Wall clock time and date at job start Tue Mar 31 2020 22:46:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 N 1.34473 * 126.16749 * 2 1
4 4 C 1.30254 * 108.70205 * 180.26532 * 3 2 1
5 5 O 1.33963 * 108.76011 * 0.02562 * 4 3 2
6 6 C 1.34334 * 126.16435 * 180.31318 * 2 1 3
7 7 C 1.50700 * 126.44385 * 359.75651 * 6 2 1
8 8 N 1.46896 * 109.46997 * 89.99892 * 7 6 2
9 9 C 1.48536 * 111.00180 * 52.60694 * 8 7 6
10 10 C 1.54931 * 103.22625 * 159.71631 * 9 8 7
11 11 C 1.54587 * 102.92655 * 322.58507 * 10 9 8
12 12 H 1.09004 * 110.31100 * 263.04027 * 11 10 9
13 13 C 1.52999 * 110.31208 * 140.87430 * 11 10 9
14 14 N 1.46501 * 109.47198 * 69.28224 * 13 11 10
15 15 C 1.34777 * 119.99770 * 179.97438 * 14 13 11
16 16 O 1.21279 * 120.00144 * 0.02562 * 15 14 13
17 17 C 1.50706 * 119.99687 * 180.02562 * 15 14 13
18 18 S 1.80998 * 109.47102 * 180.02562 * 17 15 14
19 19 C 1.76194 * 100.00047 * 179.97438 * 18 17 15
20 20 H 1.08004 * 119.99823 * 0.02562 * 19 18 17
21 21 C 1.38797 * 120.00118 * 179.97438 * 19 18 17
22 22 N 1.31625 * 120.00108 * 0.02562 * 21 19 18
23 23 Si 1.86799 * 119.99824 * 179.97438 * 21 19 18
24 24 H 1.48495 * 109.47392 * 60.00551 * 23 21 19
25 25 H 1.48508 * 109.46805 * 180.02562 * 23 21 19
26 26 H 1.48501 * 109.47531 * 300.00114 * 23 21 19
27 27 C 1.47908 * 110.99846 * 170.00054 * 8 7 6
28 28 H 1.09005 * 109.46824 * 269.68791 * 1 2 3
29 29 H 1.08994 * 109.47321 * 29.68888 * 1 2 3
30 30 H 1.09001 * 109.47319 * 149.69484 * 1 2 3
31 31 H 1.08004 * 125.61569 * 179.97438 * 4 3 2
32 32 H 1.09002 * 109.47045 * 210.00455 * 7 6 2
33 33 H 1.09002 * 109.47106 * 329.99587 * 7 6 2
34 34 H 1.08992 * 110.66145 * 278.15371 * 9 8 7
35 35 H 1.08998 * 110.66307 * 41.27897 * 9 8 7
36 36 H 1.09008 * 110.72253 * 204.22340 * 10 9 8
37 37 H 1.09007 * 110.72173 * 80.94817 * 10 9 8
38 38 H 1.09004 * 109.47229 * 189.28762 * 13 11 10
39 39 H 1.09001 * 109.47353 * 309.28357 * 13 11 10
40 40 H 0.96994 * 120.00084 * 0.02562 * 14 13 11
41 41 H 1.09002 * 109.46419 * 300.00033 * 17 15 14
42 42 H 1.09001 * 109.47259 * 59.99553 * 17 15 14
43 43 H 0.97001 * 120.00194 * 179.97438 * 22 21 19
44 44 H 1.09007 * 109.91652 * 333.51165 * 27 8 7
45 45 H 1.08997 * 109.91586 * 94.80016 * 27 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3006 1.0856 0.0000
4 6 3.5431 0.6947 -0.0057
5 8 3.5734 -0.6446 -0.0101
6 6 2.2998 -1.0845 -0.0059
7 6 1.8493 -2.5226 -0.0086
8 7 1.6982 -2.9857 -1.3945
9 6 2.9311 -2.7244 -2.1805
10 6 2.8051 -3.7044 -3.3739
11 6 2.1759 -4.9590 -2.7260
12 1 2.9500 -5.6853 -2.4780
13 6 1.1438 -5.5823 -3.6680
14 7 1.8279 -6.1666 -4.8242
15 6 1.1148 -6.7755 -5.7922
16 8 -0.0933 -6.8393 -5.7064
17 6 1.8186 -7.3771 -6.9813
18 16 0.5976 -8.1142 -8.0957
19 6 1.6645 -8.7230 -9.3589
20 1 2.7321 -8.5801 -9.2793
21 6 1.1331 -9.3871 -10.4557
22 7 -0.1680 -9.5617 -10.5525
23 14 2.2642 -10.0318 -11.7953
24 1 3.2165 -11.0098 -11.2107
25 1 1.4553 -10.6967 -12.8485
26 1 3.0197 -8.9012 -12.3920
27 6 1.4908 -4.4494 -1.4445
28 1 -0.3633 -0.0056 1.0277
29 1 -0.3633 0.8927 -0.5090
30 1 -0.3634 -0.8872 -0.5186
31 1 4.4066 1.3434 -0.0076
32 1 2.5918 -3.1368 0.5009
33 1 0.8932 -2.6049 0.5083
34 1 2.9524 -1.6925 -2.5307
35 1 3.8189 -2.9497 -1.5897
36 1 3.7863 -3.9353 -3.7887
37 1 2.1474 -3.2954 -4.1410
38 1 0.5932 -6.3608 -3.1398
39 1 0.4500 -4.8130 -4.0070
40 1 2.7941 -6.1159 -4.8926
41 1 2.3690 -6.5987 -7.5097
42 1 2.5125 -8.1462 -6.6420
43 1 -0.5394 -10.0255 -11.3192
44 1 1.9423 -4.9185 -0.5703
45 1 0.4245 -4.6723 -1.4796
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001714623028.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:46:24
Heat of formation + Delta-G solvation = -42.036491 kcal
Electronic energy + Delta-G solvation = -25900.294914 eV
Core-core repulsion = 22044.315160 eV
Total energy + Delta-G solvation = -3855.979754 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-44.32552 -40.84656 -39.89760 -36.34916 -36.10848 -34.57831 -34.15883 -32.16975
-31.06811 -30.09402 -28.89771 -27.67519 -26.56919 -25.32949 -23.22122 -22.67088
-21.78520 -21.36376 -21.18585 -19.78653 -18.14990 -17.89142 -17.72527 -17.56518
-16.87087 -16.80925 -16.52862 -16.33390 -15.91260 -15.63286 -15.29495 -14.97507
-14.65995 -14.64574 -14.42193 -14.14284 -13.92145 -13.71577 -13.53482 -13.16565
-13.15811 -13.05017 -12.85766 -12.80739 -12.66168 -12.52905 -12.21105 -12.02133
-11.92688 -11.73723 -11.61956 -11.48627 -11.12159 -10.93693 -10.26711 -10.08973
-9.78626 -9.38980 -8.65801 -8.33588 -6.11788 0.45020 1.27980 1.44486
1.47822 1.57530 1.63928 1.68058 1.81320 2.27241 2.32312 3.00363
3.01386 3.32016 3.33127 3.52838 3.54541 3.79627 3.82406 3.92251
4.03566 4.15723 4.28984 4.30761 4.37787 4.39980 4.48447 4.52320
4.60781 4.70830 4.75235 4.75305 4.84608 4.84986 4.91145 4.98717
5.03146 5.11900 5.15739 5.23130 5.42316 5.44795 5.46902 5.79751
5.89172 6.20410 6.53128 6.74911 7.07472 7.27326 8.75337
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.028902 B = 0.001641 C = 0.001615
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 968.551795 B =17055.917519 C =17330.277389
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C -0.014 4.014
3 N -0.527 5.527
4 C 0.181 3.819
5 O -0.212 6.212
6 C -0.055 4.055
7 C 0.136 3.864
8 N -0.524 5.524
9 C 0.044 3.956
10 C -0.118 4.118
11 C -0.096 4.096
12 H 0.104 0.896
13 C 0.133 3.867
14 N -0.711 5.711
15 C 0.533 3.467
16 O -0.568 6.568
17 C -0.130 4.130
18 S -0.153 6.153
19 C -0.547 4.547
20 H 0.083 0.917
21 C 0.013 3.987
22 N -0.911 5.911
23 Si 0.998 3.002
24 H -0.261 1.261
25 H -0.279 1.279
26 H -0.262 1.262
27 C 0.045 3.955
28 H 0.085 0.915
29 H 0.067 0.933
30 H 0.087 0.913
31 H 0.289 0.711
32 H 0.067 0.933
33 H 0.123 0.877
34 H 0.062 0.938
35 H 0.054 0.946
36 H 0.091 0.909
37 H 0.063 0.937
38 H 0.062 0.938
39 H 0.054 0.946
40 H 0.416 0.584
41 H 0.109 0.891
42 H 0.111 0.889
43 H 0.271 0.729
44 H 0.073 0.927
45 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.137 17.376 26.105 33.626
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.134 4.134
3 N -0.256 5.256
4 C -0.045 4.045
5 O -0.099 6.099
6 C -0.108 4.108
7 C 0.008 3.992
8 N -0.249 5.249
9 C -0.083 4.083
10 C -0.156 4.156
11 C -0.115 4.115
12 H 0.123 0.877
13 C 0.009 3.991
14 N -0.365 5.365
15 C 0.318 3.682
16 O -0.446 6.446
17 C -0.281 4.281
18 S 0.074 5.926
19 C -0.695 4.695
20 H 0.101 0.899
21 C -0.192 4.192
22 N -0.547 5.547
23 Si 0.820 3.180
24 H -0.186 1.186
25 H -0.204 1.204
26 H -0.187 1.187
27 C -0.082 4.082
28 H 0.103 0.897
29 H 0.086 0.914
30 H 0.106 0.894
31 H 0.304 0.696
32 H 0.085 0.915
33 H 0.141 0.859
34 H 0.080 0.920
35 H 0.073 0.927
36 H 0.109 0.891
37 H 0.082 0.918
38 H 0.081 0.919
39 H 0.072 0.928
40 H 0.253 0.747
41 H 0.127 0.873
42 H 0.129 0.871
43 H 0.080 0.920
44 H 0.091 0.909
45 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 9.377 18.086 25.985 33.019
hybrid contribution 2.900 -1.056 -0.750 3.176
sum 12.276 17.030 25.234 32.825
Atomic orbital electron populations
1.20191 0.85504 1.03793 1.03428 1.21890 0.98992 0.87615 1.04867
1.70384 1.02759 1.32741 1.19759 1.28963 0.98105 0.79218 0.98206
1.84434 1.30227 1.25279 1.69923 1.23149 0.80694 0.98121 1.08855
1.20770 1.02337 0.85141 0.90924 1.64967 1.35013 1.14560 1.10356
1.23108 0.91208 0.99375 0.94636 1.22598 1.01770 0.94123 0.97154
1.22174 0.97344 0.97724 0.94305 0.87741 1.21448 0.95004 0.97037
0.85571 1.45720 1.11229 1.57932 1.21596 1.20056 0.87060 0.77529
0.83517 1.90695 1.16086 1.59207 1.78612 1.23377 1.03064 1.04085
0.97566 1.85590 1.12828 1.72531 1.21647 1.23178 0.95251 1.42892
1.08185 0.89862 1.26133 0.97193 0.95409 1.00457 1.70177 1.12949
1.40703 1.30919 0.85006 0.77673 0.78656 0.76667 1.18604 1.20444
1.18691 1.22887 1.02240 0.86268 0.96850 0.89683 0.91404 0.89433
0.69602 0.91487 0.85865 0.91978 0.92734 0.89091 0.91846 0.91921
0.92781 0.74749 0.87295 0.87115 0.92008 0.90913 0.89387
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.99 10.05 71.24 0.72 -0.27 16
2 C -0.01 -0.25 7.11 41.26 0.29 0.04 16
3 N -0.53 -9.99 11.29 -304.07 -3.43 -13.42 16
4 C 0.18 2.26 13.23 130.48 1.73 3.99 16
5 O -0.21 -3.13 10.57 -3.62 -0.04 -3.17 16
6 C -0.06 -0.85 5.66 24.79 0.14 -0.71 16
7 C 0.14 1.50 5.19 85.56 0.44 1.94 16
8 N -0.52 -7.00 5.39 -887.57 -4.78 -11.79 16
9 C 0.04 0.61 5.42 86.65 0.47 1.08 16
10 C -0.12 -1.56 6.41 31.79 0.20 -1.36 16
11 C -0.10 -1.19 3.03 -9.92 -0.03 -1.22 16
12 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16
13 C 0.13 2.71 4.76 86.38 0.41 3.13 16
14 N -0.71 -16.76 5.43 -463.05 -2.51 -19.27 16
15 C 0.53 19.26 7.85 87.66 0.69 19.95 16
16 O -0.57 -26.25 15.86 -3.03 -0.05 -26.29 16
17 C -0.13 -5.05 6.16 71.24 0.44 -4.61 16
18 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16
19 C -0.55 -31.16 9.50 67.95 0.65 -30.52 16
20 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16
21 C 0.01 0.73 5.49 84.86 0.47 1.20 16
22 N -0.91 -56.04 13.22 21.65 0.29 -55.75 16
23 Si 1.00 43.40 29.55 68.60 2.03 45.43 16
24 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16
25 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16
26 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16
27 C 0.05 0.51 6.36 86.45 0.55 1.05 16
28 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16
29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
30 H 0.09 1.09 7.80 -2.39 -0.02 1.07 16
31 H 0.29 0.48 8.06 -2.91 -0.02 0.45 16
32 H 0.07 0.60 7.81 -2.39 -0.02 0.58 16
33 H 0.12 1.01 7.81 -2.39 -0.02 0.99 16
34 H 0.06 1.06 7.90 -2.39 -0.02 1.04 16
35 H 0.05 0.67 8.02 -2.39 -0.02 0.66 16
36 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16
37 H 0.06 1.11 7.76 -2.38 -0.02 1.09 16
38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16
39 H 0.05 1.33 7.99 -2.39 -0.02 1.31 16
40 H 0.42 6.83 8.41 -92.71 -0.78 6.05 16
41 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16
42 H 0.11 3.83 8.14 -2.39 -0.02 3.82 16
43 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16
44 H 0.07 0.56 7.57 -2.38 -0.02 0.54 16
45 H 0.09 1.07 7.68 -2.39 -0.02 1.05 16
Total: -1.00 -82.66 389.35 -2.28 -84.94
By element:
Atomic # 1 Polarization: 15.08 SS G_CDS: 0.22 Total: 15.30 kcal
Atomic # 6 Polarization: -13.48 SS G_CDS: 7.16 Total: -6.32 kcal
Atomic # 7 Polarization: -89.78 SS G_CDS: -10.44 Total: -100.23 kcal
Atomic # 8 Polarization: -29.38 SS G_CDS: -0.09 Total: -29.47 kcal
Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal
Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal
Total: -82.66 -2.28 -84.94 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714623028.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.903 kcal
(2) G-P(sol) polarization free energy of solvation -82.657 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.754 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.283 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.940 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.036 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds