Wall clock time and date at job start Tue Mar 31 2020 22:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30171 * 126.80178 * 2 1 4 4 O 1.20923 * 111.60389 * 179.97438 * 3 2 1 5 5 C 1.34034 * 111.56833 * 0.02562 * 4 3 2 6 6 C 1.35451 * 106.44611 * 359.97438 * 5 4 3 7 7 C 1.50701 * 128.00983 * 180.02562 * 6 5 4 8 8 N 1.46893 * 109.47512 * 259.97550 * 7 6 5 9 9 C 1.47901 * 111.00199 * 69.86570 * 8 7 6 10 10 C 1.53988 * 107.06369 * 214.15851 * 9 8 7 11 11 C 1.54592 * 105.13846 * 1.22937 * 10 9 8 12 12 H 1.09005 * 110.72599 * 263.59490 * 11 10 9 13 13 N 1.46505 * 110.72458 * 140.49303 * 11 10 9 14 14 C 1.46504 * 119.99724 * 301.44941 * 13 11 10 15 15 C 1.34778 * 120.00041 * 121.45407 * 13 11 10 16 16 O 1.21280 * 119.99835 * 359.97438 * 15 13 11 17 17 C 1.50695 * 119.99607 * 179.97438 * 15 13 11 18 18 S 1.81005 * 109.46732 * 179.97438 * 17 15 13 19 19 C 1.76203 * 99.99923 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00074 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00037 * 179.97438 * 19 18 17 22 22 N 1.31630 * 119.99940 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99971 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47132 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47381 * 119.99834 * 23 21 19 26 26 H 1.48501 * 109.46699 * 239.99925 * 23 21 19 27 27 C 1.48539 * 110.99622 * 312.47790 * 8 7 6 28 28 H 1.09003 * 109.46685 * 90.01751 * 1 2 3 29 29 H 1.09000 * 109.47092 * 210.01902 * 1 2 3 30 30 H 1.09002 * 109.46993 * 330.02722 * 1 2 3 31 31 H 1.08002 * 126.78139 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.47190 * 19.97710 * 7 6 5 33 33 H 1.08999 * 109.47449 * 139.96897 * 7 6 5 34 34 H 1.09001 * 109.91844 * 333.52011 * 9 8 7 35 35 H 1.09005 * 109.91153 * 94.80632 * 9 8 7 36 36 H 1.09001 * 110.30667 * 120.14245 * 10 9 8 37 37 H 1.09000 * 110.31346 * 242.30893 * 10 9 8 38 38 H 1.09000 * 109.46797 * 90.00574 * 14 13 11 39 39 H 1.09003 * 109.46825 * 209.99885 * 14 13 11 40 40 H 1.08994 * 109.47432 * 330.00174 * 14 13 11 41 41 H 1.09001 * 109.47317 * 299.99780 * 17 15 13 42 42 H 1.08994 * 109.47492 * 60.00437 * 17 15 13 43 43 H 0.96992 * 119.99863 * 179.97438 * 22 21 19 44 44 H 1.08998 * 110.66662 * 278.14863 * 27 8 7 45 45 H 1.08999 * 110.67292 * 41.28422 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6025 -0.6068 0.0004 6 6 2.3540 -1.1320 0.0003 7 6 1.9591 -2.5864 0.0006 8 7 1.5983 -2.9962 -1.3631 9 6 2.7910 -3.0391 -2.2366 10 6 2.3358 -2.6115 -3.6442 11 6 0.8290 -2.2964 -3.5028 12 1 0.2259 -3.1548 -3.7989 13 7 0.4699 -1.1159 -4.2926 14 6 1.1313 0.1660 -4.0361 15 6 -0.4690 -1.2091 -5.2551 16 8 -1.0162 -2.2703 -5.4676 17 6 -0.8388 0.0054 -6.0670 18 16 -2.1172 -0.4388 -7.2689 19 6 -2.3511 1.1197 -8.0569 20 1 -1.7735 1.9763 -7.7418 21 6 -3.2768 1.2465 -9.0834 22 7 -3.9796 0.2022 -9.4684 23 14 -3.5242 2.8986 -9.9193 24 1 -2.6191 3.9038 -9.3065 25 1 -3.2168 2.7721 -11.3666 26 1 -4.9339 3.3333 -9.7487 27 6 0.6746 -2.0145 -1.9871 28 1 -0.3633 -0.0003 -1.0277 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3633 0.8902 0.5134 31 1 4.5340 -1.1535 0.0011 32 1 2.7958 -3.1900 0.3521 33 1 1.1043 -2.7306 0.6615 34 1 3.5483 -2.3485 -1.8654 35 1 3.1920 -4.0523 -2.2679 36 1 2.8798 -1.7227 -3.9639 37 1 2.4874 -3.4245 -4.3542 38 1 2.0223 0.2460 -4.6587 39 1 0.4478 0.9813 -4.2734 40 1 1.4156 0.2243 -2.9855 41 1 -1.2171 0.7840 -5.4046 42 1 0.0422 0.3726 -6.5933 43 1 -4.6267 0.2909 -10.1855 44 1 -0.3513 -2.1931 -1.6652 45 1 0.9807 -0.9950 -1.7523 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715014695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:40 Heat of formation + Delta-G solvation = 49.942767 kcal Electronic energy + Delta-G solvation = -27818.363783 eV Core-core repulsion = 23966.372549 eV Total energy + Delta-G solvation = -3851.991234 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.37906 -40.32014 -38.71610 -35.80561 -34.83708 -32.90961 -32.43512 -31.08125 -29.84334 -29.21434 -28.02889 -26.94418 -26.01865 -25.45511 -22.71539 -21.91799 -21.11931 -20.71830 -19.12695 -18.09631 -17.87525 -17.73288 -17.02919 -16.43030 -15.79244 -15.39696 -15.04480 -15.02389 -14.80996 -14.61119 -14.28182 -13.90445 -13.52480 -13.44038 -13.32475 -12.99455 -12.88821 -12.81103 -12.62529 -12.35006 -12.32681 -12.04116 -11.83945 -11.69363 -11.51867 -11.32286 -11.07539 -11.02598 -10.77797 -10.73343 -10.24006 -9.93384 -9.80398 -9.38959 -9.07966 -8.88245 -8.56950 -8.23340 -6.50996 -6.22408 -3.93002 1.06616 1.75939 2.81976 2.85565 2.99855 3.21142 3.24407 3.30361 3.53030 3.74789 3.81412 4.07892 4.19497 4.32663 4.38547 4.52064 4.63260 4.80080 4.87637 4.97566 5.00319 5.09256 5.12295 5.12872 5.14756 5.20977 5.26180 5.30762 5.37754 5.39204 5.41899 5.54392 5.56074 5.68282 5.69331 5.76452 5.85808 5.91043 6.00844 6.11514 6.36221 6.56064 6.67911 7.48444 7.59411 7.88523 8.34799 8.51735 9.23096 10.85082 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018470 B = 0.002624 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.612017 B =10667.052851 C =11461.527322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.028 3.972 3 N -0.362 5.362 4 O 0.099 5.901 5 C -0.051 4.051 6 C -0.236 4.236 7 C 0.121 3.879 8 N -0.500 5.500 9 C 0.035 3.965 10 C -0.143 4.143 11 C 0.140 3.860 12 H 0.116 0.884 13 N -0.616 5.616 14 C 0.079 3.921 15 C 0.535 3.465 16 O -0.513 6.513 17 C -0.150 4.150 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.007 3.993 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.214 0.786 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.089 0.911 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.277 -3.633 22.056 28.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 N -0.067 5.067 4 O 0.034 5.966 5 C -0.133 4.133 6 C -0.241 4.241 7 C -0.008 4.008 8 N -0.222 5.222 9 C -0.093 4.093 10 C -0.182 4.182 11 C 0.035 3.965 12 H 0.134 0.866 13 N -0.351 5.351 14 C -0.064 4.064 15 C 0.324 3.676 16 O -0.387 6.387 17 C -0.300 4.300 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.121 4.121 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.231 0.769 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.107 0.893 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.858 -4.482 21.651 27.209 hybrid contribution 1.055 2.355 -0.278 2.596 sum 16.913 -2.127 21.373 27.338 Atomic orbital electron populations 1.20465 0.85768 1.04023 1.04065 1.23546 0.99093 0.88246 1.02311 1.73912 0.89350 1.24060 1.19372 1.84849 1.21650 1.22960 1.67143 1.25890 1.00609 0.83850 1.02994 1.22130 0.92562 0.99538 1.09904 1.20766 1.01940 0.85996 0.92075 1.65078 1.11880 1.44095 1.01145 1.22888 0.92555 1.01618 0.92264 1.22770 0.96289 1.02252 0.96903 1.21854 0.95474 0.89717 0.89465 0.86621 1.47790 1.40853 1.09795 1.36712 1.21719 0.98175 0.85635 1.00882 1.20365 0.77857 0.90369 0.79056 1.90695 1.51506 1.29868 1.66586 1.23560 1.05735 0.98350 1.02400 1.85399 1.44047 1.16194 1.37765 1.22899 1.27001 0.95920 1.22464 0.90914 1.24992 0.94824 0.97751 0.96009 1.70025 1.23156 1.29232 1.27828 0.86120 0.78178 0.82162 0.79058 1.19617 1.20555 1.20551 1.24093 0.98070 0.95791 0.94140 0.89442 0.89779 0.90374 0.76921 0.89188 0.88880 0.93526 0.89800 0.91002 0.90201 0.92720 0.90352 0.92019 0.89262 0.89286 0.92228 0.89297 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 8.91 36.01 0.32 -0.36 16 2 C 0.03 0.25 5.84 -82.10 -0.48 -0.23 16 3 N -0.36 -3.86 12.07 33.42 0.40 -3.46 16 4 O 0.10 0.89 11.20 17.19 0.19 1.08 16 5 C -0.05 -0.31 11.22 29.74 0.33 0.02 16 6 C -0.24 -1.71 4.20 -104.42 -0.44 -2.15 16 7 C 0.12 0.77 5.98 -4.98 -0.03 0.74 16 8 N -0.50 -4.20 5.54 -231.89 -1.28 -5.49 16 9 C 0.03 0.27 6.46 -2.76 -0.02 0.25 16 10 C -0.14 -1.42 6.55 -25.38 -0.17 -1.58 16 11 C 0.14 1.73 3.46 -66.07 -0.23 1.50 16 12 H 0.12 1.73 6.99 -51.93 -0.36 1.37 16 13 N -0.62 -8.71 2.89 -171.80 -0.50 -9.20 16 14 C 0.08 0.90 9.15 59.85 0.55 1.45 16 15 C 0.54 10.16 7.69 -10.99 -0.08 10.07 16 16 O -0.51 -11.64 15.23 5.56 0.08 -11.56 16 17 C -0.15 -3.06 4.71 36.00 0.17 -2.89 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.53 -15.25 9.50 30.94 0.29 -14.95 16 20 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 23 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 C 0.01 0.07 4.23 -1.89 -0.01 0.07 16 28 H 0.09 0.75 6.53 -51.93 -0.34 0.41 16 29 H 0.08 0.54 7.99 -51.93 -0.41 0.13 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.21 0.47 8.06 -52.49 -0.42 0.05 16 32 H 0.09 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.09 0.56 7.99 -51.93 -0.41 0.15 16 34 H 0.05 0.30 6.21 -51.93 -0.32 -0.02 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.71 6.99 -51.93 -0.36 0.34 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.57 7.90 -51.93 -0.41 0.16 16 39 H 0.08 0.90 6.44 -51.93 -0.33 0.57 16 40 H 0.06 0.64 6.08 -51.93 -0.32 0.32 16 41 H 0.09 1.69 7.40 -51.92 -0.38 1.30 16 42 H 0.09 1.70 8.11 -51.92 -0.42 1.28 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.09 0.94 7.97 -51.93 -0.41 0.52 16 45 H 0.07 0.69 1.42 -51.93 -0.07 0.61 16 LS Contribution 369.68 15.07 5.57 5.57 Total: -1.00 -35.01 369.68 -8.14 -43.14 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -6.23 Total: -1.17 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 0.12 Total: -6.06 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -0.64 Total: -43.58 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.28 Total: -10.47 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.01 -8.14 -43.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715014695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.087 kcal (2) G-P(sol) polarization free energy of solvation -35.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds