Wall clock time and date at job start Tue Mar 31 2020 22:13:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50708 * 1
3 3 N 1.30171 * 126.80178 * 2 1
4 4 O 1.20923 * 111.60389 * 179.97438 * 3 2 1
5 5 C 1.34034 * 111.56833 * 0.02562 * 4 3 2
6 6 C 1.35451 * 106.44611 * 359.97438 * 5 4 3
7 7 C 1.50701 * 128.00983 * 180.02562 * 6 5 4
8 8 N 1.46893 * 109.47512 * 259.97550 * 7 6 5
9 9 C 1.47901 * 111.00199 * 69.86570 * 8 7 6
10 10 C 1.53988 * 107.06369 * 214.15851 * 9 8 7
11 11 C 1.54592 * 105.13846 * 1.22937 * 10 9 8
12 12 H 1.09005 * 110.72599 * 263.59490 * 11 10 9
13 13 N 1.46505 * 110.72458 * 140.49303 * 11 10 9
14 14 C 1.46504 * 119.99724 * 301.44941 * 13 11 10
15 15 C 1.34778 * 120.00041 * 121.45407 * 13 11 10
16 16 O 1.21280 * 119.99835 * 359.97438 * 15 13 11
17 17 C 1.50695 * 119.99607 * 179.97438 * 15 13 11
18 18 S 1.81005 * 109.46732 * 179.97438 * 17 15 13
19 19 C 1.76203 * 99.99923 * 180.02562 * 18 17 15
20 20 H 1.08003 * 120.00074 * 0.02562 * 19 18 17
21 21 C 1.38803 * 120.00037 * 179.97438 * 19 18 17
22 22 N 1.31630 * 119.99940 * 359.97438 * 21 19 18
23 23 Si 1.86798 * 119.99971 * 180.02562 * 21 19 18
24 24 H 1.48505 * 109.47132 * 359.97438 * 23 21 19
25 25 H 1.48497 * 109.47381 * 119.99834 * 23 21 19
26 26 H 1.48501 * 109.46699 * 239.99925 * 23 21 19
27 27 C 1.48539 * 110.99622 * 312.47790 * 8 7 6
28 28 H 1.09003 * 109.46685 * 90.01751 * 1 2 3
29 29 H 1.09000 * 109.47092 * 210.01902 * 1 2 3
30 30 H 1.09002 * 109.46993 * 330.02722 * 1 2 3
31 31 H 1.08002 * 126.78139 * 180.02562 * 5 4 3
32 32 H 1.09003 * 109.47190 * 19.97710 * 7 6 5
33 33 H 1.08999 * 109.47449 * 139.96897 * 7 6 5
34 34 H 1.09001 * 109.91844 * 333.52011 * 9 8 7
35 35 H 1.09005 * 109.91153 * 94.80632 * 9 8 7
36 36 H 1.09001 * 110.30667 * 120.14245 * 10 9 8
37 37 H 1.09000 * 110.31346 * 242.30893 * 10 9 8
38 38 H 1.09000 * 109.46797 * 90.00574 * 14 13 11
39 39 H 1.09003 * 109.46825 * 209.99885 * 14 13 11
40 40 H 1.08994 * 109.47432 * 330.00174 * 14 13 11
41 41 H 1.09001 * 109.47317 * 299.99780 * 17 15 13
42 42 H 1.08994 * 109.47492 * 60.00437 * 17 15 13
43 43 H 0.96992 * 119.99863 * 179.97438 * 22 21 19
44 44 H 1.08998 * 110.66662 * 278.14863 * 27 8 7
45 45 H 1.08999 * 110.67292 * 41.28422 * 27 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2869 1.0423 0.0000
4 8 3.4538 0.7253 0.0005
5 6 3.6025 -0.6068 0.0004
6 6 2.3540 -1.1320 0.0003
7 6 1.9591 -2.5864 0.0006
8 7 1.5983 -2.9962 -1.3631
9 6 2.7910 -3.0391 -2.2366
10 6 2.3358 -2.6115 -3.6442
11 6 0.8290 -2.2964 -3.5028
12 1 0.2259 -3.1548 -3.7989
13 7 0.4699 -1.1159 -4.2926
14 6 1.1313 0.1660 -4.0361
15 6 -0.4690 -1.2091 -5.2551
16 8 -1.0162 -2.2703 -5.4676
17 6 -0.8388 0.0054 -6.0670
18 16 -2.1172 -0.4388 -7.2689
19 6 -2.3511 1.1197 -8.0569
20 1 -1.7735 1.9763 -7.7418
21 6 -3.2768 1.2465 -9.0834
22 7 -3.9796 0.2022 -9.4684
23 14 -3.5242 2.8986 -9.9193
24 1 -2.6191 3.9038 -9.3065
25 1 -3.2168 2.7721 -11.3666
26 1 -4.9339 3.3333 -9.7487
27 6 0.6746 -2.0145 -1.9871
28 1 -0.3633 -0.0003 -1.0277
29 1 -0.3633 -0.8898 0.5141
30 1 -0.3633 0.8902 0.5134
31 1 4.5340 -1.1535 0.0011
32 1 2.7958 -3.1900 0.3521
33 1 1.1043 -2.7306 0.6615
34 1 3.5483 -2.3485 -1.8654
35 1 3.1920 -4.0523 -2.2679
36 1 2.8798 -1.7227 -3.9639
37 1 2.4874 -3.4245 -4.3542
38 1 2.0223 0.2460 -4.6587
39 1 0.4478 0.9813 -4.2734
40 1 1.4156 0.2243 -2.9855
41 1 -1.2171 0.7840 -5.4046
42 1 0.0422 0.3726 -6.5933
43 1 -4.6267 0.2909 -10.1855
44 1 -0.3513 -2.1931 -1.6652
45 1 0.9807 -0.9950 -1.7523
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001715014695.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:13:40
Heat of formation + Delta-G solvation = 24.983759 kcal
Electronic energy + Delta-G solvation = -27819.446087 eV
Core-core repulsion = 23966.372549 eV
Total energy + Delta-G solvation = -3853.073538 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-45.99353 -41.39108 -39.82154 -36.82232 -35.67911 -34.60134 -33.64375 -31.93134
-30.81361 -30.13233 -28.99675 -27.91553 -27.67808 -26.71568 -23.42690 -22.64109
-22.00050 -21.37459 -20.39678 -19.62978 -18.79894 -18.44965 -18.33076 -17.45276
-16.89790 -16.76558 -16.60813 -16.27693 -15.66636 -15.55470 -15.33715 -14.93770
-14.56843 -14.49099 -14.34322 -14.10447 -14.04002 -13.70842 -13.56958 -13.36896
-13.31550 -13.16684 -12.98917 -12.92368 -12.71406 -12.57759 -12.40390 -12.36325
-11.89190 -11.72863 -11.59322 -11.17243 -10.96644 -10.84634 -10.48036 -10.29235
-9.77195 -9.50530 -8.69316 -8.36291 -6.14751 0.55410 1.15460 1.22511
1.40279 1.43315 1.49812 1.55543 1.98770 2.25376 2.39860 2.97927
3.08026 3.20491 3.22168 3.50404 3.54884 3.65517 3.76476 3.93428
4.00623 4.04188 4.13141 4.17195 4.28718 4.31125 4.40642 4.46669
4.50172 4.51804 4.63770 4.66067 4.71437 4.75654 4.79582 4.85020
4.92895 4.96675 5.04358 5.14801 5.19833 5.40417 5.43650 5.80296
5.97674 6.16892 6.19144 7.05009 7.07126 7.32536 8.73245
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.018470 B = 0.002624 C = 0.002442
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1515.612017 B =10667.052851 C =11461.527322
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.086 4.086
2 C 0.015 3.985
3 N -0.396 5.396
4 O 0.088 5.912
5 C -0.033 4.033
6 C -0.245 4.245
7 C 0.124 3.876
8 N -0.508 5.508
9 C 0.040 3.960
10 C -0.139 4.139
11 C 0.130 3.870
12 H 0.083 0.917
13 N -0.600 5.600
14 C 0.076 3.924
15 C 0.534 3.466
16 O -0.561 6.561
17 C -0.124 4.124
18 S -0.149 6.149
19 C -0.546 4.546
20 H 0.082 0.918
21 C 0.014 3.986
22 N -0.910 5.910
23 Si 0.999 3.001
24 H -0.257 1.257
25 H -0.273 1.273
26 H -0.273 1.273
27 C 0.019 3.981
28 H 0.078 0.922
29 H 0.096 0.904
30 H 0.075 0.925
31 H 0.256 0.744
32 H 0.117 0.883
33 H 0.094 0.906
34 H 0.067 0.933
35 H 0.097 0.903
36 H 0.077 0.923
37 H 0.073 0.927
38 H 0.072 0.928
39 H 0.079 0.921
40 H 0.077 0.923
41 H 0.107 0.893
42 H 0.106 0.894
43 H 0.271 0.729
44 H 0.078 0.922
45 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.937 -2.508 23.562 30.967
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.143 4.143
3 N -0.104 5.104
4 O 0.025 5.975
5 C -0.115 4.115
6 C -0.251 4.251
7 C -0.005 4.005
8 N -0.230 5.230
9 C -0.087 4.087
10 C -0.178 4.178
11 C 0.025 3.975
12 H 0.101 0.899
13 N -0.334 5.334
14 C -0.066 4.066
15 C 0.322 3.678
16 O -0.439 6.439
17 C -0.275 4.275
18 S 0.079 5.921
19 C -0.694 4.694
20 H 0.100 0.900
21 C -0.191 4.191
22 N -0.547 5.547
23 Si 0.821 3.179
24 H -0.181 1.181
25 H -0.199 1.199
26 H -0.199 1.199
27 C -0.109 4.109
28 H 0.096 0.904
29 H 0.115 0.885
30 H 0.094 0.906
31 H 0.272 0.728
32 H 0.135 0.865
33 H 0.113 0.887
34 H 0.086 0.914
35 H 0.115 0.885
36 H 0.096 0.904
37 H 0.092 0.908
38 H 0.090 0.910
39 H 0.097 0.903
40 H 0.095 0.905
41 H 0.125 0.875
42 H 0.124 0.876
43 H 0.081 0.919
44 H 0.096 0.904
45 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 18.571 -3.345 23.206 29.910
hybrid contribution 0.334 1.945 -0.615 2.067
sum 18.905 -1.401 22.591 29.491
Atomic orbital electron populations
1.20466 0.85727 1.04564 1.03556 1.23799 0.99444 0.88897 1.02202
1.73922 0.90122 1.25214 1.21107 1.84811 1.21021 1.24460 1.67204
1.26657 1.01787 0.82741 1.00336 1.22223 0.92677 0.99408 1.10748
1.20867 1.03111 0.85819 0.90656 1.65070 1.12107 1.43617 1.02220
1.22913 0.92522 1.02894 0.90404 1.22744 0.94020 1.02335 0.98661
1.21996 0.96883 0.87863 0.90733 0.89885 1.47717 1.39085 1.11563
1.34990 1.21924 0.98516 0.83927 1.02280 1.20131 0.78661 0.89107
0.79887 1.90679 1.53663 1.31181 1.68351 1.23375 1.03696 0.99437
1.00981 1.85572 1.47782 1.17973 1.40817 1.23217 1.27388 0.95937
1.22812 0.90026 1.26125 0.94220 1.02119 0.96615 1.70185 1.23970
1.31938 1.28601 0.84904 0.78443 0.76807 0.77785 1.18090 1.19852
1.19872 1.23914 0.98253 0.96611 0.92124 0.90395 0.88547 0.90620
0.72823 0.86510 0.88727 0.91442 0.88517 0.90410 0.90835 0.90953
0.90282 0.90474 0.87535 0.87612 0.91948 0.90388 0.90468
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.30 8.91 71.24 0.63 -0.66 16
2 C 0.02 0.25 5.84 43.58 0.25 0.51 16
3 N -0.40 -7.86 12.07 -49.56 -0.60 -8.46 16
4 O 0.09 1.37 11.20 71.69 0.80 2.18 16
5 C -0.03 -0.28 11.22 67.18 0.75 0.47 16
6 C -0.24 -2.79 4.20 -19.74 -0.08 -2.88 16
7 C 0.12 1.16 5.98 85.56 0.51 1.67 16
8 N -0.51 -7.31 5.54 -887.57 -4.91 -12.22 16
9 C 0.04 0.49 6.46 86.44 0.56 1.05 16
10 C -0.14 -2.50 6.55 31.47 0.21 -2.29 16
11 C 0.13 3.17 3.46 46.20 0.16 3.33 16
12 H 0.08 2.61 6.99 -2.38 -0.02 2.60 16
13 N -0.60 -16.67 2.89 -815.84 -2.36 -19.02 16
14 C 0.08 1.57 9.15 127.77 1.17 2.74 16
15 C 0.53 20.65 7.69 87.66 0.67 21.33 16
16 O -0.56 -26.72 15.23 -3.03 -0.05 -26.76 16
17 C -0.12 -5.07 4.71 71.23 0.34 -4.74 16
18 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16
19 C -0.55 -31.43 9.50 67.96 0.65 -30.79 16
20 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16
21 C 0.01 0.80 5.49 84.86 0.47 1.27 16
22 N -0.91 -56.20 13.22 21.65 0.29 -55.91 16
23 Si 1.00 43.86 29.55 68.60 2.03 45.89 16
24 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16
25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16
26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16
27 C 0.02 0.37 4.23 86.65 0.37 0.73 16
28 H 0.08 1.31 6.53 -2.39 -0.02 1.29 16
29 H 0.10 1.15 7.99 -2.39 -0.02 1.14 16
30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16
31 H 0.26 -0.31 8.06 -2.91 -0.02 -0.33 16
32 H 0.12 0.52 8.08 -2.39 -0.02 0.50 16
33 H 0.09 0.89 7.99 -2.39 -0.02 0.87 16
34 H 0.07 0.56 6.21 -2.39 -0.01 0.54 16
35 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16
36 H 0.08 1.32 6.99 -2.39 -0.02 1.30 16
37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16
38 H 0.07 1.31 7.90 -2.39 -0.02 1.29 16
39 H 0.08 1.67 6.44 -2.39 -0.02 1.65 16
40 H 0.08 1.41 6.08 -2.39 -0.01 1.40 16
41 H 0.11 3.97 7.40 -2.39 -0.02 3.96 16
42 H 0.11 3.96 8.11 -2.40 -0.02 3.94 16
43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16
44 H 0.08 1.64 7.97 -2.39 -0.02 1.62 16
45 H 0.08 1.37 1.42 -2.39 0.00 1.37 16
Total: -1.00 -79.82 369.68 1.71 -78.11
By element:
Atomic # 1 Polarization: 12.98 SS G_CDS: 1.02 Total: 13.99 kcal
Atomic # 6 Polarization: -14.91 SS G_CDS: 6.65 Total: -8.25 kcal
Atomic # 7 Polarization: -88.04 SS G_CDS: -7.58 Total: -95.62 kcal
Atomic # 8 Polarization: -25.34 SS G_CDS: 0.76 Total: -24.59 kcal
Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal
Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal
Total: -79.82 1.71 -78.11 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001715014695.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 103.089 kcal
(2) G-P(sol) polarization free energy of solvation -79.815 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.274 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.105 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.984 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds