Wall clock time and date at job start Tue Mar 31 2020 22:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30171 * 126.80178 * 2 1 4 4 O 1.20923 * 111.60389 * 179.97438 * 3 2 1 5 5 C 1.34034 * 111.56833 * 0.02562 * 4 3 2 6 6 C 1.35451 * 106.44611 * 359.97438 * 5 4 3 7 7 C 1.50701 * 128.00983 * 180.02562 * 6 5 4 8 8 N 1.46893 * 109.47512 * 259.97550 * 7 6 5 9 9 C 1.47901 * 111.00199 * 69.86570 * 8 7 6 10 10 C 1.53988 * 107.06369 * 214.15851 * 9 8 7 11 11 C 1.54592 * 105.13846 * 1.22937 * 10 9 8 12 12 H 1.09005 * 110.72599 * 263.59490 * 11 10 9 13 13 N 1.46505 * 110.72458 * 140.49303 * 11 10 9 14 14 C 1.46504 * 119.99724 * 301.44941 * 13 11 10 15 15 C 1.34778 * 120.00041 * 121.45407 * 13 11 10 16 16 O 1.21280 * 119.99835 * 359.97438 * 15 13 11 17 17 C 1.50695 * 119.99607 * 179.97438 * 15 13 11 18 18 S 1.81005 * 109.46732 * 179.97438 * 17 15 13 19 19 C 1.76203 * 99.99923 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00074 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00037 * 179.97438 * 19 18 17 22 22 N 1.31630 * 119.99940 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99971 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47132 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47381 * 119.99834 * 23 21 19 26 26 H 1.48501 * 109.46699 * 239.99925 * 23 21 19 27 27 C 1.48539 * 110.99622 * 312.47790 * 8 7 6 28 28 H 1.09003 * 109.46685 * 90.01751 * 1 2 3 29 29 H 1.09000 * 109.47092 * 210.01902 * 1 2 3 30 30 H 1.09002 * 109.46993 * 330.02722 * 1 2 3 31 31 H 1.08002 * 126.78139 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.47190 * 19.97710 * 7 6 5 33 33 H 1.08999 * 109.47449 * 139.96897 * 7 6 5 34 34 H 1.09001 * 109.91844 * 333.52011 * 9 8 7 35 35 H 1.09005 * 109.91153 * 94.80632 * 9 8 7 36 36 H 1.09001 * 110.30667 * 120.14245 * 10 9 8 37 37 H 1.09000 * 110.31346 * 242.30893 * 10 9 8 38 38 H 1.09000 * 109.46797 * 90.00574 * 14 13 11 39 39 H 1.09003 * 109.46825 * 209.99885 * 14 13 11 40 40 H 1.08994 * 109.47432 * 330.00174 * 14 13 11 41 41 H 1.09001 * 109.47317 * 299.99780 * 17 15 13 42 42 H 1.08994 * 109.47492 * 60.00437 * 17 15 13 43 43 H 0.96992 * 119.99863 * 179.97438 * 22 21 19 44 44 H 1.08998 * 110.66662 * 278.14863 * 27 8 7 45 45 H 1.08999 * 110.67292 * 41.28422 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6025 -0.6068 0.0004 6 6 2.3540 -1.1320 0.0003 7 6 1.9591 -2.5864 0.0006 8 7 1.5983 -2.9962 -1.3631 9 6 2.7910 -3.0391 -2.2366 10 6 2.3358 -2.6115 -3.6442 11 6 0.8290 -2.2964 -3.5028 12 1 0.2259 -3.1548 -3.7989 13 7 0.4699 -1.1159 -4.2926 14 6 1.1313 0.1660 -4.0361 15 6 -0.4690 -1.2091 -5.2551 16 8 -1.0162 -2.2703 -5.4676 17 6 -0.8388 0.0054 -6.0670 18 16 -2.1172 -0.4388 -7.2689 19 6 -2.3511 1.1197 -8.0569 20 1 -1.7735 1.9763 -7.7418 21 6 -3.2768 1.2465 -9.0834 22 7 -3.9796 0.2022 -9.4684 23 14 -3.5242 2.8986 -9.9193 24 1 -2.6191 3.9038 -9.3065 25 1 -3.2168 2.7721 -11.3666 26 1 -4.9339 3.3333 -9.7487 27 6 0.6746 -2.0145 -1.9871 28 1 -0.3633 -0.0003 -1.0277 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3633 0.8902 0.5134 31 1 4.5340 -1.1535 0.0011 32 1 2.7958 -3.1900 0.3521 33 1 1.1043 -2.7306 0.6615 34 1 3.5483 -2.3485 -1.8654 35 1 3.1920 -4.0523 -2.2679 36 1 2.8798 -1.7227 -3.9639 37 1 2.4874 -3.4245 -4.3542 38 1 2.0223 0.2460 -4.6587 39 1 0.4478 0.9813 -4.2734 40 1 1.4156 0.2243 -2.9855 41 1 -1.2171 0.7840 -5.4046 42 1 0.0422 0.3726 -6.5933 43 1 -4.6267 0.2909 -10.1855 44 1 -0.3513 -2.1931 -1.6652 45 1 0.9807 -0.9950 -1.7523 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715014695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:40 Heat of formation + Delta-G solvation = 24.983759 kcal Electronic energy + Delta-G solvation = -27819.446087 eV Core-core repulsion = 23966.372549 eV Total energy + Delta-G solvation = -3853.073538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.99353 -41.39108 -39.82154 -36.82232 -35.67911 -34.60134 -33.64375 -31.93134 -30.81361 -30.13233 -28.99675 -27.91553 -27.67808 -26.71568 -23.42690 -22.64109 -22.00050 -21.37459 -20.39678 -19.62978 -18.79894 -18.44965 -18.33076 -17.45276 -16.89790 -16.76558 -16.60813 -16.27693 -15.66636 -15.55470 -15.33715 -14.93770 -14.56843 -14.49099 -14.34322 -14.10447 -14.04002 -13.70842 -13.56958 -13.36896 -13.31550 -13.16684 -12.98917 -12.92368 -12.71406 -12.57759 -12.40390 -12.36325 -11.89190 -11.72863 -11.59322 -11.17243 -10.96644 -10.84634 -10.48036 -10.29235 -9.77195 -9.50530 -8.69316 -8.36291 -6.14751 0.55410 1.15460 1.22511 1.40279 1.43315 1.49812 1.55543 1.98770 2.25376 2.39860 2.97927 3.08026 3.20491 3.22168 3.50404 3.54884 3.65517 3.76476 3.93428 4.00623 4.04188 4.13141 4.17195 4.28718 4.31125 4.40642 4.46669 4.50172 4.51804 4.63770 4.66067 4.71437 4.75654 4.79582 4.85020 4.92895 4.96675 5.04358 5.14801 5.19833 5.40417 5.43650 5.80296 5.97674 6.16892 6.19144 7.05009 7.07126 7.32536 8.73245 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018470 B = 0.002624 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.612017 B =10667.052851 C =11461.527322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.015 3.985 3 N -0.396 5.396 4 O 0.088 5.912 5 C -0.033 4.033 6 C -0.245 4.245 7 C 0.124 3.876 8 N -0.508 5.508 9 C 0.040 3.960 10 C -0.139 4.139 11 C 0.130 3.870 12 H 0.083 0.917 13 N -0.600 5.600 14 C 0.076 3.924 15 C 0.534 3.466 16 O -0.561 6.561 17 C -0.124 4.124 18 S -0.149 6.149 19 C -0.546 4.546 20 H 0.082 0.918 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 0.999 3.001 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.273 1.273 27 C 0.019 3.981 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.256 0.744 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.271 0.729 44 H 0.078 0.922 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.937 -2.508 23.562 30.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.143 4.143 3 N -0.104 5.104 4 O 0.025 5.975 5 C -0.115 4.115 6 C -0.251 4.251 7 C -0.005 4.005 8 N -0.230 5.230 9 C -0.087 4.087 10 C -0.178 4.178 11 C 0.025 3.975 12 H 0.101 0.899 13 N -0.334 5.334 14 C -0.066 4.066 15 C 0.322 3.678 16 O -0.439 6.439 17 C -0.275 4.275 18 S 0.079 5.921 19 C -0.694 4.694 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.821 3.179 24 H -0.181 1.181 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.109 4.109 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.272 0.728 32 H 0.135 0.865 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 18.571 -3.345 23.206 29.910 hybrid contribution 0.334 1.945 -0.615 2.067 sum 18.905 -1.401 22.591 29.491 Atomic orbital electron populations 1.20466 0.85727 1.04564 1.03556 1.23799 0.99444 0.88897 1.02202 1.73922 0.90122 1.25214 1.21107 1.84811 1.21021 1.24460 1.67204 1.26657 1.01787 0.82741 1.00336 1.22223 0.92677 0.99408 1.10748 1.20867 1.03111 0.85819 0.90656 1.65070 1.12107 1.43617 1.02220 1.22913 0.92522 1.02894 0.90404 1.22744 0.94020 1.02335 0.98661 1.21996 0.96883 0.87863 0.90733 0.89885 1.47717 1.39085 1.11563 1.34990 1.21924 0.98516 0.83927 1.02280 1.20131 0.78661 0.89107 0.79887 1.90679 1.53663 1.31181 1.68351 1.23375 1.03696 0.99437 1.00981 1.85572 1.47782 1.17973 1.40817 1.23217 1.27388 0.95937 1.22812 0.90026 1.26125 0.94220 1.02119 0.96615 1.70185 1.23970 1.31938 1.28601 0.84904 0.78443 0.76807 0.77785 1.18090 1.19852 1.19872 1.23914 0.98253 0.96611 0.92124 0.90395 0.88547 0.90620 0.72823 0.86510 0.88727 0.91442 0.88517 0.90410 0.90835 0.90953 0.90282 0.90474 0.87535 0.87612 0.91948 0.90388 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 8.91 71.24 0.63 -0.66 16 2 C 0.02 0.25 5.84 43.58 0.25 0.51 16 3 N -0.40 -7.86 12.07 -49.56 -0.60 -8.46 16 4 O 0.09 1.37 11.20 71.69 0.80 2.18 16 5 C -0.03 -0.28 11.22 67.18 0.75 0.47 16 6 C -0.24 -2.79 4.20 -19.74 -0.08 -2.88 16 7 C 0.12 1.16 5.98 85.56 0.51 1.67 16 8 N -0.51 -7.31 5.54 -887.57 -4.91 -12.22 16 9 C 0.04 0.49 6.46 86.44 0.56 1.05 16 10 C -0.14 -2.50 6.55 31.47 0.21 -2.29 16 11 C 0.13 3.17 3.46 46.20 0.16 3.33 16 12 H 0.08 2.61 6.99 -2.38 -0.02 2.60 16 13 N -0.60 -16.67 2.89 -815.84 -2.36 -19.02 16 14 C 0.08 1.57 9.15 127.77 1.17 2.74 16 15 C 0.53 20.65 7.69 87.66 0.67 21.33 16 16 O -0.56 -26.72 15.23 -3.03 -0.05 -26.76 16 17 C -0.12 -5.07 4.71 71.23 0.34 -4.74 16 18 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 19 C -0.55 -31.43 9.50 67.96 0.65 -30.79 16 20 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 21 C 0.01 0.80 5.49 84.86 0.47 1.27 16 22 N -0.91 -56.20 13.22 21.65 0.29 -55.91 16 23 Si 1.00 43.86 29.55 68.60 2.03 45.89 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 C 0.02 0.37 4.23 86.65 0.37 0.73 16 28 H 0.08 1.31 6.53 -2.39 -0.02 1.29 16 29 H 0.10 1.15 7.99 -2.39 -0.02 1.14 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.26 -0.31 8.06 -2.91 -0.02 -0.33 16 32 H 0.12 0.52 8.08 -2.39 -0.02 0.50 16 33 H 0.09 0.89 7.99 -2.39 -0.02 0.87 16 34 H 0.07 0.56 6.21 -2.39 -0.01 0.54 16 35 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.08 1.32 6.99 -2.39 -0.02 1.30 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.07 1.31 7.90 -2.39 -0.02 1.29 16 39 H 0.08 1.67 6.44 -2.39 -0.02 1.65 16 40 H 0.08 1.41 6.08 -2.39 -0.01 1.40 16 41 H 0.11 3.97 7.40 -2.39 -0.02 3.96 16 42 H 0.11 3.96 8.11 -2.40 -0.02 3.94 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.08 1.64 7.97 -2.39 -0.02 1.62 16 45 H 0.08 1.37 1.42 -2.39 0.00 1.37 16 Total: -1.00 -79.82 369.68 1.71 -78.11 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 1.02 Total: 13.99 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 6.65 Total: -8.25 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -7.58 Total: -95.62 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: 0.76 Total: -24.59 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -79.82 1.71 -78.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715014695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.089 kcal (2) G-P(sol) polarization free energy of solvation -79.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds