Wall clock time and date at job start Tue Mar 31 2020 22:13:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50708 * 1
3 3 N 1.30171 * 126.80178 * 2 1
4 4 O 1.20923 * 111.60389 * 179.97438 * 3 2 1
5 5 C 1.34034 * 111.56833 * 0.02562 * 4 3 2
6 6 C 1.35451 * 106.44611 * 359.97438 * 5 4 3
7 7 C 1.50701 * 128.00983 * 180.02562 * 6 5 4
8 8 N 1.46893 * 109.47512 * 259.97550 * 7 6 5
9 9 C 1.47901 * 111.00199 * 69.86570 * 8 7 6
10 10 C 1.53988 * 107.06369 * 214.15851 * 9 8 7
11 11 C 1.54592 * 105.13846 * 1.22937 * 10 9 8
12 12 H 1.09005 * 110.72599 * 263.59490 * 11 10 9
13 13 N 1.46505 * 110.72458 * 140.49303 * 11 10 9
14 14 C 1.46504 * 119.99724 * 301.44941 * 13 11 10
15 15 C 1.34778 * 120.00041 * 121.45407 * 13 11 10
16 16 O 1.21280 * 119.99835 * 359.97438 * 15 13 11
17 17 C 1.50695 * 119.99607 * 179.97438 * 15 13 11
18 18 S 1.81005 * 109.46732 * 179.97438 * 17 15 13
19 19 C 1.76203 * 99.99923 * 180.02562 * 18 17 15
20 20 H 1.08003 * 120.00074 * 0.02562 * 19 18 17
21 21 C 1.38803 * 120.00037 * 179.97438 * 19 18 17
22 22 N 1.31630 * 119.99940 * 359.97438 * 21 19 18
23 23 Si 1.86798 * 119.99971 * 180.02562 * 21 19 18
24 24 H 1.48505 * 109.47132 * 359.97438 * 23 21 19
25 25 H 1.48497 * 109.47381 * 119.99834 * 23 21 19
26 26 H 1.48501 * 109.46699 * 239.99925 * 23 21 19
27 27 C 1.48539 * 110.99622 * 312.47790 * 8 7 6
28 28 H 1.09003 * 109.46685 * 90.01751 * 1 2 3
29 29 H 1.09000 * 109.47092 * 210.01902 * 1 2 3
30 30 H 1.09002 * 109.46993 * 330.02722 * 1 2 3
31 31 H 1.08002 * 126.78139 * 180.02562 * 5 4 3
32 32 H 1.09003 * 109.47190 * 19.97710 * 7 6 5
33 33 H 1.08999 * 109.47449 * 139.96897 * 7 6 5
34 34 H 1.09001 * 109.91844 * 333.52011 * 9 8 7
35 35 H 1.09005 * 109.91153 * 94.80632 * 9 8 7
36 36 H 1.09001 * 110.30667 * 120.14245 * 10 9 8
37 37 H 1.09000 * 110.31346 * 242.30893 * 10 9 8
38 38 H 1.09000 * 109.46797 * 90.00574 * 14 13 11
39 39 H 1.09003 * 109.46825 * 209.99885 * 14 13 11
40 40 H 1.08994 * 109.47432 * 330.00174 * 14 13 11
41 41 H 1.09001 * 109.47317 * 299.99780 * 17 15 13
42 42 H 1.08994 * 109.47492 * 60.00437 * 17 15 13
43 43 H 0.96992 * 119.99863 * 179.97438 * 22 21 19
44 44 H 1.08998 * 110.66662 * 278.14863 * 27 8 7
45 45 H 1.08999 * 110.67292 * 41.28422 * 27 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2869 1.0423 0.0000
4 8 3.4538 0.7253 0.0005
5 6 3.6025 -0.6068 0.0004
6 6 2.3540 -1.1320 0.0003
7 6 1.9591 -2.5864 0.0006
8 7 1.5983 -2.9962 -1.3631
9 6 2.7910 -3.0391 -2.2366
10 6 2.3358 -2.6115 -3.6442
11 6 0.8290 -2.2964 -3.5028
12 1 0.2259 -3.1548 -3.7989
13 7 0.4699 -1.1159 -4.2926
14 6 1.1313 0.1660 -4.0361
15 6 -0.4690 -1.2091 -5.2551
16 8 -1.0162 -2.2703 -5.4676
17 6 -0.8388 0.0054 -6.0670
18 16 -2.1172 -0.4388 -7.2689
19 6 -2.3511 1.1197 -8.0569
20 1 -1.7735 1.9763 -7.7418
21 6 -3.2768 1.2465 -9.0834
22 7 -3.9796 0.2022 -9.4684
23 14 -3.5242 2.8986 -9.9193
24 1 -2.6191 3.9038 -9.3065
25 1 -3.2168 2.7721 -11.3666
26 1 -4.9339 3.3333 -9.7487
27 6 0.6746 -2.0145 -1.9871
28 1 -0.3633 -0.0003 -1.0277
29 1 -0.3633 -0.8898 0.5141
30 1 -0.3633 0.8902 0.5134
31 1 4.5340 -1.1535 0.0011
32 1 2.7958 -3.1900 0.3521
33 1 1.1043 -2.7306 0.6615
34 1 3.5483 -2.3485 -1.8654
35 1 3.1920 -4.0523 -2.2679
36 1 2.8798 -1.7227 -3.9639
37 1 2.4874 -3.4245 -4.3542
38 1 2.0223 0.2460 -4.6587
39 1 0.4478 0.9813 -4.2734
40 1 1.4156 0.2243 -2.9855
41 1 -1.2171 0.7840 -5.4046
42 1 0.0422 0.3726 -6.5933
43 1 -4.6267 0.2909 -10.1855
44 1 -0.3513 -2.1931 -1.6652
45 1 0.9807 -0.9950 -1.7523
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001715014695.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:13:40
Heat of formation + Delta-G solvation = 49.942767 kcal
Electronic energy + Delta-G solvation = -27818.363783 eV
Core-core repulsion = 23966.372549 eV
Total energy + Delta-G solvation = -3851.991234 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-45.37906 -40.32014 -38.71610 -35.80561 -34.83708 -32.90961 -32.43512 -31.08125
-29.84334 -29.21434 -28.02889 -26.94418 -26.01865 -25.45511 -22.71539 -21.91799
-21.11931 -20.71830 -19.12695 -18.09631 -17.87525 -17.73288 -17.02919 -16.43030
-15.79244 -15.39696 -15.04480 -15.02389 -14.80996 -14.61119 -14.28182 -13.90445
-13.52480 -13.44038 -13.32475 -12.99455 -12.88821 -12.81103 -12.62529 -12.35006
-12.32681 -12.04116 -11.83945 -11.69363 -11.51867 -11.32286 -11.07539 -11.02598
-10.77797 -10.73343 -10.24006 -9.93384 -9.80398 -9.38959 -9.07966 -8.88245
-8.56950 -8.23340 -6.50996 -6.22408 -3.93002 1.06616 1.75939 2.81976
2.85565 2.99855 3.21142 3.24407 3.30361 3.53030 3.74789 3.81412
4.07892 4.19497 4.32663 4.38547 4.52064 4.63260 4.80080 4.87637
4.97566 5.00319 5.09256 5.12295 5.12872 5.14756 5.20977 5.26180
5.30762 5.37754 5.39204 5.41899 5.54392 5.56074 5.68282 5.69331
5.76452 5.85808 5.91043 6.00844 6.11514 6.36221 6.56064 6.67911
7.48444 7.59411 7.88523 8.34799 8.51735 9.23096 10.85082
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.018470 B = 0.002624 C = 0.002442
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1515.612017 B =10667.052851 C =11461.527322
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.086 4.086
2 C 0.028 3.972
3 N -0.362 5.362
4 O 0.099 5.901
5 C -0.051 4.051
6 C -0.236 4.236
7 C 0.121 3.879
8 N -0.500 5.500
9 C 0.035 3.965
10 C -0.143 4.143
11 C 0.140 3.860
12 H 0.116 0.884
13 N -0.616 5.616
14 C 0.079 3.921
15 C 0.535 3.465
16 O -0.513 6.513
17 C -0.150 4.150
18 S -0.061 6.061
19 C -0.535 4.535
20 H 0.073 0.927
21 C 0.073 3.927
22 N -0.867 5.867
23 Si 0.918 3.082
24 H -0.272 1.272
25 H -0.280 1.280
26 H -0.280 1.280
27 C 0.007 3.993
28 H 0.087 0.913
29 H 0.083 0.917
30 H 0.077 0.923
31 H 0.214 0.786
32 H 0.090 0.910
33 H 0.093 0.907
34 H 0.046 0.954
35 H 0.084 0.916
36 H 0.071 0.929
37 H 0.079 0.921
38 H 0.054 0.946
39 H 0.078 0.922
40 H 0.061 0.939
41 H 0.089 0.911
42 H 0.089 0.911
43 H 0.268 0.732
44 H 0.089 0.911
45 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.277 -3.633 22.056 28.251
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.132 4.132
3 N -0.067 5.067
4 O 0.034 5.966
5 C -0.133 4.133
6 C -0.241 4.241
7 C -0.008 4.008
8 N -0.222 5.222
9 C -0.093 4.093
10 C -0.182 4.182
11 C 0.035 3.965
12 H 0.134 0.866
13 N -0.351 5.351
14 C -0.064 4.064
15 C 0.324 3.676
16 O -0.387 6.387
17 C -0.300 4.300
18 S 0.166 5.834
19 C -0.683 4.683
20 H 0.091 0.909
21 C -0.136 4.136
22 N -0.502 5.502
23 Si 0.745 3.255
24 H -0.196 1.196
25 H -0.206 1.206
26 H -0.206 1.206
27 C -0.121 4.121
28 H 0.106 0.894
29 H 0.102 0.898
30 H 0.096 0.904
31 H 0.231 0.769
32 H 0.108 0.892
33 H 0.111 0.889
34 H 0.065 0.935
35 H 0.102 0.898
36 H 0.090 0.910
37 H 0.098 0.902
38 H 0.073 0.927
39 H 0.096 0.904
40 H 0.080 0.920
41 H 0.107 0.893
42 H 0.107 0.893
43 H 0.078 0.922
44 H 0.107 0.893
45 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 15.858 -4.482 21.651 27.209
hybrid contribution 1.055 2.355 -0.278 2.596
sum 16.913 -2.127 21.373 27.338
Atomic orbital electron populations
1.20465 0.85768 1.04023 1.04065 1.23546 0.99093 0.88246 1.02311
1.73912 0.89350 1.24060 1.19372 1.84849 1.21650 1.22960 1.67143
1.25890 1.00609 0.83850 1.02994 1.22130 0.92562 0.99538 1.09904
1.20766 1.01940 0.85996 0.92075 1.65078 1.11880 1.44095 1.01145
1.22888 0.92555 1.01618 0.92264 1.22770 0.96289 1.02252 0.96903
1.21854 0.95474 0.89717 0.89465 0.86621 1.47790 1.40853 1.09795
1.36712 1.21719 0.98175 0.85635 1.00882 1.20365 0.77857 0.90369
0.79056 1.90695 1.51506 1.29868 1.66586 1.23560 1.05735 0.98350
1.02400 1.85399 1.44047 1.16194 1.37765 1.22899 1.27001 0.95920
1.22464 0.90914 1.24992 0.94824 0.97751 0.96009 1.70025 1.23156
1.29232 1.27828 0.86120 0.78178 0.82162 0.79058 1.19617 1.20555
1.20551 1.24093 0.98070 0.95791 0.94140 0.89442 0.89779 0.90374
0.76921 0.89188 0.88880 0.93526 0.89800 0.91002 0.90201 0.92720
0.90352 0.92019 0.89262 0.89286 0.92228 0.89297 0.91122
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.68 8.91 36.01 0.32 -0.36 16
2 C 0.03 0.25 5.84 -82.10 -0.48 -0.23 16
3 N -0.36 -3.86 12.07 33.42 0.40 -3.46 16
4 O 0.10 0.89 11.20 17.19 0.19 1.08 16
5 C -0.05 -0.31 11.22 29.74 0.33 0.02 16
6 C -0.24 -1.71 4.20 -104.42 -0.44 -2.15 16
7 C 0.12 0.77 5.98 -4.98 -0.03 0.74 16
8 N -0.50 -4.20 5.54 -231.89 -1.28 -5.49 16
9 C 0.03 0.27 6.46 -2.76 -0.02 0.25 16
10 C -0.14 -1.42 6.55 -25.38 -0.17 -1.58 16
11 C 0.14 1.73 3.46 -66.07 -0.23 1.50 16
12 H 0.12 1.73 6.99 -51.93 -0.36 1.37 16
13 N -0.62 -8.71 2.89 -171.80 -0.50 -9.20 16
14 C 0.08 0.90 9.15 59.85 0.55 1.45 16
15 C 0.54 10.16 7.69 -10.99 -0.08 10.07 16
16 O -0.51 -11.64 15.23 5.56 0.08 -11.56 16
17 C -0.15 -3.06 4.71 36.00 0.17 -2.89 16
18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16
19 C -0.53 -15.25 9.50 30.94 0.29 -14.95 16
20 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16
21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16
22 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16
23 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16
24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16
25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
27 C 0.01 0.07 4.23 -1.89 -0.01 0.07 16
28 H 0.09 0.75 6.53 -51.93 -0.34 0.41 16
29 H 0.08 0.54 7.99 -51.93 -0.41 0.13 16
30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16
31 H 0.21 0.47 8.06 -52.49 -0.42 0.05 16
32 H 0.09 0.41 8.08 -51.93 -0.42 -0.01 16
33 H 0.09 0.56 7.99 -51.93 -0.41 0.15 16
34 H 0.05 0.30 6.21 -51.93 -0.32 -0.02 16
35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16
36 H 0.07 0.71 6.99 -51.93 -0.36 0.34 16
37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16
38 H 0.05 0.57 7.90 -51.93 -0.41 0.16 16
39 H 0.08 0.90 6.44 -51.93 -0.33 0.57 16
40 H 0.06 0.64 6.08 -51.93 -0.32 0.32 16
41 H 0.09 1.69 7.40 -51.92 -0.38 1.30 16
42 H 0.09 1.70 8.11 -51.92 -0.42 1.28 16
43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16
44 H 0.09 0.94 7.97 -51.93 -0.41 0.52 16
45 H 0.07 0.69 1.42 -51.93 -0.07 0.61 16
LS Contribution 369.68 15.07 5.57 5.57
Total: -1.00 -35.01 369.68 -8.14 -43.14
By element:
Atomic # 1 Polarization: 5.06 SS G_CDS: -6.23 Total: -1.17 kcal
Atomic # 6 Polarization: -6.17 SS G_CDS: 0.12 Total: -6.06 kcal
Atomic # 7 Polarization: -42.94 SS G_CDS: -0.64 Total: -43.58 kcal
Atomic # 8 Polarization: -10.75 SS G_CDS: 0.28 Total: -10.47 kcal
Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal
Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal
Total LS contribution 5.57 Total: 5.57 kcal
Total: -35.01 -8.14 -43.14 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001715014695.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.087 kcal
(2) G-P(sol) polarization free energy of solvation -35.006 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.081 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.144 kcal
(6) G-S(sol) free energy of system = (1) + (5) 49.943 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds