Wall clock time and date at job start Tue Mar 31 2020 22:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34044 * 126.77697 * 2 1 4 4 N 1.20922 * 111.56894 * 180.28642 * 3 2 1 5 5 C 1.30182 * 111.60328 * 359.75788 * 4 3 2 6 6 C 1.35449 * 126.77886 * 179.87976 * 2 1 3 7 7 C 1.50703 * 128.00557 * 0.02562 * 6 2 1 8 8 N 1.46904 * 109.47157 * 79.69735 * 7 6 2 9 9 C 1.48532 * 110.99855 * 56.00584 * 8 7 6 10 10 C 1.54934 * 103.22721 * 159.71760 * 9 8 7 11 11 C 1.54592 * 102.92340 * 322.58928 * 10 9 8 12 12 C 1.47899 * 110.99801 * 173.40210 * 8 7 6 13 13 H 1.09001 * 110.08453 * 333.60061 * 12 8 7 14 14 C 1.53000 * 109.91635 * 94.80245 * 12 8 7 15 15 N 1.46498 * 109.47110 * 296.94833 * 14 12 8 16 16 C 1.34777 * 119.99719 * 173.78279 * 15 14 12 17 17 O 1.21280 * 120.00023 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99948 * 179.97438 * 16 15 14 19 19 S 1.81006 * 109.47079 * 179.97438 * 18 16 15 20 20 C 1.76197 * 99.99756 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00088 * 0.02562 * 20 19 18 22 22 C 1.38802 * 119.99635 * 180.02562 * 20 19 18 23 23 N 1.31639 * 119.99742 * 180.02562 * 22 20 19 24 24 Si 1.86790 * 120.00358 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47244 * 90.00010 * 24 22 20 26 26 H 1.48501 * 109.47496 * 209.99929 * 24 22 20 27 27 H 1.48507 * 109.47226 * 330.00311 * 24 22 20 28 28 H 1.08999 * 109.47358 * 270.11617 * 1 2 3 29 29 H 1.08997 * 109.46873 * 30.11897 * 1 2 3 30 30 H 1.08997 * 109.46982 * 150.11535 * 1 2 3 31 31 H 1.07999 * 126.80079 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.46935 * 319.69911 * 7 6 2 33 33 H 1.09008 * 109.47001 * 199.69868 * 7 6 2 34 34 H 1.09001 * 110.66844 * 41.28743 * 9 8 7 35 35 H 1.09000 * 110.81029 * 278.22576 * 9 8 7 36 36 H 1.08997 * 110.72813 * 204.22917 * 10 9 8 37 37 H 1.09000 * 110.87526 * 81.01238 * 10 9 8 38 38 H 1.09004 * 110.30843 * 263.03745 * 11 10 9 39 39 H 1.09003 * 110.31674 * 140.87053 * 11 10 9 40 40 H 1.09005 * 109.46985 * 176.94702 * 14 12 8 41 41 H 1.09002 * 109.46936 * 56.95385 * 14 12 8 42 42 H 0.96996 * 120.00475 * 353.78416 * 15 14 12 43 43 H 1.09005 * 109.46697 * 60.00396 * 18 16 15 44 44 H 1.08993 * 109.47215 * 299.99799 * 18 16 15 45 45 H 0.96992 * 119.99944 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0737 0.0000 4 7 3.4764 0.7565 -0.0056 5 6 3.6214 -0.5373 -0.0050 6 6 2.3180 -1.0849 0.0023 7 6 1.9224 -2.5391 0.0048 8 7 1.5554 -2.9491 -1.3573 9 6 2.6613 -2.6779 -2.3110 10 6 2.3375 -3.6117 -3.5042 11 6 1.7872 -4.8795 -2.8115 12 6 1.3129 -4.4065 -1.4248 13 1 1.8785 -4.9166 -0.6451 14 6 -0.1804 -4.6947 -1.2583 15 7 -0.6176 -4.2551 0.0690 16 6 -1.9248 -4.2936 0.3949 17 8 -2.7392 -4.6918 -0.4108 18 6 -2.3745 -3.8420 1.7605 19 16 -4.1718 -4.0121 1.8907 20 6 -4.4157 -3.4308 3.5361 21 1 -3.5702 -3.1087 4.1259 22 6 -5.6944 -3.3870 4.0742 23 7 -5.8766 -2.9523 5.3033 24 14 -7.1567 -3.9435 3.0539 25 1 -7.3854 -5.3953 3.2672 26 1 -8.3654 -3.1862 3.4669 27 1 -6.8819 -3.6917 1.6164 28 1 -0.3634 0.0021 1.0276 29 1 -0.3633 0.8889 -0.5157 30 1 -0.3633 -0.8910 -0.5120 31 1 4.5528 -1.0839 -0.0087 32 1 1.0705 -2.6827 0.6695 33 1 2.7606 -3.1430 0.3526 34 1 3.6231 -2.9381 -1.8689 35 1 2.6539 -1.6344 -2.6260 36 1 3.2403 -3.8422 -4.0697 37 1 1.5816 -3.1670 -4.1514 38 1 2.5747 -5.6260 -2.7078 39 1 0.9504 -5.2876 -3.3786 40 1 -0.3578 -5.7651 -1.3633 41 1 -0.7416 -4.1568 -2.0224 42 1 0.0337 -3.9363 0.7132 43 1 -2.0971 -2.7981 1.9075 44 1 -1.8949 -4.4562 2.5225 45 1 -6.7701 -2.9221 5.6795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713502101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:32 Heat of formation + Delta-G solvation = 7.088035 kcal Electronic energy + Delta-G solvation = -27343.951438 eV Core-core repulsion = 23490.101884 eV Total energy + Delta-G solvation = -3853.849554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.90365 -40.96649 -39.86737 -36.05040 -35.53103 -34.63972 -34.07896 -32.58707 -31.90578 -29.96258 -28.82661 -27.83278 -27.08629 -25.55950 -23.55638 -22.69057 -21.82933 -21.19950 -21.06110 -19.79063 -18.61435 -18.10237 -17.80747 -17.54462 -17.08042 -16.95493 -16.54757 -16.06811 -15.80463 -15.56830 -15.40510 -14.88973 -14.85508 -14.51293 -14.34137 -14.03340 -13.95938 -13.86635 -13.35219 -13.31385 -13.29374 -13.15095 -12.98065 -12.67445 -12.56721 -12.44142 -12.26059 -12.00596 -11.95536 -11.83341 -11.44483 -11.31444 -11.14348 -10.92022 -10.48687 -10.13923 -10.04571 -9.40359 -8.95198 -8.48858 -6.18657 0.49031 1.03052 1.24492 1.33540 1.49761 1.59556 1.65043 2.15395 2.26324 2.31374 2.75881 2.89792 2.96292 3.33007 3.61478 3.67186 3.71765 3.82896 3.95065 4.06477 4.10614 4.25305 4.27140 4.32772 4.47000 4.50837 4.56422 4.60513 4.65219 4.66466 4.72362 4.80101 4.87991 4.92989 5.01345 5.03960 5.08996 5.22514 5.24643 5.31814 5.48551 5.73578 5.90025 6.00743 6.14609 6.49850 6.96898 7.25784 7.26342 8.63502 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012626 B = 0.002986 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.089449 B = 9373.815035 C =11076.844518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.006 4.006 3 O 0.071 5.929 4 N -0.398 5.398 5 C 0.007 3.993 6 C -0.208 4.208 7 C 0.124 3.876 8 N -0.518 5.518 9 C 0.043 3.957 10 C -0.120 4.120 11 C -0.119 4.119 12 C 0.062 3.938 13 H 0.079 0.921 14 C 0.138 3.862 15 N -0.708 5.708 16 C 0.535 3.465 17 O -0.563 6.563 18 C -0.112 4.112 19 S -0.174 6.174 20 C -0.526 4.526 21 H 0.063 0.937 22 C 0.046 3.954 23 N -0.918 5.918 24 Si 0.913 3.087 25 H -0.263 1.263 26 H -0.261 1.261 27 H -0.235 1.235 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.212 0.788 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.408 0.592 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.109 -0.901 -16.236 28.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 O 0.011 5.989 4 N -0.107 5.107 5 C -0.172 4.172 6 C -0.212 4.212 7 C -0.004 4.004 8 N -0.243 5.243 9 C -0.084 4.084 10 C -0.158 4.158 11 C -0.158 4.158 12 C -0.047 4.047 13 H 0.097 0.903 14 C 0.014 3.986 15 N -0.363 5.363 16 C 0.321 3.679 17 O -0.441 6.441 18 C -0.263 4.263 19 S 0.052 5.948 20 C -0.674 4.674 21 H 0.081 0.919 22 C -0.160 4.160 23 N -0.557 5.557 24 Si 0.735 3.265 25 H -0.188 1.188 26 H -0.186 1.186 27 H -0.159 1.159 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.228 0.772 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.247 0.753 43 H 0.133 0.867 44 H 0.129 0.871 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 22.034 -0.170 -17.557 28.173 hybrid contribution 0.802 -0.367 1.813 2.017 sum 22.836 -0.537 -15.743 27.742 Atomic orbital electron populations 1.20476 0.82830 1.05510 1.04766 1.24744 0.96872 0.85565 0.99865 1.84790 1.11652 1.34066 1.68396 1.73890 0.97576 1.18069 1.21117 1.25329 1.00567 0.89870 1.01447 1.20980 0.91774 0.97237 1.11211 1.20597 1.00576 0.88180 0.91012 1.64733 1.39264 1.14538 1.05720 1.23122 0.92644 0.99763 0.92853 1.22463 1.01574 0.94859 0.96943 1.22368 1.01744 0.98213 0.93436 1.22621 0.94070 0.88285 0.99714 0.90342 1.21502 0.94378 0.99189 0.83561 1.45900 1.06531 1.66728 1.17168 1.19903 0.82980 0.77233 0.87806 1.90694 1.53832 1.47562 1.52044 1.23282 0.98542 1.06404 0.98077 1.84737 1.05273 1.86350 1.18397 1.22472 0.97180 1.49240 0.98514 0.91918 1.25547 1.01065 0.93781 0.95567 1.70019 1.24216 1.46033 1.15394 0.85888 0.79541 0.79577 0.81506 1.18812 1.18565 1.15899 0.88736 0.89171 0.88365 0.77150 0.89464 0.91000 0.92427 0.91768 0.89469 0.91627 0.89169 0.90483 0.91326 0.92141 0.75334 0.86746 0.87125 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 10.30 71.24 0.73 -0.55 16 2 C -0.01 -0.12 7.49 25.04 0.19 0.07 16 3 O 0.07 1.61 11.20 71.60 0.80 2.41 16 4 N -0.40 -8.92 12.07 -59.25 -0.72 -9.64 16 5 C 0.01 0.12 12.02 85.71 1.03 1.15 16 6 C -0.21 -3.29 4.72 -19.73 -0.09 -3.38 16 7 C 0.12 1.50 4.90 85.56 0.42 1.92 16 8 N -0.52 -6.62 4.94 -862.58 -4.26 -10.89 16 9 C 0.04 0.49 5.56 86.65 0.48 0.97 16 10 C -0.12 -1.14 7.06 31.80 0.22 -0.91 16 11 C -0.12 -1.07 6.57 31.47 0.21 -0.86 16 12 C 0.06 0.70 2.70 45.06 0.12 0.83 16 13 H 0.08 0.69 7.64 -2.39 -0.02 0.67 16 14 C 0.14 2.50 5.12 86.38 0.44 2.94 16 15 N -0.71 -14.90 5.32 -463.06 -2.46 -17.36 16 16 C 0.54 17.12 7.85 87.66 0.69 17.80 16 17 O -0.56 -22.96 15.85 -3.03 -0.05 -23.01 16 18 C -0.11 -3.97 6.16 71.24 0.44 -3.53 16 19 S -0.17 -8.53 18.55 -56.49 -1.05 -9.57 16 20 C -0.53 -29.96 10.04 67.95 0.68 -29.28 16 21 H 0.06 3.76 8.03 -2.91 -0.02 3.73 16 22 C 0.05 2.64 5.50 84.86 0.47 3.11 16 23 N -0.92 -55.39 13.97 21.65 0.30 -55.09 16 24 Si 0.91 44.43 27.74 68.60 1.90 46.33 16 25 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 26 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.24 -11.38 6.74 99.48 0.67 -10.71 16 28 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 30 H 0.10 1.70 8.05 -2.39 -0.02 1.68 16 31 H 0.21 2.04 8.06 -2.91 -0.02 2.02 16 32 H 0.09 1.08 5.52 -2.39 -0.01 1.07 16 33 H 0.07 0.61 7.92 -2.38 -0.02 0.59 16 34 H 0.06 0.51 8.02 -2.39 -0.02 0.49 16 35 H 0.06 0.93 7.93 -2.39 -0.02 0.91 16 36 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.08 0.77 7.69 -2.39 -0.02 0.76 16 40 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.06 1.36 8.12 -2.39 -0.02 1.35 16 42 H 0.41 6.38 5.61 -92.71 -0.52 5.86 16 43 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 44 H 0.11 3.59 8.14 -2.40 -0.02 3.57 16 45 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -74.47 382.60 0.95 -73.52 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.45 Total: 13.04 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 6.03 Total: -9.74 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -7.14 Total: -92.98 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: 0.75 Total: -20.60 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.90 Total: 46.33 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.05 Total: -9.57 kcal Total: -74.47 0.95 -73.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713502101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.609 kcal (2) G-P(sol) polarization free energy of solvation -74.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds