Wall clock time and date at job start Tue Mar 31 2020 22:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34044 * 126.77697 * 2 1 4 4 N 1.20922 * 111.56894 * 180.28642 * 3 2 1 5 5 C 1.30182 * 111.60328 * 359.75788 * 4 3 2 6 6 C 1.35449 * 126.77886 * 179.87976 * 2 1 3 7 7 C 1.50703 * 128.00557 * 0.02562 * 6 2 1 8 8 N 1.46904 * 109.47157 * 79.69735 * 7 6 2 9 9 C 1.48532 * 110.99855 * 56.00584 * 8 7 6 10 10 C 1.54934 * 103.22721 * 159.71760 * 9 8 7 11 11 C 1.54592 * 102.92340 * 322.58928 * 10 9 8 12 12 C 1.47899 * 110.99801 * 173.40210 * 8 7 6 13 13 H 1.09001 * 110.08453 * 333.60061 * 12 8 7 14 14 C 1.53000 * 109.91635 * 94.80245 * 12 8 7 15 15 N 1.46498 * 109.47110 * 296.94833 * 14 12 8 16 16 C 1.34777 * 119.99719 * 173.78279 * 15 14 12 17 17 O 1.21280 * 120.00023 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99948 * 179.97438 * 16 15 14 19 19 S 1.81006 * 109.47079 * 179.97438 * 18 16 15 20 20 C 1.76197 * 99.99756 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00088 * 0.02562 * 20 19 18 22 22 C 1.38802 * 119.99635 * 180.02562 * 20 19 18 23 23 N 1.31639 * 119.99742 * 180.02562 * 22 20 19 24 24 Si 1.86790 * 120.00358 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47244 * 90.00010 * 24 22 20 26 26 H 1.48501 * 109.47496 * 209.99929 * 24 22 20 27 27 H 1.48507 * 109.47226 * 330.00311 * 24 22 20 28 28 H 1.08999 * 109.47358 * 270.11617 * 1 2 3 29 29 H 1.08997 * 109.46873 * 30.11897 * 1 2 3 30 30 H 1.08997 * 109.46982 * 150.11535 * 1 2 3 31 31 H 1.07999 * 126.80079 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.46935 * 319.69911 * 7 6 2 33 33 H 1.09008 * 109.47001 * 199.69868 * 7 6 2 34 34 H 1.09001 * 110.66844 * 41.28743 * 9 8 7 35 35 H 1.09000 * 110.81029 * 278.22576 * 9 8 7 36 36 H 1.08997 * 110.72813 * 204.22917 * 10 9 8 37 37 H 1.09000 * 110.87526 * 81.01238 * 10 9 8 38 38 H 1.09004 * 110.30843 * 263.03745 * 11 10 9 39 39 H 1.09003 * 110.31674 * 140.87053 * 11 10 9 40 40 H 1.09005 * 109.46985 * 176.94702 * 14 12 8 41 41 H 1.09002 * 109.46936 * 56.95385 * 14 12 8 42 42 H 0.96996 * 120.00475 * 353.78416 * 15 14 12 43 43 H 1.09005 * 109.46697 * 60.00396 * 18 16 15 44 44 H 1.08993 * 109.47215 * 299.99799 * 18 16 15 45 45 H 0.96992 * 119.99944 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0737 0.0000 4 7 3.4764 0.7565 -0.0056 5 6 3.6214 -0.5373 -0.0050 6 6 2.3180 -1.0849 0.0023 7 6 1.9224 -2.5391 0.0048 8 7 1.5554 -2.9491 -1.3573 9 6 2.6613 -2.6779 -2.3110 10 6 2.3375 -3.6117 -3.5042 11 6 1.7872 -4.8795 -2.8115 12 6 1.3129 -4.4065 -1.4248 13 1 1.8785 -4.9166 -0.6451 14 6 -0.1804 -4.6947 -1.2583 15 7 -0.6176 -4.2551 0.0690 16 6 -1.9248 -4.2936 0.3949 17 8 -2.7392 -4.6918 -0.4108 18 6 -2.3745 -3.8420 1.7605 19 16 -4.1718 -4.0121 1.8907 20 6 -4.4157 -3.4308 3.5361 21 1 -3.5702 -3.1087 4.1259 22 6 -5.6944 -3.3870 4.0742 23 7 -5.8766 -2.9523 5.3033 24 14 -7.1567 -3.9435 3.0539 25 1 -7.3854 -5.3953 3.2672 26 1 -8.3654 -3.1862 3.4669 27 1 -6.8819 -3.6917 1.6164 28 1 -0.3634 0.0021 1.0276 29 1 -0.3633 0.8889 -0.5157 30 1 -0.3633 -0.8910 -0.5120 31 1 4.5528 -1.0839 -0.0087 32 1 1.0705 -2.6827 0.6695 33 1 2.7606 -3.1430 0.3526 34 1 3.6231 -2.9381 -1.8689 35 1 2.6539 -1.6344 -2.6260 36 1 3.2403 -3.8422 -4.0697 37 1 1.5816 -3.1670 -4.1514 38 1 2.5747 -5.6260 -2.7078 39 1 0.9504 -5.2876 -3.3786 40 1 -0.3578 -5.7651 -1.3633 41 1 -0.7416 -4.1568 -2.0224 42 1 0.0337 -3.9363 0.7132 43 1 -2.0971 -2.7981 1.9075 44 1 -1.8949 -4.4562 2.5225 45 1 -6.7701 -2.9221 5.6795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713502101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:33 Heat of formation + Delta-G solvation = 30.850369 kcal Electronic energy + Delta-G solvation = -27342.921026 eV Core-core repulsion = 23490.101884 eV Total energy + Delta-G solvation = -3852.819142 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.15709 -40.10636 -38.80423 -35.33404 -34.48215 -33.33567 -32.44362 -31.99246 -30.82401 -28.86920 -28.14183 -26.45895 -25.64321 -24.71853 -22.84990 -22.03751 -20.95034 -20.53383 -20.07651 -17.92061 -17.82144 -17.36530 -16.69227 -16.49249 -16.09476 -15.60223 -15.18574 -14.98347 -14.80920 -14.72935 -14.14728 -13.82769 -13.68333 -13.39645 -13.31525 -13.28196 -12.90556 -12.80293 -12.73246 -12.54663 -12.08794 -11.86899 -11.75354 -11.72852 -11.45386 -11.28013 -11.25719 -11.01332 -10.96136 -10.60053 -10.57382 -9.86204 -9.52407 -9.40691 -9.01791 -8.93870 -8.83349 -8.50268 -6.92196 -6.29570 -4.01231 1.23632 1.93131 2.76524 2.87095 2.99855 3.30377 3.34007 3.50217 3.54888 3.64824 3.97312 4.22707 4.26679 4.32519 4.33919 4.44012 4.62287 4.69307 4.75660 4.77783 4.90513 5.08629 5.09660 5.11456 5.18367 5.24198 5.32106 5.35041 5.35495 5.43932 5.46926 5.54631 5.59606 5.66228 5.70416 5.75430 5.77298 5.90254 5.91560 5.99271 6.40622 6.56009 6.58613 7.59618 7.93474 8.00969 8.40772 8.50718 9.16758 10.79682 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012626 B = 0.002986 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.089449 B = 9373.815035 C =11076.844518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.005 3.995 3 O 0.092 5.908 4 N -0.369 5.369 5 C -0.001 4.001 6 C -0.211 4.211 7 C 0.123 3.877 8 N -0.504 5.504 9 C 0.040 3.960 10 C -0.123 4.123 11 C -0.123 4.123 12 C 0.054 3.946 13 H 0.061 0.939 14 C 0.138 3.862 15 N -0.734 5.734 16 C 0.530 3.470 17 O -0.519 6.519 18 C -0.125 4.125 19 S -0.140 6.140 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.881 5.881 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.185 0.815 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.393 0.607 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.375 0.320 -15.152 26.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.060 4.060 3 O 0.029 5.971 4 N -0.073 5.073 5 C -0.181 4.181 6 C -0.215 4.215 7 C -0.005 4.005 8 N -0.229 5.229 9 C -0.087 4.087 10 C -0.161 4.161 11 C -0.161 4.161 12 C -0.055 4.055 13 H 0.079 0.921 14 C 0.013 3.987 15 N -0.390 5.390 16 C 0.316 3.684 17 O -0.393 6.393 18 C -0.275 4.275 19 S 0.086 5.914 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.121 0.879 31 H 0.202 0.798 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.229 0.771 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 20.264 1.031 -16.477 26.138 hybrid contribution 1.157 -0.759 1.504 2.044 sum 21.421 0.273 -14.974 26.137 Atomic orbital electron populations 1.20492 0.83331 1.05468 1.04649 1.24457 0.96416 0.85389 0.99695 1.84823 1.11419 1.33310 1.67565 1.73896 0.97363 1.16649 1.19396 1.24856 0.99434 0.90475 1.03311 1.20781 0.92050 0.96734 1.11958 1.20556 0.99943 0.88898 0.91086 1.64809 1.38396 1.14202 1.05453 1.23163 0.92398 1.00431 0.92726 1.22479 1.01216 0.95159 0.97277 1.22363 1.01332 0.97930 0.94490 1.22685 0.96284 0.88304 0.98232 0.92088 1.21365 0.92495 0.99419 0.85419 1.46110 1.08146 1.68610 1.16165 1.20243 0.81712 0.77430 0.89038 1.90702 1.52320 1.45162 1.51161 1.23283 1.03449 1.04663 0.96140 1.84807 0.99066 1.86478 1.21032 1.22318 0.97805 1.49830 0.96959 0.89432 1.24713 0.98419 0.93598 0.94563 1.69940 1.23223 1.44678 1.13887 0.86741 0.82314 0.79775 0.83060 1.19243 1.19963 1.15867 0.88950 0.89759 0.87886 0.79800 0.89208 0.93009 0.93747 0.90237 0.90998 0.90466 0.91002 0.90138 0.91519 0.90377 0.77084 0.88595 0.88718 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.30 36.00 0.37 -0.32 16 2 C 0.00 0.05 7.49 -35.30 -0.26 -0.22 16 3 O 0.09 1.05 11.20 17.17 0.19 1.24 16 4 N -0.37 -4.24 12.07 30.36 0.37 -3.88 16 5 C 0.00 -0.01 12.02 -17.06 -0.21 -0.22 16 6 C -0.21 -1.86 4.72 -104.42 -0.49 -2.35 16 7 C 0.12 0.92 4.90 -4.97 -0.02 0.90 16 8 N -0.50 -3.87 4.94 -223.99 -1.11 -4.98 16 9 C 0.04 0.28 5.56 -1.90 -0.01 0.27 16 10 C -0.12 -0.74 7.06 -24.87 -0.18 -0.91 16 11 C -0.12 -0.74 6.57 -25.37 -0.17 -0.90 16 12 C 0.05 0.39 2.70 -66.64 -0.18 0.21 16 13 H 0.06 0.40 7.64 -51.93 -0.40 0.01 16 14 C 0.14 1.39 5.12 -4.04 -0.02 1.37 16 15 N -0.73 -8.57 5.32 -60.29 -0.32 -8.89 16 16 C 0.53 8.87 7.85 -10.99 -0.09 8.78 16 17 O -0.52 -10.77 15.85 5.56 0.09 -10.68 16 18 C -0.12 -2.29 6.16 36.01 0.22 -2.07 16 19 S -0.14 -3.46 18.55 -107.50 -1.99 -5.45 16 20 C -0.52 -14.72 10.04 30.94 0.31 -14.41 16 21 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 22 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 23 N -0.88 -26.29 13.97 55.49 0.78 -25.52 16 24 Si 0.86 21.51 27.74 -169.99 -4.71 16.79 16 25 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.23 -5.87 6.74 56.52 0.38 -5.49 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.10 0.93 8.05 -51.93 -0.42 0.51 16 31 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.09 0.69 5.52 -51.93 -0.29 0.40 16 33 H 0.05 0.33 7.92 -51.92 -0.41 -0.08 16 34 H 0.04 0.28 8.02 -51.93 -0.42 -0.14 16 35 H 0.08 0.64 7.93 -51.93 -0.41 0.23 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.50 7.69 -51.93 -0.40 0.10 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 42 H 0.39 3.67 5.61 -40.82 -0.23 3.44 16 43 H 0.10 1.61 8.14 -51.91 -0.42 1.18 16 44 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 382.60 15.07 5.77 5.77 Total: -1.00 -34.04 382.60 -8.54 -42.58 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.77 Total: 0.22 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -0.82 Total: -7.21 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -0.29 Total: -43.26 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.28 Total: -9.44 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.79 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.99 Total: -5.45 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.04 -8.54 -42.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713502101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.428 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds