Wall clock time and date at job start Tue Mar 31 2020 22:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41373 * 126.80412 * 2 1 4 4 C 1.35454 * 103.98731 * 180.09144 * 3 2 1 5 5 C 1.50697 * 126.77589 * 179.90847 * 4 3 2 6 6 N 1.46901 * 109.46958 * 89.71414 * 5 4 3 7 7 C 1.46908 * 110.99954 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47103 * 180.02562 * 7 6 5 9 9 H 1.09000 * 110.91493 * 57.44568 * 8 7 6 10 10 C 1.55405 * 111.03706 * 181.23001 * 8 7 6 11 11 C 1.54325 * 102.82616 * 153.46985 * 10 8 7 12 12 N 1.47018 * 107.40412 * 337.97548 * 11 10 8 13 13 C 1.34777 * 125.64981 * 178.82520 * 12 11 10 14 14 O 1.21275 * 120.00167 * 180.02562 * 13 12 11 15 15 C 1.50694 * 119.99872 * 0.02817 * 13 12 11 16 16 S 1.81005 * 109.47459 * 179.97438 * 15 13 12 17 17 C 1.76198 * 100.00346 * 180.02562 * 16 15 13 18 18 H 1.08006 * 119.99544 * 359.97438 * 17 16 15 19 19 C 1.38788 * 119.99998 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00249 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00208 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46879 * 59.99106 * 21 19 17 23 23 H 1.48492 * 109.47391 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46772 * 299.99845 * 21 19 17 25 25 C 1.47426 * 108.70517 * 358.86539 * 12 11 10 26 26 O 1.34042 * 106.44213 * 359.64969 * 4 3 2 27 27 N 1.20922 * 111.56985 * 0.23657 * 26 4 3 28 28 H 1.09000 * 109.47293 * 270.29037 * 1 2 3 29 29 H 1.08999 * 109.46724 * 30.29595 * 1 2 3 30 30 H 1.09003 * 109.46977 * 150.29010 * 1 2 3 31 31 H 1.07997 * 128.00901 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.47490 * 329.71228 * 5 4 3 33 33 H 1.09004 * 109.47199 * 209.70965 * 5 4 3 34 34 H 1.00899 * 111.00333 * 56.04511 * 6 5 4 35 35 H 1.08997 * 109.46871 * 60.00135 * 7 6 5 36 36 H 1.08997 * 109.46899 * 300.00085 * 7 6 5 37 37 H 1.09000 * 110.69068 * 35.18243 * 10 8 7 38 38 H 1.09002 * 110.85092 * 271.83237 * 10 8 7 39 39 H 1.09002 * 109.88192 * 218.47989 * 11 10 8 40 40 H 1.09000 * 109.88128 * 97.46841 * 11 10 8 41 41 H 1.08997 * 109.47569 * 299.99781 * 15 13 12 42 42 H 1.09007 * 109.47441 * 59.99852 * 15 13 12 43 43 H 0.97002 * 120.00418 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.36956 * 142.96999 * 25 12 11 45 45 H 1.09001 * 110.36709 * 265.18192 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6067 -0.0021 5 6 4.9022 1.3694 -0.0050 6 7 5.3236 1.6239 1.3791 7 6 6.5904 2.3669 1.4155 8 6 6.9963 2.6119 2.8702 9 1 7.0839 1.6710 3.4135 10 6 8.3189 3.4239 2.9512 11 6 8.2007 4.1361 4.3152 12 7 6.7731 4.1868 4.6625 13 6 6.2575 4.7118 5.7917 14 8 5.0587 4.6988 5.9742 15 6 7.1709 5.3152 6.8274 16 16 6.1857 5.9306 8.2156 17 6 7.4685 6.5637 9.2444 18 1 8.4987 6.4936 8.9277 19 6 7.1551 7.1513 10.4620 20 7 5.8996 7.2363 10.8481 21 14 8.5151 7.8218 11.5531 22 1 9.2577 8.8811 10.8239 23 1 7.9220 8.3944 12.7881 24 1 9.4469 6.7233 11.9141 25 6 5.9988 3.5673 3.5716 26 8 3.4537 -0.7254 0.0047 27 7 2.2868 -1.0424 0.0058 28 1 -0.3634 0.0052 1.0276 29 1 -0.3633 0.8873 -0.5184 30 1 -0.3633 -0.8926 -0.5093 31 1 2.0711 2.1742 0.0004 32 1 4.7655 2.3184 -0.5235 33 1 5.6664 0.7833 -0.5154 34 1 5.3949 0.7625 1.8996 35 1 6.4658 3.3227 0.9068 36 1 7.3660 1.7873 0.9150 37 1 8.3751 4.1502 2.1404 38 1 9.1833 2.7599 2.9364 39 1 8.6004 5.1475 4.2411 40 1 8.7472 3.5763 5.0742 41 1 7.8673 4.5564 7.1840 42 1 7.7283 6.1403 6.3840 43 1 5.6805 7.6473 11.6990 44 1 5.1561 3.0062 3.9756 45 1 5.6475 4.3292 2.8757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714337526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:46 Heat of formation + Delta-G solvation = -1.114520 kcal Electronic energy + Delta-G solvation = -25658.811466 eV Core-core repulsion = 21804.606223 eV Total energy + Delta-G solvation = -3854.205244 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.91075 -41.02628 -38.89273 -37.15150 -35.72092 -34.59234 -33.98061 -32.37038 -30.81349 -29.94559 -29.59169 -27.74057 -27.11983 -25.14788 -24.05132 -23.45695 -21.54602 -20.89470 -20.67127 -19.54954 -18.64906 -18.27717 -17.99476 -17.45013 -16.95542 -16.88430 -16.43494 -16.06486 -15.66376 -15.51845 -15.39399 -14.64841 -14.53253 -14.32783 -14.21145 -14.14050 -14.04056 -13.91932 -13.73396 -13.39249 -13.24682 -13.16822 -13.07755 -12.86438 -12.63232 -12.57576 -12.10369 -12.03470 -11.88488 -11.72743 -11.54074 -11.13172 -10.95683 -10.94894 -10.45084 -10.29396 -9.65270 -9.39870 -8.69190 -8.34675 -6.14095 0.45490 1.24425 1.25998 1.44191 1.45365 1.55544 1.57504 2.12538 2.15140 2.27412 2.99104 3.13202 3.28095 3.29111 3.49972 3.65441 3.67635 3.87694 4.00551 4.08479 4.20767 4.22383 4.36530 4.37843 4.42513 4.47184 4.49399 4.61122 4.65732 4.69874 4.73336 4.80789 4.85301 4.91378 4.95064 4.98362 5.05032 5.14875 5.24136 5.35136 5.40584 5.47657 5.94184 6.19081 6.30084 6.43174 7.05837 7.13757 7.29307 8.74431 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018858 B = 0.001804 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.394326 B =15516.181144 C =16740.025429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.002 3.998 3 C -0.219 4.219 4 C -0.030 4.030 5 C 0.148 3.852 6 N -0.702 5.702 7 C 0.080 3.920 8 C -0.088 4.088 9 H 0.084 0.916 10 C -0.109 4.109 11 C 0.086 3.914 12 N -0.620 5.620 13 C 0.542 3.458 14 O -0.571 6.571 15 C -0.119 4.119 16 S -0.154 6.154 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 1.001 2.999 22 H -0.261 1.261 23 H -0.279 1.279 24 H -0.261 1.261 25 C 0.119 3.881 26 O 0.082 5.918 27 N -0.402 5.402 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.190 0.810 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.346 0.654 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.271 0.729 44 H 0.050 0.950 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.148 -12.530 -28.803 31.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.156 4.156 3 C -0.241 4.241 4 C -0.094 4.094 5 C 0.019 3.981 6 N -0.335 5.335 7 C -0.049 4.049 8 C -0.108 4.108 9 H 0.102 0.898 10 C -0.147 4.147 11 C -0.036 4.036 12 N -0.355 5.355 13 C 0.330 3.670 14 O -0.450 6.450 15 C -0.270 4.270 16 S 0.073 5.927 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.185 1.185 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.003 4.003 26 O 0.018 5.982 27 N -0.110 5.110 28 H 0.103 0.897 29 H 0.121 0.879 30 H 0.095 0.905 31 H 0.207 0.793 32 H 0.141 0.859 33 H 0.092 0.908 34 H 0.164 0.836 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.646 -13.223 -28.295 31.276 hybrid contribution 1.869 0.517 0.750 2.080 sum 3.516 -12.706 -27.545 30.537 Atomic orbital electron populations 1.20306 0.84266 1.04805 1.04106 1.24224 1.00502 0.88976 1.01866 1.22772 0.91091 1.01804 1.08429 1.24863 0.99516 0.82883 1.02093 1.20445 0.87960 0.98665 0.91076 1.60465 1.33438 1.27335 1.12264 1.21904 0.89156 0.99563 0.94271 1.22367 0.94172 0.97954 0.96283 0.89804 1.22717 0.97595 0.99380 0.95011 1.22386 0.80019 1.02234 0.98917 1.48543 1.10019 1.58833 1.18106 1.19790 0.87896 0.77552 0.81736 1.90682 1.17454 1.58676 1.78167 1.23297 1.01776 1.03839 0.98055 1.85610 1.14251 1.76279 1.16523 1.23158 0.94338 1.45218 1.06731 0.89860 1.26165 0.99108 0.95399 0.98546 1.70186 1.19546 1.42774 1.22286 0.84978 0.77296 0.78755 0.76800 1.18524 1.20360 1.18598 1.22256 0.94960 0.95565 0.87521 1.84749 1.21454 1.24016 1.67961 1.73840 0.89941 1.25450 1.21730 0.89710 0.87902 0.90493 0.79311 0.85863 0.90791 0.83610 0.89185 0.91520 0.88409 0.87168 0.90481 0.90829 0.87714 0.87582 0.91961 0.93091 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.47 71.24 0.75 -0.21 16 2 C 0.00 0.04 7.33 43.58 0.32 0.36 16 3 C -0.22 -3.39 11.06 22.40 0.25 -3.15 16 4 C -0.03 -0.44 7.00 25.04 0.18 -0.26 16 5 C 0.15 1.17 6.25 85.56 0.53 1.70 16 6 N -0.70 -7.38 6.31 -517.92 -3.27 -10.65 16 7 C 0.08 0.56 5.14 86.30 0.44 1.00 16 8 C -0.09 -1.06 3.23 -9.31 -0.03 -1.09 16 9 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 10 C -0.11 -0.98 6.45 31.87 0.21 -0.77 16 11 C 0.09 1.53 6.48 86.73 0.56 2.09 16 12 N -0.62 -17.44 3.33 -811.80 -2.70 -20.14 16 13 C 0.54 21.80 7.87 87.66 0.69 22.49 16 14 O -0.57 -28.58 16.12 -3.01 -0.05 -28.63 16 15 C -0.12 -4.96 5.35 71.23 0.38 -4.58 16 16 S -0.15 -8.81 20.57 -56.49 -1.16 -9.97 16 17 C -0.55 -31.66 9.50 67.95 0.65 -31.02 16 18 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 19 C 0.01 0.72 5.49 84.85 0.47 1.19 16 20 N -0.91 -56.67 13.22 21.65 0.29 -56.39 16 21 Si 1.00 43.74 29.55 68.60 2.03 45.77 16 22 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 25 C 0.12 2.72 6.21 86.86 0.54 3.26 16 26 O 0.08 1.64 11.20 71.62 0.80 2.44 16 27 N -0.40 -9.16 12.07 -49.56 -0.60 -9.76 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.10 0.80 8.14 -2.39 -0.02 0.79 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.19 2.11 8.06 -2.91 -0.02 2.08 16 32 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.35 3.98 8.72 -89.70 -0.78 3.19 16 35 H 0.09 0.53 8.10 -2.39 -0.02 0.51 16 36 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.10 0.59 8.04 -2.39 -0.02 0.57 16 38 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.10 3.99 8.14 -2.40 -0.02 3.97 16 42 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 43 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 44 H 0.05 1.47 8.04 -2.39 -0.02 1.45 16 45 H 0.07 1.53 8.01 -2.39 -0.02 1.51 16 Total: -1.00 -84.70 394.29 1.47 -83.23 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.21 Total: 13.08 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 5.93 Total: -8.99 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -6.28 Total: -96.93 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: 0.75 Total: -26.18 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.16 Total: -9.97 kcal Total: -84.70 1.47 -83.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714337526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.113 kcal (2) G-P(sol) polarization free energy of solvation -84.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds