -16.99 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -5.95 Total: -93.42 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: 0.75 Total: -21.47 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.15 kcal Total: -76.32 0.73 -75.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713106300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.857 kcal (2) G-P(sol) polarization free energy of solvation -76.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds