Wall clock time and date at job start Tue Mar 31 2020 22:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.33818 * 122.44577 * 2 1 4 4 S 1.70612 * 110.95235 * 179.74744 * 3 2 1 5 5 C 1.75833 * 91.56416 * 0.35372 * 4 3 2 6 6 C 1.46584 * 125.45940 * 179.97438 * 5 4 3 7 7 O 1.21702 * 119.99737 * 187.82828 * 6 5 4 8 8 N 1.34776 * 119.99987 * 7.82086 * 6 5 4 9 9 C 1.46501 * 119.99938 * 359.12001 * 8 6 5 10 10 C 1.46498 * 119.99708 * 179.11240 * 8 6 5 11 11 H 1.08996 * 109.47258 * 0.02562 * 10 8 6 12 12 C 1.52999 * 109.46871 * 120.00805 * 10 8 6 13 13 C 1.53007 * 109.47262 * 240.00084 * 10 8 6 14 14 N 1.46900 * 109.46809 * 55.00264 * 13 10 8 15 15 C 1.46897 * 110.99879 * 180.02562 * 14 13 10 16 16 C 1.50703 * 109.47082 * 180.02562 * 15 14 13 17 17 O 1.21294 * 119.99891 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00014 * 180.02562 * 16 15 14 19 19 C 1.37094 * 119.99997 * 179.97438 * 18 16 15 20 20 H 1.08005 * 120.00008 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99908 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99640 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00305 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47157 * 89.99870 * 23 21 19 25 25 H 1.48496 * 109.47447 * 210.00169 * 23 21 19 26 26 H 1.48503 * 109.46873 * 330.00190 * 23 21 19 27 27 C 1.36646 * 109.08127 * 359.64800 * 5 4 3 28 28 H 1.09001 * 109.46882 * 269.97564 * 1 2 3 29 29 H 1.08995 * 109.47296 * 29.98006 * 1 2 3 30 30 H 1.09007 * 109.46697 * 149.97836 * 1 2 3 31 31 H 1.08005 * 124.52328 * 0.05587 * 3 2 1 32 32 H 1.09004 * 109.46773 * 276.38536 * 9 8 6 33 33 H 1.08997 * 109.47323 * 36.38844 * 9 8 6 34 34 H 1.08998 * 109.47157 * 156.39214 * 9 8 6 35 35 H 1.09008 * 109.46766 * 299.99645 * 12 10 8 36 36 H 1.08996 * 109.47493 * 59.99760 * 12 10 8 37 37 H 1.08994 * 109.47294 * 180.02562 * 12 10 8 38 38 H 1.08999 * 109.47209 * 295.00817 * 13 10 8 39 39 H 1.08995 * 109.47350 * 175.00139 * 13 10 8 40 40 H 1.00905 * 111.00423 * 303.95276 * 14 13 10 41 41 H 1.09001 * 109.47348 * 300.00150 * 15 14 13 42 42 H 1.09003 * 109.47440 * 60.00072 * 15 14 13 43 43 H 0.97001 * 119.99866 * 359.97438 * 18 16 15 44 44 H 0.97001 * 119.99445 * 180.02562 * 22 21 19 45 45 H 1.08003 * 123.35211 * 180.28569 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 16 3.8969 0.7893 0.0070 5 6 3.5938 -0.9426 -0.0009 6 6 4.6232 -1.9861 -0.0001 7 8 4.3079 -3.1521 -0.1495 8 7 5.9189 -1.6544 0.1658 9 6 6.3005 -0.2490 0.3261 10 6 6.9457 -2.6991 0.1860 11 1 6.4755 -3.6733 0.0526 12 6 7.9436 -2.4553 -0.9479 13 6 7.6805 -2.6663 1.5276 14 7 6.7071 -2.7805 2.6219 15 6 7.3779 -2.7520 3.9284 16 6 6.3498 -2.8718 5.0237 17 8 5.1739 -2.9708 4.7435 18 7 6.7370 -2.8680 6.3147 19 6 5.8017 -2.9765 7.3111 20 1 4.7545 -3.0646 7.0616 21 6 6.2008 -2.9720 8.6421 22 7 5.3042 -3.0765 9.5972 23 14 8.0117 -2.8189 9.0737 24 1 8.3659 -1.3843 9.2210 25 1 8.2780 -3.5282 10.3508 26 1 8.8311 -3.4224 7.9921 27 6 2.2447 -1.1600 -0.0004 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8899 -0.5142 31 1 1.8025 2.1233 0.0009 32 1 6.3929 0.2165 -0.6552 33 1 5.5370 0.2710 0.9046 34 1 7.2555 -0.1891 0.8480 35 1 7.4201 -2.4787 -1.9038 36 1 8.4138 -1.4811 -0.8150 37 1 8.7073 -3.2329 -0.9333 38 1 8.2238 -1.7260 1.6215 39 1 8.3828 -3.4983 1.5778 40 1 6.0064 -2.0571 2.5597 41 1 8.0785 -3.5844 3.9954 42 1 7.9189 -1.8121 4.0386 43 1 7.6774 -2.7885 6.5388 44 1 5.5828 -3.0730 10.5263 45 1 1.8020 -2.1452 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714598213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:05 Heat of formation + Delta-G solvation = -22.692247 kcal Electronic energy + Delta-G solvation = -27160.245916 eV Core-core repulsion = 23305.104991 eV Total energy + Delta-G solvation = -3855.140924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.25458 -38.54481 -38.21966 -36.78909 -34.74773 -33.83843 -32.33090 -31.62097 -30.67574 -27.96071 -27.75698 -27.30853 -25.20937 -24.63124 -23.07208 -21.39992 -19.68451 -19.30867 -19.17601 -18.32045 -18.11106 -16.67775 -16.45577 -15.96525 -15.76182 -15.28721 -15.00209 -14.78053 -14.34682 -14.07754 -13.93244 -13.82582 -13.38720 -13.29540 -13.24751 -13.13741 -13.03974 -12.70717 -12.48343 -12.26739 -12.18238 -12.10234 -12.03880 -11.89008 -11.75139 -11.53615 -11.18712 -11.02793 -10.68315 -10.58561 -9.99053 -9.95624 -9.55183 -9.09291 -8.80976 -8.53031 -8.42944 -8.17016 -8.09578 -6.28922 -3.80177 0.43582 1.37442 1.80752 2.27429 2.73506 3.03575 3.06934 3.15515 3.18365 3.76817 4.03541 4.11852 4.38897 4.67257 4.77129 4.81147 4.83677 4.96932 5.00802 5.05656 5.16007 5.19765 5.23516 5.27785 5.35242 5.43650 5.44999 5.48101 5.55906 5.62729 5.73242 5.78806 5.80891 5.84123 5.93943 6.00784 6.19919 6.30736 6.38435 7.10450 7.16722 7.57816 7.60955 8.07433 8.17109 8.62458 8.97603 9.44726 9.85849 10.84359 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.003033 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.393440 B = 9230.104515 C =10792.928402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.117 4.117 3 C -0.263 4.263 4 S 0.214 5.786 5 C -0.263 4.263 6 C 0.595 3.405 7 O -0.517 6.517 8 N -0.608 5.608 9 C 0.059 3.941 10 C 0.139 3.861 11 H 0.114 0.886 12 C -0.158 4.158 13 C 0.049 3.951 14 N -0.664 5.664 15 C 0.048 3.952 16 C 0.449 3.551 17 O -0.561 6.561 18 N -0.592 5.592 19 C -0.304 4.304 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.269 1.269 27 C -0.047 4.047 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.162 0.838 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.029 0.971 39 H 0.085 0.915 40 H 0.349 0.651 41 H 0.088 0.912 42 H 0.042 0.958 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.131 10.687 -23.305 25.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.129 4.129 3 C -0.399 4.399 4 S 0.484 5.516 5 C -0.383 4.383 6 C 0.383 3.617 7 O -0.393 6.393 8 N -0.342 5.342 9 C -0.086 4.086 10 C 0.036 3.964 11 H 0.132 0.868 12 C -0.217 4.217 13 C -0.082 4.082 14 N -0.297 5.297 15 C -0.085 4.085 16 C 0.235 3.765 17 O -0.442 6.442 18 N -0.231 5.231 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.707 3.293 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.080 4.080 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.180 0.820 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.103 0.897 40 H 0.170 0.830 41 H 0.106 0.894 42 H 0.060 0.940 43 H 0.203 0.797 44 H 0.083 0.917 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.363 10.228 -23.359 25.871 hybrid contribution 0.336 0.454 0.841 1.012 sum 4.699 10.682 -22.519 25.363 Atomic orbital electron populations 1.20533 0.89712 1.02601 1.02593 1.18763 0.97856 0.91576 1.04730 1.25698 1.01859 1.03040 1.09347 1.83368 1.01753 0.98395 1.68073 1.24516 0.97993 0.96839 1.18911 1.16924 0.81193 0.87277 0.76281 1.90839 1.80770 1.18607 1.49111 1.47638 1.06338 1.07211 1.72977 1.22026 1.02219 0.81918 1.02444 1.21217 0.88092 0.93023 0.94021 0.86808 1.22108 0.99022 1.02315 0.98254 1.22366 0.94549 1.00500 0.90763 1.59975 1.14080 1.55504 1.00133 1.21720 0.96308 1.00821 0.89616 1.19722 0.89671 0.84073 0.83062 1.90590 1.18179 1.53107 1.82308 1.42199 1.08470 1.66833 1.05635 1.19438 0.92053 1.47434 0.84338 0.86322 1.25037 0.98060 0.97735 0.95370 1.69629 1.33229 1.49319 1.00052 0.86664 0.84859 0.78859 0.78956 1.19716 1.20186 1.19482 1.20662 0.91117 1.00024 0.96234 0.91002 0.91717 0.91356 0.82043 0.91387 0.90505 0.89239 0.91957 0.92348 0.90990 0.95287 0.89656 0.83038 0.89398 0.93965 0.79746 0.91654 0.82962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.13 36.01 0.36 -0.46 16 2 C -0.12 -1.28 5.78 -106.45 -0.62 -1.90 16 3 C -0.26 -2.56 10.67 29.18 0.31 -2.25 16 4 S 0.21 2.01 17.90 -107.50 -1.92 0.09 16 5 C -0.26 -3.45 6.25 -36.79 -0.23 -3.68 16 6 C 0.60 8.87 7.64 -12.90 -0.10 8.77 16 7 O -0.52 -9.60 16.18 5.19 0.08 -9.51 16 8 N -0.61 -7.13 1.83 -175.51 -0.32 -7.45 16 9 C 0.06 0.50 7.94 59.85 0.48 0.97 16 10 C 0.14 1.56 2.94 -67.93 -0.20 1.36 16 11 H 0.11 1.59 6.90 -51.93 -0.36 1.23 16 12 C -0.16 -1.22 9.19 37.16 0.34 -0.88 16 13 C 0.05 0.56 5.00 -3.82 -0.02 0.54 16 14 N -0.66 -10.91 6.12 -115.06 -0.70 -11.62 16 15 C 0.05 0.82 6.17 -4.98 -0.03 0.79 16 16 C 0.45 10.54 7.82 -10.98 -0.09 10.45 16 17 O -0.56 -15.76 15.78 5.55 0.09 -15.67 16 18 N -0.59 -14.38 5.09 -10.96 -0.06 -14.43 16 19 C -0.30 -8.77 10.16 -14.93 -0.15 -8.92 16 20 H 0.12 3.93 7.39 -52.48 -0.39 3.54 16 21 C 0.04 1.13 5.50 -17.46 -0.10 1.04 16 22 N -0.88 -26.11 13.96 55.50 0.77 -25.33 16 23 Si 0.88 19.53 27.74 -169.99 -4.71 14.82 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 27 C -0.05 -0.61 9.81 -40.44 -0.40 -1.01 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 30 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 32 H 0.07 0.43 7.83 -51.93 -0.41 0.03 16 33 H 0.08 0.70 4.47 -22.28 -0.10 0.60 16 34 H 0.09 0.63 6.54 -51.93 -0.34 0.29 16 35 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 36 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.03 0.28 6.87 -51.93 -0.36 -0.08 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.35 6.22 7.56 -39.29 -0.30 5.92 16 41 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.37 7.84 5.76 -40.82 -0.24 7.60 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.15 2.01 8.06 -52.48 -0.42 1.58 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -36.52 380.83 -7.74 -44.26 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -6.27 Total: 14.29 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -0.43 Total: 4.82 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.31 Total: -58.83 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: 0.17 Total: -25.18 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.71 Total: 14.82 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.92 Total: 0.09 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.52 -7.74 -44.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714598213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.567 kcal (2) G-P(sol) polarization free energy of solvation -36.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds