Wall clock time and date at job start Tue Mar 31 2020 22:14:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.41382 * 126.80336 * 2 1
4 4 C 1.35451 * 103.98361 * 179.89079 * 3 2 1
5 5 C 1.50700 * 126.77407 * 180.14194 * 4 3 2
6 6 N 1.46901 * 109.47081 * 90.29783 * 5 4 3
7 7 C 1.46901 * 110.99834 * 180.02562 * 6 5 4
8 8 C 1.53011 * 109.47063 * 180.02562 * 7 6 5
9 9 H 1.09004 * 110.88295 * 302.57088 * 8 7 6
10 10 C 1.55157 * 111.00394 * 178.64835 * 8 7 6
11 11 C 1.54326 * 102.94085 * 206.42291 * 10 8 7
12 12 N 1.47019 * 107.27119 * 22.19227 * 11 10 8
13 13 C 1.34778 * 125.65093 * 181.09195 * 12 11 10
14 14 O 1.21281 * 120.00301 * 179.97438 * 13 12 11
15 15 C 1.50695 * 119.99429 * 359.96444 * 13 12 11
16 16 S 1.81007 * 109.47179 * 179.97438 * 15 13 12
17 17 C 1.76190 * 100.00324 * 179.97438 * 16 15 13
18 18 H 1.08000 * 120.00212 * 0.02562 * 17 16 15
19 19 C 1.38804 * 120.00118 * 179.97438 * 17 16 15
20 20 N 1.31635 * 119.99902 * 180.02562 * 19 17 16
21 21 Si 1.86795 * 119.99895 * 0.02562 * 19 17 16
22 22 H 1.48507 * 109.47120 * 89.99801 * 21 19 17
23 23 H 1.48493 * 109.47283 * 209.99620 * 21 19 17
24 24 H 1.48499 * 109.47057 * 330.00245 * 21 19 17
25 25 C 1.47427 * 108.70363 * 1.06099 * 12 11 10
26 26 O 1.34042 * 106.44814 * 0.36696 * 4 3 2
27 27 N 1.20923 * 111.56325 * 359.75355 * 26 4 3
28 28 H 1.09002 * 109.47152 * 269.70703 * 1 2 3
29 29 H 1.09001 * 109.46980 * 149.70803 * 1 2 3
30 30 H 1.09004 * 109.47113 * 29.70784 * 1 2 3
31 31 H 1.07997 * 128.00331 * 0.02619 * 3 2 1
32 32 H 1.08989 * 109.47389 * 210.29893 * 5 4 3
33 33 H 1.08998 * 109.47148 * 330.30145 * 5 4 3
34 34 H 1.00898 * 111.00376 * 56.04478 * 6 5 4
35 35 H 1.09001 * 109.47214 * 299.99631 * 7 6 5
36 36 H 1.08994 * 109.47275 * 59.99999 * 7 6 5
37 37 H 1.09005 * 110.71735 * 324.78609 * 10 8 7
38 38 H 1.09001 * 110.72007 * 88.06032 * 10 8 7
39 39 H 1.09003 * 109.87956 * 262.77723 * 11 10 8
40 40 H 1.08993 * 110.00777 * 141.68052 * 11 10 8
41 41 H 1.08999 * 109.47222 * 299.99433 * 15 13 12
42 42 H 1.09004 * 109.47815 * 59.99710 * 15 13 12
43 43 H 0.96993 * 119.99509 * 180.02562 * 20 19 17
44 44 H 1.09003 * 110.36710 * 217.02960 * 25 12 11
45 45 H 1.08996 * 110.36831 * 94.71270 * 25 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3540 1.1320 0.0000
4 6 3.6025 0.6067 0.0025
5 6 4.9022 1.3694 0.0066
6 7 5.3247 1.6095 1.3929
7 6 6.5909 2.3530 1.4361
8 6 6.9980 2.5829 2.8930
9 1 6.2170 3.1160 3.4352
10 6 8.3509 3.3374 2.9800
11 6 8.9112 2.8862 4.3454
12 7 8.2581 1.6139 4.6862
13 6 8.4614 0.9038 5.8136
14 8 7.8647 -0.1372 5.9906
15 6 9.4303 1.4032 6.8540
16 16 9.4816 0.2390 8.2391
17 6 10.6568 1.0463 9.2742
18 1 11.0998 1.9804 8.9618
19 6 11.0125 0.4824 10.4916
20 7 11.8901 1.0858 11.2651
21 14 10.2457 -1.1329 11.0322
22 1 11.0785 -2.2629 10.5475
23 1 10.1707 -1.1736 12.5146
24 1 8.8784 -1.2465 10.4639
25 6 7.3434 1.2437 3.5909
26 8 3.4538 -0.7254 -0.0044
27 7 2.2868 -1.0423 -0.0058
28 1 -0.3633 -0.0053 1.0277
29 1 -0.3633 -0.8874 -0.5184
30 1 -0.3633 0.8926 -0.5093
31 1 2.0710 2.1743 0.0004
32 1 5.6659 0.7888 -0.5106
33 1 4.7650 2.3238 -0.5018
34 1 5.3964 0.7427 1.9044
35 1 7.3666 1.7794 0.9287
36 1 6.4651 3.3142 0.9377
37 1 9.0150 3.0330 2.1710
38 1 8.1927 4.4158 2.9655
39 1 8.6842 3.6345 5.1048
40 1 9.9895 2.7427 4.2770
41 1 10.4239 1.4888 6.4140
42 1 9.1066 2.3803 7.2130
43 1 12.1389 0.6915 12.1156
44 1 6.4412 0.7803 3.9903
45 1 7.8401 0.5694 2.8933
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001714337527.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:14:49
Heat of formation + Delta-G solvation = 24.409349 kcal
Electronic energy + Delta-G solvation = -25707.165159 eV
Core-core repulsion = 21854.066714 eV
Total energy + Delta-G solvation = -3853.098446 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-45.26745 -40.01868 -37.97829 -36.46491 -35.12929 -33.23555 -32.43653 -31.54606
-29.74987 -29.08153 -29.05244 -26.52359 -25.60903 -24.59915 -23.43573 -22.72276
-20.85244 -20.33338 -19.44047 -17.97436 -17.78347 -17.64693 -17.00838 -16.69309
-15.86290 -15.38124 -15.23973 -15.03236 -14.88995 -14.42459 -14.17290 -13.87985
-13.76740 -13.65168 -13.55369 -13.41459 -13.19517 -12.85427 -12.70161 -12.68210
-12.55428 -12.30603 -11.91263 -11.48661 -11.43890 -11.25309 -11.17370 -11.01957
-10.98655 -10.59577 -10.36137 -9.85841 -9.84624 -9.53236 -9.05536 -8.99976
-8.59323 -8.49466 -6.91913 -6.28780 -4.00519 1.04860 1.86031 2.65307
2.69200 2.94295 3.20212 3.33823 3.51484 3.59701 3.64177 3.82752
3.98842 4.19386 4.27767 4.33788 4.49185 4.59252 4.63796 4.70705
4.83841 4.90737 4.95852 4.97919 5.06122 5.06472 5.10343 5.14451
5.19373 5.24015 5.35439 5.37575 5.38329 5.49503 5.55715 5.63372
5.70828 5.72884 5.84981 5.94199 6.01630 6.30275 6.33971 6.71863
7.56910 7.91557 7.94306 8.41488 8.43280 9.17479 10.80388
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.017139 B = 0.001886 C = 0.001736
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1633.307380 B =14841.101079 C =16122.420560
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.012 3.988
3 C -0.209 4.209
4 C -0.032 4.032
5 C 0.141 3.859
6 N -0.688 5.688
7 C 0.072 3.928
8 C -0.101 4.101
9 H 0.096 0.904
10 C -0.124 4.124
11 C 0.100 3.900
12 N -0.624 5.624
13 C 0.546 3.454
14 O -0.518 6.518
15 C -0.117 4.117
16 S -0.143 6.143
17 C -0.521 4.521
18 H 0.088 0.912
19 C 0.096 3.904
20 N -0.880 5.880
21 Si 0.856 3.144
22 H -0.267 1.267
23 H -0.274 1.274
24 H -0.235 1.235
25 C 0.109 3.891
26 O 0.099 5.901
27 N -0.363 5.363
28 H 0.081 0.919
29 H 0.075 0.925
30 H 0.081 0.919
31 H 0.172 0.828
32 H 0.057 0.943
33 H 0.107 0.893
34 H 0.351 0.649
35 H 0.040 0.960
36 H 0.083 0.917
37 H 0.077 0.923
38 H 0.085 0.915
39 H 0.071 0.929
40 H 0.071 0.929
41 H 0.096 0.904
42 H 0.096 0.904
43 H 0.271 0.729
44 H 0.079 0.921
45 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.034 7.123 -28.166 33.184
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.147 4.147
3 C -0.231 4.231
4 C -0.096 4.096
5 C 0.012 3.988
6 N -0.321 5.321
7 C -0.057 4.057
8 C -0.120 4.120
9 H 0.115 0.885
10 C -0.162 4.162
11 C -0.023 4.023
12 N -0.362 5.362
13 C 0.335 3.665
14 O -0.392 6.392
15 C -0.268 4.268
16 S 0.084 5.916
17 C -0.669 4.669
18 H 0.106 0.894
19 C -0.113 4.113
20 N -0.517 5.517
21 Si 0.681 3.319
22 H -0.192 1.192
23 H -0.199 1.199
24 H -0.159 1.159
25 C -0.014 4.014
26 O 0.032 5.968
27 N -0.068 5.068
28 H 0.100 0.900
29 H 0.094 0.906
30 H 0.100 0.900
31 H 0.189 0.811
32 H 0.075 0.925
33 H 0.125 0.875
34 H 0.170 0.830
35 H 0.058 0.942
36 H 0.101 0.899
37 H 0.096 0.904
38 H 0.104 0.896
39 H 0.089 0.911
40 H 0.089 0.911
41 H 0.114 0.886
42 H 0.115 0.885
43 H 0.081 0.919
44 H 0.097 0.903
45 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -17.399 4.762 -27.579 32.954
hybrid contribution 1.177 0.833 0.044 1.443
sum -16.221 5.596 -27.534 32.444
Atomic orbital electron populations
1.20175 0.85893 1.03723 1.03568 1.23663 0.99169 0.88876 1.02973
1.22415 0.91015 1.01111 1.08605 1.24320 0.98289 0.83650 1.03302
1.20316 0.89028 0.98102 0.91376 1.60496 1.32461 1.27195 1.11899
1.21924 0.89041 0.98849 0.95842 1.22421 0.97739 0.96434 0.95456
0.88534 1.22659 0.95905 1.00858 0.96797 1.22024 0.97684 0.85928
0.96687 1.48431 1.44613 1.23978 1.19153 1.19994 0.82492 0.83443
0.80581 1.90710 1.48753 1.22860 1.76884 1.23253 1.00660 1.04491
0.98380 1.84801 1.58440 1.32352 1.16036 1.22307 1.26917 1.11796
1.05840 0.89392 1.24709 0.93957 0.97524 0.95090 1.69939 1.31030
1.39149 1.11551 0.86736 0.82534 0.83743 0.78865 1.19198 1.19924
1.15910 1.22217 0.94160 0.96187 0.88806 1.84828 1.21728 1.22811
1.67406 1.73873 0.89268 1.24152 1.19495 0.90023 0.90583 0.89987
0.81055 0.92467 0.87512 0.83031 0.94177 0.89910 0.90397 0.89650
0.91052 0.91077 0.88610 0.88539 0.91946 0.90251 0.91989
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.43 10.47 36.01 0.38 -0.05 16
2 C 0.01 0.10 7.33 -82.10 -0.60 -0.50 16
3 C -0.21 -1.54 11.06 -39.38 -0.44 -1.97 16
4 C -0.03 -0.24 7.00 -35.30 -0.25 -0.49 16
5 C 0.14 0.71 6.25 -4.98 -0.03 0.68 16
6 N -0.69 -4.29 6.49 -115.06 -0.75 -5.04 16
7 C 0.07 0.37 5.19 -3.82 -0.02 0.35 16
8 C -0.10 -0.72 3.29 -88.47 -0.29 -1.01 16
9 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16
10 C -0.12 -0.78 6.42 -24.90 -0.16 -0.94 16
11 C 0.10 0.98 6.49 -3.06 -0.02 0.96 16
12 N -0.62 -8.50 3.33 -170.53 -0.57 -9.07 16
13 C 0.55 10.19 7.87 -10.99 -0.09 10.10 16
14 O -0.52 -11.62 16.12 5.56 0.09 -11.53 16
15 C -0.12 -2.34 5.35 36.00 0.19 -2.14 16
16 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16
17 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16
18 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16
19 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16
20 N -0.88 -26.61 13.97 55.49 0.78 -25.83 16
21 Si 0.86 21.96 27.74 -169.99 -4.72 17.25 16
22 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16
23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16
24 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16
25 C 0.11 1.18 5.60 -2.53 -0.01 1.16 16
26 O 0.10 1.02 11.20 17.17 0.19 1.21 16
27 N -0.36 -4.08 12.07 33.42 0.40 -3.67 16
28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16
31 H 0.17 0.84 8.06 -52.49 -0.42 0.41 16
32 H 0.06 0.24 8.14 -51.94 -0.42 -0.18 16
33 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16
34 H 0.35 2.57 7.89 -39.29 -0.31 2.26 16
35 H 0.04 0.19 8.10 -51.93 -0.42 -0.23 16
36 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16
37 H 0.08 0.42 8.04 -51.93 -0.42 0.00 16
38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16
39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
41 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16
42 H 0.10 1.80 8.14 -51.91 -0.42 1.37 16
43 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16
44 H 0.08 0.98 7.94 -51.93 -0.41 0.57 16
45 H 0.06 0.64 8.00 -51.93 -0.42 0.22 16
LS Contribution 390.34 15.07 5.88 5.88
Total: -1.00 -36.11 390.34 -8.85 -44.96
By element:
Atomic # 1 Polarization: 4.49 SS G_CDS: -7.05 Total: -2.56 kcal
Atomic # 6 Polarization: -4.80 SS G_CDS: -1.12 Total: -5.92 kcal
Atomic # 7 Polarization: -43.48 SS G_CDS: -0.14 Total: -43.62 kcal
Atomic # 8 Polarization: -10.60 SS G_CDS: 0.28 Total: -10.32 kcal
Atomic # 14 Polarization: 21.96 SS G_CDS: -4.72 Total: 17.25 kcal
Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -36.11 -8.85 -44.96 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714337527.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.370 kcal
(2) G-P(sol) polarization free energy of solvation -36.109 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.261 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.961 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.409 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds