Wall clock time and date at job start Tue Mar 31 2020 22:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41373 * 126.80412 * 2 1 4 4 C 1.35454 * 103.98731 * 180.09144 * 3 2 1 5 5 C 1.50697 * 126.77589 * 179.90847 * 4 3 2 6 6 N 1.46901 * 109.46958 * 89.71414 * 5 4 3 7 7 C 1.46908 * 110.99954 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47103 * 180.02562 * 7 6 5 9 9 H 1.09000 * 110.91493 * 57.44568 * 8 7 6 10 10 C 1.55405 * 111.03706 * 181.23001 * 8 7 6 11 11 C 1.54325 * 102.82616 * 153.46985 * 10 8 7 12 12 N 1.47018 * 107.40412 * 337.97548 * 11 10 8 13 13 C 1.34777 * 125.64981 * 178.82520 * 12 11 10 14 14 O 1.21275 * 120.00167 * 180.02562 * 13 12 11 15 15 C 1.50694 * 119.99872 * 0.02817 * 13 12 11 16 16 S 1.81005 * 109.47459 * 179.97438 * 15 13 12 17 17 C 1.76198 * 100.00346 * 180.02562 * 16 15 13 18 18 H 1.08006 * 119.99544 * 359.97438 * 17 16 15 19 19 C 1.38788 * 119.99998 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00249 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00208 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46879 * 59.99106 * 21 19 17 23 23 H 1.48492 * 109.47391 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46772 * 299.99845 * 21 19 17 25 25 C 1.47426 * 108.70517 * 358.86539 * 12 11 10 26 26 O 1.34042 * 106.44213 * 359.64969 * 4 3 2 27 27 N 1.20922 * 111.56985 * 0.23657 * 26 4 3 28 28 H 1.09000 * 109.47293 * 270.29037 * 1 2 3 29 29 H 1.08999 * 109.46724 * 30.29595 * 1 2 3 30 30 H 1.09003 * 109.46977 * 150.29010 * 1 2 3 31 31 H 1.07997 * 128.00901 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.47490 * 329.71228 * 5 4 3 33 33 H 1.09004 * 109.47199 * 209.70965 * 5 4 3 34 34 H 1.00899 * 111.00333 * 56.04511 * 6 5 4 35 35 H 1.08997 * 109.46871 * 60.00135 * 7 6 5 36 36 H 1.08997 * 109.46899 * 300.00085 * 7 6 5 37 37 H 1.09000 * 110.69068 * 35.18243 * 10 8 7 38 38 H 1.09002 * 110.85092 * 271.83237 * 10 8 7 39 39 H 1.09002 * 109.88192 * 218.47989 * 11 10 8 40 40 H 1.09000 * 109.88128 * 97.46841 * 11 10 8 41 41 H 1.08997 * 109.47569 * 299.99781 * 15 13 12 42 42 H 1.09007 * 109.47441 * 59.99852 * 15 13 12 43 43 H 0.97002 * 120.00418 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.36956 * 142.96999 * 25 12 11 45 45 H 1.09001 * 110.36709 * 265.18192 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6067 -0.0021 5 6 4.9022 1.3694 -0.0050 6 7 5.3236 1.6239 1.3791 7 6 6.5904 2.3669 1.4155 8 6 6.9963 2.6119 2.8702 9 1 7.0839 1.6710 3.4135 10 6 8.3189 3.4239 2.9512 11 6 8.2007 4.1361 4.3152 12 7 6.7731 4.1868 4.6625 13 6 6.2575 4.7118 5.7917 14 8 5.0587 4.6988 5.9742 15 6 7.1709 5.3152 6.8274 16 16 6.1857 5.9306 8.2156 17 6 7.4685 6.5637 9.2444 18 1 8.4987 6.4936 8.9277 19 6 7.1551 7.1513 10.4620 20 7 5.8996 7.2363 10.8481 21 14 8.5151 7.8218 11.5531 22 1 9.2577 8.8811 10.8239 23 1 7.9220 8.3944 12.7881 24 1 9.4469 6.7233 11.9141 25 6 5.9988 3.5673 3.5716 26 8 3.4537 -0.7254 0.0047 27 7 2.2868 -1.0424 0.0058 28 1 -0.3634 0.0052 1.0276 29 1 -0.3633 0.8873 -0.5184 30 1 -0.3633 -0.8926 -0.5093 31 1 2.0711 2.1742 0.0004 32 1 4.7655 2.3184 -0.5235 33 1 5.6664 0.7833 -0.5154 34 1 5.3949 0.7625 1.8996 35 1 6.4658 3.3227 0.9068 36 1 7.3660 1.7873 0.9150 37 1 8.3751 4.1502 2.1404 38 1 9.1833 2.7599 2.9364 39 1 8.6004 5.1475 4.2411 40 1 8.7472 3.5763 5.0742 41 1 7.8673 4.5564 7.1840 42 1 7.7283 6.1403 6.3840 43 1 5.6805 7.6473 11.6990 44 1 5.1561 3.0062 3.9756 45 1 5.6475 4.3292 2.8757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714337526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:47 Heat of formation + Delta-G solvation = 24.690465 kcal Electronic energy + Delta-G solvation = -25657.692478 eV Core-core repulsion = 21804.606223 eV Total energy + Delta-G solvation = -3853.086256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.23656 -39.85321 -37.84394 -36.40973 -35.09101 -33.15938 -32.41408 -31.46498 -29.60082 -29.02846 -28.95146 -26.48079 -25.46899 -24.34573 -23.39481 -22.70269 -20.91544 -20.27776 -19.25588 -17.95622 -17.73852 -17.56562 -16.62969 -16.46827 -16.28216 -15.27160 -15.02379 -14.96609 -14.79074 -14.43840 -13.88445 -13.87360 -13.72409 -13.62914 -13.48151 -13.38119 -13.10413 -12.81700 -12.62201 -12.57510 -12.31268 -12.07056 -11.74762 -11.46132 -11.40100 -11.17784 -11.03136 -11.02134 -10.93436 -10.75431 -10.31647 -9.81045 -9.80561 -9.35874 -9.04508 -8.98924 -8.43595 -8.21388 -6.48279 -6.19813 -3.90487 1.07866 1.90193 2.68405 2.96777 3.11906 3.24265 3.27152 3.30313 3.62729 3.68167 3.86840 4.02402 4.21833 4.31835 4.39968 4.47743 4.60772 4.67926 4.89246 4.93826 5.01812 5.02989 5.10166 5.12239 5.13147 5.15024 5.21344 5.35057 5.36455 5.42252 5.44526 5.53438 5.56937 5.66578 5.77641 5.78078 5.94585 5.99834 6.02024 6.16549 6.33724 6.50377 6.76057 7.60519 7.73566 7.94088 8.36517 8.61731 9.25065 10.87541 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018858 B = 0.001804 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.394326 B =15516.181144 C =16740.025429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.014 3.986 3 C -0.206 4.206 4 C -0.033 4.033 5 C 0.143 3.857 6 N -0.685 5.685 7 C 0.073 3.927 8 C -0.101 4.101 9 H 0.085 0.915 10 C -0.124 4.124 11 C 0.102 3.898 12 N -0.629 5.629 13 C 0.548 3.452 14 O -0.515 6.515 15 C -0.147 4.147 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.125 3.875 26 O 0.097 5.903 27 N -0.366 5.366 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.173 0.827 32 H 0.107 0.893 33 H 0.056 0.944 34 H 0.349 0.651 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.269 0.731 44 H 0.080 0.920 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.971 -12.732 -26.932 29.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.145 4.145 3 C -0.229 4.229 4 C -0.097 4.097 5 C 0.013 3.987 6 N -0.317 5.317 7 C -0.056 4.056 8 C -0.121 4.121 9 H 0.103 0.897 10 C -0.162 4.162 11 C -0.022 4.022 12 N -0.367 5.367 13 C 0.336 3.664 14 O -0.389 6.389 15 C -0.297 4.297 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.200 1.200 25 C 0.002 3.998 26 O 0.030 5.970 27 N -0.071 5.071 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.190 0.810 32 H 0.125 0.875 33 H 0.074 0.926 34 H 0.167 0.833 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.592 -13.404 -26.361 29.616 hybrid contribution 2.857 0.624 0.288 2.938 sum 1.265 -12.780 -26.073 29.064 Atomic orbital electron populations 1.20185 0.85866 1.03726 1.03654 1.23666 0.99187 0.88862 1.02771 1.22459 0.91038 1.01236 1.08121 1.24306 0.98306 0.83562 1.03532 1.20306 0.88915 0.98035 0.91395 1.60473 1.32501 1.27200 1.11571 1.21928 0.88931 0.98841 0.95939 1.22423 0.95162 0.99218 0.95302 0.89650 1.22696 0.97417 0.99114 0.97001 1.21956 0.82959 1.00892 0.96371 1.48547 1.07456 1.61183 1.19519 1.19993 0.88861 0.77094 0.80449 1.90709 1.15496 1.56074 1.76668 1.23508 1.02696 1.03038 1.00482 1.85403 1.10399 1.75212 1.12423 1.22819 0.94150 1.45091 1.06305 0.91006 1.24989 0.96276 0.95378 0.96935 1.70011 1.16892 1.41740 1.21635 0.86227 0.80936 0.79125 0.79222 1.19950 1.20806 1.19952 1.22049 0.94559 0.94894 0.88317 1.84800 1.21758 1.22857 1.67587 1.73853 0.89273 1.24164 1.19767 0.89942 0.89916 0.90629 0.80955 0.87515 0.92630 0.83257 0.90056 0.94135 0.90341 0.89961 0.91314 0.91378 0.89397 0.89383 0.92136 0.90153 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.47 36.01 0.38 -0.11 16 2 C 0.01 0.13 7.33 -82.10 -0.60 -0.48 16 3 C -0.21 -1.67 11.06 -39.38 -0.44 -2.10 16 4 C -0.03 -0.26 7.00 -35.30 -0.25 -0.51 16 5 C 0.14 0.74 6.25 -4.98 -0.03 0.71 16 6 N -0.69 -4.34 6.31 -115.05 -0.73 -5.07 16 7 C 0.07 0.39 5.14 -3.82 -0.02 0.37 16 8 C -0.10 -0.76 3.23 -88.33 -0.28 -1.05 16 9 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 10 C -0.12 -0.84 6.45 -24.76 -0.16 -0.99 16 11 C 0.10 1.05 6.48 -3.07 -0.02 1.03 16 12 N -0.63 -9.15 3.33 -170.52 -0.57 -9.72 16 13 C 0.55 10.85 7.87 -10.99 -0.09 10.76 16 14 O -0.52 -12.31 16.12 5.56 0.09 -12.22 16 15 C -0.15 -3.07 5.35 36.00 0.19 -2.88 16 16 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 17 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16 18 H 0.07 1.94 7.80 -52.48 -0.41 1.54 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 21 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 C 0.12 1.48 6.21 -2.53 -0.02 1.46 16 26 O 0.10 0.96 11.20 17.17 0.19 1.15 16 27 N -0.37 -4.07 12.07 33.42 0.40 -3.67 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.35 2.26 8.72 -39.29 -0.34 1.92 16 35 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 36 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 37 H 0.08 0.45 8.04 -51.93 -0.42 0.03 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 42 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 45 H 0.06 0.76 8.01 -51.93 -0.42 0.35 16 LS Contribution 394.29 15.07 5.94 5.94 Total: -1.00 -36.56 394.29 -9.36 -45.91 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -7.05 Total: -2.42 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -1.13 Total: -6.84 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: -0.16 Total: -44.08 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.28 Total: -11.07 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.56 -9.36 -45.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714337526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.602 kcal (2) G-P(sol) polarization free energy of solvation -36.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds