Wall clock time and date at job start Tue Mar 31 2020 22:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41381 * 126.80230 * 2 1 4 4 C 1.35450 * 103.98726 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.77978 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.47189 * 89.99836 * 5 4 3 7 7 C 1.47905 * 111.00050 * 69.87367 * 6 5 4 8 8 C 1.53991 * 107.22505 * 214.25344 * 7 6 5 9 9 C 1.54594 * 105.14285 * 1.12969 * 8 7 6 10 10 H 1.08999 * 110.72080 * 263.59761 * 9 8 7 11 11 C 1.53003 * 110.72619 * 140.49275 * 9 8 7 12 12 N 1.46491 * 109.47193 * 66.45299 * 11 9 8 13 13 C 1.34776 * 120.00395 * 180.02562 * 12 11 9 14 14 O 1.21280 * 119.99687 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00394 * 180.02562 * 13 12 11 16 16 S 1.81000 * 109.47083 * 179.97438 * 15 13 12 17 17 C 1.76199 * 99.99934 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00005 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00104 * 179.97438 * 17 16 15 20 20 N 1.31628 * 120.00351 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99609 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46858 * 90.00199 * 21 19 17 23 23 H 1.48499 * 109.46904 * 209.99674 * 21 19 17 24 24 H 1.48500 * 109.47437 * 329.99888 * 21 19 17 25 25 C 1.48813 * 111.18681 * 312.54033 * 6 5 4 26 26 O 1.34050 * 106.44377 * 0.24369 * 4 3 2 27 27 N 1.20919 * 111.56537 * 359.56330 * 26 4 3 28 28 H 1.09004 * 109.47220 * 89.99553 * 1 2 3 29 29 H 1.08995 * 109.47193 * 209.99614 * 1 2 3 30 30 H 1.08997 * 109.46884 * 329.99955 * 1 2 3 31 31 H 1.08002 * 128.00604 * 0.04186 * 3 2 1 32 32 H 1.08999 * 109.46679 * 330.00231 * 5 4 3 33 33 H 1.08996 * 109.47104 * 209.99965 * 5 4 3 34 34 H 1.09002 * 109.91668 * 94.80258 * 7 6 5 35 35 H 1.09002 * 109.91761 * 333.70433 * 7 6 5 36 36 H 1.09005 * 110.30467 * 120.04331 * 8 7 6 37 37 H 1.08997 * 110.31304 * 242.20852 * 8 7 6 38 38 H 1.08992 * 109.47001 * 186.45446 * 11 9 8 39 39 H 1.09001 * 109.46697 * 306.45467 * 11 9 8 40 40 H 0.97003 * 120.00110 * 0.02562 * 12 11 9 41 41 H 1.08999 * 109.46745 * 299.99243 * 15 13 12 42 42 H 1.08992 * 109.47357 * 59.99669 * 15 13 12 43 43 H 0.96995 * 119.99950 * 179.97438 * 20 19 17 44 44 H 1.08998 * 110.51915 * 41.07024 * 25 6 5 45 45 H 1.09004 * 110.69711 * 278.02347 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6025 0.6068 -0.0006 5 6 4.9023 1.3695 -0.0014 6 7 5.3253 1.6176 1.3833 7 6 5.7479 0.3622 2.0414 8 6 5.3437 0.4660 3.5237 9 6 4.6440 1.8382 3.6564 10 1 5.3431 2.5947 4.0127 11 6 3.4337 1.7410 4.5873 12 7 3.8877 1.4540 5.9502 13 6 2.9893 1.3237 6.9465 14 8 1.8050 1.4445 6.7146 15 6 3.4564 1.0290 8.3486 16 16 2.0246 0.9139 9.4498 17 6 2.8383 0.5729 10.9750 18 1 3.9151 0.4972 11.0074 19 6 2.0953 0.4025 12.1351 20 7 2.7032 0.1482 13.2746 21 14 0.2328 0.5340 12.0790 22 1 -0.3499 -0.8042 11.8054 23 1 -0.2676 1.0342 13.3847 24 1 -0.1648 1.4766 11.0026 25 6 4.2001 2.1426 2.2036 26 8 3.4538 -0.7254 -0.0064 27 7 2.2869 -1.0423 -0.0006 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 2.0710 2.1743 0.0006 32 1 4.7648 2.3209 -0.5153 33 1 5.6657 0.7858 -0.5155 34 1 6.8284 0.2450 1.9585 35 1 5.2457 -0.4871 1.5782 36 1 4.6544 -0.3370 3.7850 37 1 6.2276 0.4290 4.1604 38 1 2.8904 2.6858 4.5767 39 1 2.7769 0.9404 4.2470 40 1 4.8349 1.3578 6.1358 41 1 4.0003 0.0845 8.3594 42 1 4.1126 1.8301 8.6889 43 1 2.1840 0.0295 14.0852 44 1 3.2757 1.6164 1.9655 45 1 4.0824 3.2159 2.0542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713522239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:27 Heat of formation + Delta-G solvation = -0.448751 kcal Electronic energy + Delta-G solvation = -26569.682862 eV Core-core repulsion = 22715.506488 eV Total energy + Delta-G solvation = -3854.176374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.00775 -40.92684 -40.01962 -36.46996 -35.78798 -34.68217 -34.31366 -32.26224 -30.90341 -30.14692 -29.57921 -27.91003 -27.45518 -25.38854 -24.13851 -22.60658 -21.73395 -21.32606 -20.81272 -19.88336 -18.82916 -18.25768 -17.88496 -17.61729 -17.13487 -16.96830 -16.54486 -16.23729 -15.84072 -15.60239 -15.17286 -14.97433 -14.89830 -14.65903 -14.36983 -14.25214 -14.16022 -14.03558 -13.65701 -13.42523 -13.36471 -13.18048 -13.01908 -12.80723 -12.65475 -12.61825 -12.17045 -11.96696 -11.91491 -11.85949 -11.60453 -11.18105 -11.03838 -10.94199 -10.54763 -10.42902 -10.17749 -9.67871 -9.00829 -8.52356 -6.23236 0.41369 0.97877 1.20255 1.30561 1.45836 1.54133 1.54944 2.12900 2.19819 2.25104 2.70568 2.85828 2.92997 3.24186 3.43412 3.58665 3.59293 3.80112 3.91558 4.02048 4.14582 4.21890 4.25227 4.33591 4.36035 4.39958 4.46007 4.55609 4.61265 4.61781 4.67709 4.72561 4.77405 4.83237 4.90926 4.92682 5.02020 5.13788 5.18807 5.23591 5.39059 5.70084 5.72137 5.84177 6.10837 6.44153 6.92844 7.16825 7.26495 8.60002 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017517 B = 0.002171 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.069124 B =12895.442934 C =13896.179948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.002 3.998 3 C -0.219 4.219 4 C -0.063 4.063 5 C 0.124 3.876 6 N -0.494 5.494 7 C 0.029 3.971 8 C -0.130 4.130 9 C -0.092 4.092 10 H 0.109 0.891 11 C 0.135 3.865 12 N -0.709 5.709 13 C 0.534 3.466 14 O -0.565 6.565 15 C -0.111 4.111 16 S -0.178 6.178 17 C -0.528 4.528 18 H 0.063 0.937 19 C 0.045 3.955 20 N -0.917 5.917 21 Si 0.914 3.086 22 H -0.264 1.264 23 H -0.258 1.258 24 H -0.236 1.236 25 C 0.031 3.969 26 O 0.083 5.917 27 N -0.405 5.405 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.197 0.803 32 H 0.138 0.862 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.039 0.961 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.417 0.583 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.277 0.723 44 H 0.050 0.950 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.520 5.769 -32.830 33.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.156 4.156 3 C -0.241 4.241 4 C -0.129 4.129 5 C -0.005 4.005 6 N -0.215 5.215 7 C -0.099 4.099 8 C -0.169 4.169 9 C -0.111 4.111 10 H 0.127 0.873 11 C 0.011 3.989 12 N -0.363 5.363 13 C 0.319 3.681 14 O -0.443 6.443 15 C -0.262 4.262 16 S 0.049 5.951 17 C -0.676 4.676 18 H 0.081 0.919 19 C -0.160 4.160 20 N -0.554 5.554 21 Si 0.736 3.264 22 H -0.188 1.188 23 H -0.183 1.183 24 H -0.160 1.160 25 C -0.097 4.097 26 O 0.020 5.980 27 N -0.112 5.112 28 H 0.113 0.887 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.214 0.786 32 H 0.156 0.844 33 H 0.130 0.870 34 H 0.117 0.883 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.254 0.746 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.821 4.985 -33.079 33.798 hybrid contribution 0.252 -0.490 1.069 1.203 sum 5.073 4.494 -32.010 32.720 Atomic orbital electron populations 1.20300 0.84552 1.04397 1.04359 1.24218 1.00371 0.89123 1.01932 1.22855 0.90704 1.01913 1.08656 1.26090 1.01037 0.83308 1.02460 1.21449 0.87498 0.99460 0.92105 1.65278 1.30821 1.24309 1.01138 1.23003 1.02342 0.90918 0.93604 1.22519 1.01166 0.96369 0.96797 1.22236 0.95858 0.98704 0.94314 0.87331 1.21295 0.96720 1.00601 0.80318 1.45683 1.10403 1.72634 1.07564 1.19980 0.85944 0.75780 0.86362 1.90689 1.18392 1.51085 1.84159 1.23265 1.01993 1.07009 0.93904 1.84724 1.12965 1.94046 1.03396 1.22455 0.95858 1.55581 0.93680 0.91870 1.25570 1.03489 0.92984 0.94005 1.70012 1.38234 1.47339 0.99863 0.85869 0.79969 0.80633 0.79910 1.18835 1.18269 1.16032 1.23512 0.93061 1.02256 0.90883 1.84813 1.21327 1.24284 1.67613 1.73857 0.90146 1.25752 1.21487 0.88698 0.91451 0.88284 0.78574 0.84379 0.86969 0.88313 0.94219 0.92949 0.88996 0.91506 0.93680 0.74591 0.86946 0.86577 0.91356 0.93174 0.87482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.48 71.24 0.75 -0.30 16 2 C 0.00 0.03 7.33 43.58 0.32 0.35 16 3 C -0.22 -2.90 9.16 22.40 0.21 -2.69 16 4 C -0.06 -0.86 5.01 25.04 0.13 -0.73 16 5 C 0.12 0.93 6.06 85.56 0.52 1.44 16 6 N -0.49 -4.90 5.54 -886.80 -4.92 -9.81 16 7 C 0.03 0.34 6.45 86.44 0.56 0.90 16 8 C -0.13 -1.70 6.20 31.47 0.19 -1.51 16 9 C -0.09 -1.16 3.12 -9.59 -0.03 -1.19 16 10 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 11 C 0.13 2.67 5.02 86.38 0.43 3.10 16 12 N -0.71 -16.08 5.40 -463.09 -2.50 -18.58 16 13 C 0.53 18.15 7.85 87.66 0.69 18.84 16 14 O -0.56 -24.18 15.86 -3.03 -0.05 -24.23 16 15 C -0.11 -4.13 6.16 71.23 0.44 -3.69 16 16 S -0.18 -9.00 18.55 -56.49 -1.05 -10.05 16 17 C -0.53 -30.76 10.04 67.96 0.68 -30.08 16 18 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 19 C 0.04 2.64 5.50 84.86 0.47 3.11 16 20 N -0.92 -55.88 13.97 21.65 0.30 -55.58 16 21 Si 0.91 45.16 27.74 68.60 1.90 47.06 16 22 H -0.26 -12.75 7.11 99.48 0.71 -12.05 16 23 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.24 -11.65 6.74 99.48 0.67 -10.98 16 25 C 0.03 0.34 5.68 86.59 0.49 0.83 16 26 O 0.08 1.70 10.30 71.55 0.74 2.43 16 27 N -0.40 -9.51 12.07 -49.55 -0.60 -10.11 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.20 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.11 0.61 8.08 -2.39 -0.02 0.59 16 34 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.04 0.59 6.33 -2.39 -0.02 0.57 16 36 H 0.05 0.91 7.80 -2.38 -0.02 0.89 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.04 1.09 8.07 -2.39 -0.02 1.07 16 40 H 0.42 6.75 8.33 -92.71 -0.77 5.98 16 41 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 42 H 0.12 3.92 8.14 -2.40 -0.02 3.90 16 43 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.05 0.70 4.86 -2.39 -0.01 0.69 16 45 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -78.55 381.85 -0.13 -78.69 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.20 Total: 11.80 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 5.84 Total: -11.62 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -7.71 Total: -94.08 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.69 Total: -21.79 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.90 Total: 47.06 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.05 Total: -10.05 kcal Total: -78.55 -0.13 -78.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713522239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.240 kcal (2) G-P(sol) polarization free energy of solvation -78.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds