Wall clock time and date at job start Tue Mar 31 2020 22:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.33818 * 122.44577 * 2 1 4 4 S 1.70612 * 110.95235 * 179.74744 * 3 2 1 5 5 C 1.75833 * 91.56416 * 0.35372 * 4 3 2 6 6 C 1.46584 * 125.45940 * 179.97438 * 5 4 3 7 7 O 1.21702 * 119.99737 * 187.82828 * 6 5 4 8 8 N 1.34776 * 119.99987 * 7.82086 * 6 5 4 9 9 C 1.46501 * 119.99938 * 359.12001 * 8 6 5 10 10 C 1.46498 * 119.99708 * 179.11240 * 8 6 5 11 11 H 1.08996 * 109.47258 * 0.02562 * 10 8 6 12 12 C 1.52999 * 109.46871 * 120.00805 * 10 8 6 13 13 C 1.53007 * 109.47262 * 240.00084 * 10 8 6 14 14 N 1.46900 * 109.46809 * 55.00264 * 13 10 8 15 15 C 1.46897 * 110.99879 * 180.02562 * 14 13 10 16 16 C 1.50703 * 109.47082 * 180.02562 * 15 14 13 17 17 O 1.21294 * 119.99891 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00014 * 180.02562 * 16 15 14 19 19 C 1.37094 * 119.99997 * 179.97438 * 18 16 15 20 20 H 1.08005 * 120.00008 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99908 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99640 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00305 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47157 * 89.99870 * 23 21 19 25 25 H 1.48496 * 109.47447 * 210.00169 * 23 21 19 26 26 H 1.48503 * 109.46873 * 330.00190 * 23 21 19 27 27 C 1.36646 * 109.08127 * 359.64800 * 5 4 3 28 28 H 1.09001 * 109.46882 * 269.97564 * 1 2 3 29 29 H 1.08995 * 109.47296 * 29.98006 * 1 2 3 30 30 H 1.09007 * 109.46697 * 149.97836 * 1 2 3 31 31 H 1.08005 * 124.52328 * 0.05587 * 3 2 1 32 32 H 1.09004 * 109.46773 * 276.38536 * 9 8 6 33 33 H 1.08997 * 109.47323 * 36.38844 * 9 8 6 34 34 H 1.08998 * 109.47157 * 156.39214 * 9 8 6 35 35 H 1.09008 * 109.46766 * 299.99645 * 12 10 8 36 36 H 1.08996 * 109.47493 * 59.99760 * 12 10 8 37 37 H 1.08994 * 109.47294 * 180.02562 * 12 10 8 38 38 H 1.08999 * 109.47209 * 295.00817 * 13 10 8 39 39 H 1.08995 * 109.47350 * 175.00139 * 13 10 8 40 40 H 1.00905 * 111.00423 * 303.95276 * 14 13 10 41 41 H 1.09001 * 109.47348 * 300.00150 * 15 14 13 42 42 H 1.09003 * 109.47440 * 60.00072 * 15 14 13 43 43 H 0.97001 * 119.99866 * 359.97438 * 18 16 15 44 44 H 0.97001 * 119.99445 * 180.02562 * 22 21 19 45 45 H 1.08003 * 123.35211 * 180.28569 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 16 3.8969 0.7893 0.0070 5 6 3.5938 -0.9426 -0.0009 6 6 4.6232 -1.9861 -0.0001 7 8 4.3079 -3.1521 -0.1495 8 7 5.9189 -1.6544 0.1658 9 6 6.3005 -0.2490 0.3261 10 6 6.9457 -2.6991 0.1860 11 1 6.4755 -3.6733 0.0526 12 6 7.9436 -2.4553 -0.9479 13 6 7.6805 -2.6663 1.5276 14 7 6.7071 -2.7805 2.6219 15 6 7.3779 -2.7520 3.9284 16 6 6.3498 -2.8718 5.0237 17 8 5.1739 -2.9708 4.7435 18 7 6.7370 -2.8680 6.3147 19 6 5.8017 -2.9765 7.3111 20 1 4.7545 -3.0646 7.0616 21 6 6.2008 -2.9720 8.6421 22 7 5.3042 -3.0765 9.5972 23 14 8.0117 -2.8189 9.0737 24 1 8.3659 -1.3843 9.2210 25 1 8.2780 -3.5282 10.3508 26 1 8.8311 -3.4224 7.9921 27 6 2.2447 -1.1600 -0.0004 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8899 -0.5142 31 1 1.8025 2.1233 0.0009 32 1 6.3929 0.2165 -0.6552 33 1 5.5370 0.2710 0.9046 34 1 7.2555 -0.1891 0.8480 35 1 7.4201 -2.4787 -1.9038 36 1 8.4138 -1.4811 -0.8150 37 1 8.7073 -3.2329 -0.9333 38 1 8.2238 -1.7260 1.6215 39 1 8.3828 -3.4983 1.5778 40 1 6.0064 -2.0571 2.5597 41 1 8.0785 -3.5844 3.9954 42 1 7.9189 -1.8121 4.0386 43 1 7.6774 -2.7885 6.5388 44 1 5.5828 -3.0730 10.5263 45 1 1.8020 -2.1452 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714598213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:04 Heat of formation + Delta-G solvation = -51.073591 kcal Electronic energy + Delta-G solvation = -27161.476623 eV Core-core repulsion = 23305.104991 eV Total energy + Delta-G solvation = -3856.371632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.26137 -40.29451 -39.17662 -37.90305 -36.21300 -35.61273 -33.77843 -33.24545 -31.49899 -29.12418 -28.71296 -28.09433 -26.65362 -25.74849 -24.43208 -22.28654 -21.32644 -20.57941 -20.19618 -20.07231 -19.00791 -17.93111 -17.63275 -17.24975 -16.83908 -16.67127 -16.44775 -15.83165 -15.71520 -15.45372 -15.00986 -14.78782 -14.72671 -14.47235 -14.24962 -14.16193 -14.08673 -14.04178 -13.81004 -13.27964 -13.14012 -13.04296 -13.01195 -12.89939 -12.80407 -12.75651 -12.47519 -12.41563 -11.98969 -11.89416 -11.52737 -11.47020 -11.09943 -10.49156 -10.26756 -10.03569 -9.63659 -9.28165 -9.21291 -8.42478 -6.04126 -0.48355 0.51570 0.99782 1.29705 1.35267 1.35660 1.44856 1.84418 1.94012 2.15838 2.22686 2.70697 3.13706 3.33444 3.52081 3.91288 3.99786 4.06985 4.12145 4.14842 4.21978 4.29047 4.40352 4.41025 4.47467 4.52794 4.62877 4.67420 4.70404 4.79025 4.80028 4.81839 4.88651 5.01568 5.11740 5.28695 5.39272 5.47490 5.51105 5.54166 5.88878 6.05387 6.20428 6.32744 6.58605 6.86627 7.03815 7.37815 7.95836 8.75528 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.003033 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.393440 B = 9230.104515 C =10792.928402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.137 4.137 3 C -0.264 4.264 4 S 0.293 5.707 5 C -0.303 4.303 6 C 0.583 3.417 7 O -0.575 6.575 8 N -0.601 5.601 9 C 0.050 3.950 10 C 0.136 3.864 11 H 0.074 0.926 12 C -0.147 4.147 13 C 0.052 3.948 14 N -0.694 5.694 15 C 0.064 3.936 16 C 0.444 3.556 17 O -0.619 6.619 18 N -0.588 5.588 19 C -0.332 4.332 20 H 0.050 0.950 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.969 3.031 24 H -0.253 1.253 25 H -0.276 1.276 26 H -0.230 1.230 27 C -0.070 4.070 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.191 0.809 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.337 0.663 41 H 0.116 0.884 42 H 0.084 0.916 43 H 0.391 0.609 44 H 0.280 0.720 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.974 13.523 -24.228 29.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.148 4.148 3 C -0.400 4.400 4 S 0.563 5.437 5 C -0.423 4.423 6 C 0.372 3.628 7 O -0.457 6.457 8 N -0.333 5.333 9 C -0.094 4.094 10 C 0.033 3.967 11 H 0.092 0.908 12 C -0.205 4.205 13 C -0.077 4.077 14 N -0.327 5.327 15 C -0.068 4.068 16 C 0.232 3.768 17 O -0.503 6.503 18 N -0.230 5.230 19 C -0.461 4.461 20 H 0.068 0.932 21 C -0.215 4.215 22 N -0.576 5.576 23 Si 0.788 3.212 24 H -0.178 1.178 25 H -0.201 1.201 26 H -0.153 1.153 27 C -0.105 4.105 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.209 0.791 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.133 0.867 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.156 0.844 41 H 0.134 0.866 42 H 0.102 0.898 43 H 0.227 0.773 44 H 0.089 0.911 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.270 13.099 -24.310 29.129 hybrid contribution -1.276 -0.393 1.102 1.731 sum 7.994 12.706 -23.208 27.640 Atomic orbital electron populations 1.20565 0.88399 1.03654 1.02684 1.18915 0.99041 0.91192 1.05696 1.26185 1.02597 1.03892 1.07367 1.82891 1.00785 0.94063 1.65942 1.24636 0.97689 0.99490 1.20437 1.17339 0.82596 0.86968 0.75855 1.90787 1.81866 1.20909 1.52130 1.47742 1.05350 1.08912 1.71310 1.22336 1.02982 0.79797 1.04277 1.21281 0.88366 0.91368 0.95699 0.90792 1.22030 0.98152 1.04258 0.96059 1.22491 0.93699 1.02917 0.88588 1.59949 1.15623 1.55890 1.01253 1.21653 0.94105 1.04005 0.87071 1.21117 0.90386 0.81268 0.84029 1.90573 1.21483 1.54940 1.83326 1.41996 1.08610 1.67241 1.05169 1.18991 0.90414 1.50097 0.86573 0.93213 1.26180 1.05152 0.95955 0.94172 1.69821 1.36901 1.49984 1.00880 0.85312 0.76333 0.79998 0.79512 1.17774 1.20071 1.15334 1.20759 0.91917 1.00215 0.97561 0.91340 0.89583 0.91434 0.79136 0.88643 0.91260 0.86719 0.92725 0.89800 0.89455 0.91734 0.88079 0.84417 0.86591 0.89782 0.77316 0.91097 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.66 10.13 71.24 0.72 -0.93 16 2 C -0.14 -3.08 5.78 -21.05 -0.12 -3.20 16 3 C -0.26 -4.73 10.67 66.81 0.71 -4.02 16 4 S 0.29 4.99 17.90 -56.49 -1.01 3.98 16 5 C -0.30 -8.36 6.25 24.08 0.15 -8.21 16 6 C 0.58 18.49 7.64 86.42 0.66 19.15 16 7 O -0.58 -23.68 16.18 -4.35 -0.07 -23.75 16 8 N -0.60 -13.71 1.83 -827.41 -1.52 -15.23 16 9 C 0.05 0.68 7.94 127.77 1.02 1.70 16 10 C 0.14 2.87 2.94 44.99 0.13 3.00 16 11 H 0.07 2.18 6.90 -2.39 -0.02 2.16 16 12 C -0.15 -1.82 9.19 71.98 0.66 -1.16 16 13 C 0.05 1.02 5.00 86.31 0.43 1.45 16 14 N -0.69 -21.86 6.12 -517.92 -3.17 -25.03 16 15 C 0.06 1.96 6.17 85.56 0.53 2.49 16 16 C 0.44 20.86 7.82 87.66 0.69 21.54 16 17 O -0.62 -36.63 15.78 -3.07 -0.05 -36.68 16 18 N -0.59 -28.31 5.09 -306.98 -1.56 -29.87 16 19 C -0.33 -19.93 10.16 84.04 0.85 -19.08 16 20 H 0.05 3.60 7.39 -2.91 -0.02 3.57 16 21 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 22 N -0.94 -57.28 13.96 21.66 0.30 -56.98 16 23 Si 0.97 38.80 27.74 68.60 1.90 40.70 16 24 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 25 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 26 H -0.23 -7.71 6.52 99.48 0.65 -7.06 16 27 C -0.07 -2.00 9.81 21.72 0.21 -1.79 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.10 8.12 -2.39 -0.02 1.09 16 30 H 0.07 1.16 8.13 -2.38 -0.02 1.14 16 31 H 0.19 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.10 0.83 7.83 -2.38 -0.02 0.81 16 33 H 0.07 1.08 4.47 -21.24 -0.10 0.99 16 34 H 0.11 1.03 6.54 -2.39 -0.02 1.01 16 35 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.08 0.64 7.67 -2.39 -0.02 0.62 16 37 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.06 0.86 6.87 -2.39 -0.02 0.84 16 39 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.34 11.93 7.56 -89.69 -0.68 11.25 16 41 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 42 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.39 15.28 5.76 -92.71 -0.53 14.74 16 44 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 45 H 0.13 4.09 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -91.38 380.83 1.61 -89.76 By element: Atomic # 1 Polarization: 42.89 SS G_CDS: -0.32 Total: 42.57 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 7.11 Total: 10.52 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -5.95 Total: -127.10 kcal Atomic # 8 Polarization: -60.31 SS G_CDS: -0.12 Total: -60.43 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 1.90 Total: 40.70 kcal Atomic # 16 Polarization: 4.99 SS G_CDS: -1.01 Total: 3.98 kcal Total: -91.38 1.61 -89.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714598213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.687 kcal (2) G-P(sol) polarization free energy of solvation -91.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds