Wall clock time and date at job start Tue Mar 31 2020 22:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34322 * 126.44370 * 2 1 4 4 N 1.34482 * 107.67106 * 179.72028 * 3 2 1 5 5 C 1.30257 * 108.69829 * 0.42082 * 4 3 2 6 6 C 1.50701 * 125.62272 * 179.83625 * 5 4 3 7 7 H 1.08996 * 109.47242 * 164.69284 * 6 5 4 8 8 C 1.52995 * 109.47125 * 284.69558 * 6 5 4 9 9 N 1.46895 * 109.46671 * 44.69423 * 6 5 4 10 10 C 1.46906 * 110.99789 * 155.00024 * 9 6 5 11 11 C 1.50703 * 109.47109 * 179.97438 * 10 9 6 12 12 C 1.30998 * 119.99833 * 125.00095 * 11 10 9 13 13 C 1.50703 * 119.99833 * 179.97438 * 12 11 10 14 14 N 1.46498 * 109.47193 * 125.00185 * 13 12 11 15 15 C 1.34773 * 120.00274 * 179.97438 * 14 13 12 16 16 O 1.21284 * 119.99975 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00264 * 179.97438 * 15 14 13 18 18 S 1.80994 * 109.47099 * 180.02562 * 17 15 14 19 19 C 1.76202 * 99.99915 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00042 * 0.02562 * 19 18 17 21 21 C 1.38805 * 119.99995 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99709 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00077 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47034 * 89.99289 * 23 21 19 25 25 H 1.48495 * 109.47271 * 209.99702 * 23 21 19 26 26 H 1.48506 * 109.47147 * 329.99741 * 23 21 19 27 27 O 1.33977 * 108.75842 * 359.57733 * 5 4 3 28 28 H 1.09003 * 109.47932 * 270.03015 * 1 2 3 29 29 H 1.09007 * 109.47389 * 30.03113 * 1 2 3 30 30 H 1.09005 * 109.47225 * 150.02423 * 1 2 3 31 31 H 1.08000 * 126.16926 * 359.97438 * 3 2 1 32 32 H 1.09009 * 109.47420 * 59.99603 * 8 6 5 33 33 H 1.09002 * 109.47368 * 179.97438 * 8 6 5 34 34 H 1.09003 * 109.47249 * 300.00182 * 8 6 5 35 35 H 1.00902 * 111.00273 * 278.95547 * 9 6 5 36 36 H 1.08992 * 109.47459 * 299.99826 * 10 9 6 37 37 H 1.09004 * 109.47040 * 59.99976 * 10 9 6 38 38 H 1.07999 * 119.99945 * 304.99966 * 11 10 9 39 39 H 1.07999 * 120.00222 * 359.97438 * 12 11 10 40 40 H 1.09001 * 109.47109 * 244.99905 * 13 12 11 41 41 H 1.08998 * 109.47319 * 4.99924 * 13 12 11 42 42 H 0.97006 * 120.00065 * 359.97438 * 14 13 12 43 43 H 1.09001 * 109.46979 * 300.00071 * 17 15 14 44 44 H 1.08998 * 109.47096 * 59.99874 * 17 15 14 45 45 H 0.97000 * 120.00008 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0805 0.0000 4 7 3.5781 0.6478 0.0063 5 6 3.5765 -0.6548 0.0010 6 6 4.8004 -1.5341 0.0016 7 1 4.5162 -2.5521 0.2678 8 6 5.4328 -1.5288 -1.3915 9 7 5.7690 -1.0241 0.9811 10 6 6.6579 -2.0959 1.4496 11 6 7.6358 -1.5360 2.4502 12 6 7.7349 -2.0737 3.6406 13 6 8.7133 -1.5142 4.6410 14 7 8.0059 -1.1731 5.8777 15 6 8.6835 -0.6531 6.9202 16 8 9.8790 -0.4672 6.8344 17 6 7.9557 -0.3016 8.1922 18 16 9.1308 0.3702 9.3937 19 6 8.0422 0.6860 10.7427 20 1 6.9901 0.4594 10.6520 21 6 8.5369 1.2250 11.9223 22 7 7.7237 1.4604 12.9301 23 14 10.3567 1.6162 12.0794 24 1 10.6039 3.0098 11.6300 25 1 10.7734 1.4720 13.4974 26 1 11.1394 0.6778 11.2355 27 8 2.3073 -1.0840 0.0006 28 1 -0.3635 0.0005 1.0276 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3634 -0.8902 -0.5135 31 1 1.9821 2.1112 -0.0004 32 1 5.7170 -0.5107 -1.6577 33 1 6.3183 -2.1645 -1.3910 34 1 4.7140 -1.9071 -2.1183 35 1 6.2995 -0.2557 0.5987 36 1 6.0649 -2.8800 1.9202 37 1 7.2034 -2.5118 0.6024 38 1 8.2550 -0.6916 2.1858 39 1 7.1155 -2.9179 3.9051 40 1 9.4802 -2.2587 4.8547 41 1 9.1804 -0.6189 4.2308 42 1 7.0497 -1.3214 5.9463 43 1 7.1894 0.4434 7.9783 44 1 7.4879 -1.1966 8.6022 45 1 8.0693 1.8374 13.7544 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715789230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:23 Heat of formation + Delta-G solvation = -30.209605 kcal Electronic energy + Delta-G solvation = -24802.076253 eV Core-core repulsion = 20946.609352 eV Total energy + Delta-G solvation = -3855.466901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.28945 -40.64702 -38.65178 -36.81059 -35.65197 -34.69067 -34.61510 -33.17413 -31.70079 -30.52322 -27.94690 -27.77513 -27.39532 -24.85794 -24.02021 -22.62831 -21.90112 -21.72169 -20.70715 -19.82042 -18.30219 -17.87521 -17.71141 -17.39113 -17.06074 -16.77415 -16.37075 -16.22622 -15.73052 -15.65221 -15.21736 -14.97399 -14.90162 -14.75416 -14.41490 -14.23534 -14.04105 -13.77625 -13.68198 -13.34822 -13.25324 -13.21035 -13.01729 -12.94249 -12.90082 -12.63940 -12.41752 -12.29308 -12.02642 -11.85964 -11.46293 -11.17185 -11.13694 -10.54594 -10.43530 -10.04969 -9.61926 -9.41272 -8.99924 -8.51556 -6.22562 0.45643 0.90974 1.10458 1.31736 1.47838 1.55648 1.57982 1.64333 1.73852 2.24887 2.39608 2.73963 2.86517 3.11022 3.26853 3.74342 3.81972 3.89337 3.96738 4.03219 4.11451 4.13130 4.22626 4.40826 4.44010 4.46672 4.51796 4.53429 4.60900 4.66381 4.69265 4.74046 4.81468 4.88251 5.05285 5.14854 5.19441 5.35613 5.38461 5.67162 5.70708 5.76414 5.90010 6.11310 6.29403 6.46896 6.79243 6.93418 7.18177 8.60854 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.001639 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.507491 B =17081.879122 C =18639.736415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.054 4.054 3 C -0.069 4.069 4 N -0.496 5.496 5 C 0.188 3.812 6 C 0.186 3.814 7 H 0.119 0.881 8 C -0.170 4.170 9 N -0.687 5.687 10 C 0.093 3.907 11 C -0.126 4.126 12 C -0.162 4.162 13 C 0.150 3.850 14 N -0.709 5.709 15 C 0.534 3.466 16 O -0.564 6.564 17 C -0.112 4.112 18 S -0.175 6.175 19 C -0.530 4.530 20 H 0.062 0.938 21 C 0.045 3.955 22 N -0.917 5.917 23 Si 0.915 3.085 24 H -0.262 1.262 25 H -0.258 1.258 26 H -0.237 1.237 27 O -0.216 6.216 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.198 0.802 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.355 0.645 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.113 0.887 39 H 0.133 0.867 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.416 0.584 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.323 -9.794 -34.888 38.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.106 4.106 3 C -0.206 4.206 4 N -0.225 5.225 5 C -0.020 4.020 6 C 0.075 3.925 7 H 0.137 0.863 8 C -0.229 4.229 9 N -0.320 5.320 10 C -0.034 4.034 11 C -0.145 4.145 12 C -0.181 4.181 13 C 0.027 3.973 14 N -0.363 5.363 15 C 0.319 3.681 16 O -0.443 6.443 17 C -0.263 4.263 18 S 0.051 5.949 19 C -0.678 4.678 20 H 0.080 0.920 21 C -0.161 4.161 22 N -0.554 5.554 23 Si 0.737 3.263 24 H -0.187 1.187 25 H -0.182 1.182 26 H -0.161 1.161 27 O -0.103 6.103 28 H 0.111 0.889 29 H 0.131 0.869 30 H 0.104 0.896 31 H 0.215 0.785 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.175 0.825 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.131 0.869 39 H 0.151 0.849 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.253 0.747 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.287 -9.176 -34.327 36.992 hybrid contribution -1.449 -0.076 0.161 1.460 sum -11.736 -9.252 -34.166 37.292 Atomic orbital electron populations 1.20473 0.81238 1.05731 1.04851 1.24197 0.96523 0.83988 1.05935 1.23525 0.87719 1.01634 1.07747 1.70326 1.23917 1.10062 1.18154 1.26677 0.84582 0.90461 1.00263 1.19762 0.84581 0.95101 0.93088 0.86340 1.22426 1.02207 1.03473 0.94813 1.60091 1.20027 1.11152 1.40705 1.21096 0.92516 0.92891 0.96927 1.22850 0.97495 0.99070 0.95097 1.22729 0.99879 1.01461 0.94067 1.20369 0.94418 0.99609 0.82910 1.45764 1.12881 1.64421 1.13208 1.19970 0.86981 0.76539 0.84578 1.90685 1.16393 1.54270 1.82930 1.23274 1.02070 1.05682 0.95229 1.84685 1.15931 1.83129 1.11119 1.22470 0.96258 1.48739 1.00300 0.91988 1.25581 1.02646 0.93642 0.94191 1.70016 1.37307 1.43248 1.04875 0.85851 0.80232 0.80713 0.79472 1.18717 1.18219 1.16064 1.84366 1.18140 1.37475 1.70347 0.88866 0.86919 0.89564 0.78464 0.92158 0.88851 0.91125 0.82506 0.89380 0.91448 0.86923 0.84930 0.91232 0.92097 0.74689 0.87043 0.86707 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.43 71.23 0.74 0.32 16 2 C -0.05 -0.83 7.38 24.79 0.18 -0.65 16 3 C -0.07 -1.22 11.80 83.39 0.98 -0.24 16 4 N -0.50 -10.74 11.27 -303.82 -3.43 -14.16 16 5 C 0.19 3.47 7.19 88.34 0.64 4.11 16 6 C 0.19 2.14 3.13 44.17 0.14 2.28 16 7 H 0.12 1.00 7.80 -2.39 -0.02 0.98 16 8 C -0.17 -1.31 9.14 71.98 0.66 -0.65 16 9 N -0.69 -8.67 6.21 -499.47 -3.10 -11.77 16 10 C 0.09 0.81 5.92 85.56 0.51 1.32 16 11 C -0.13 -1.51 9.38 25.65 0.24 -1.27 16 12 C -0.16 -2.23 9.24 25.65 0.24 -1.99 16 13 C 0.15 3.12 6.11 85.63 0.52 3.65 16 14 N -0.71 -17.39 5.55 -466.79 -2.59 -19.98 16 15 C 0.53 18.85 7.85 87.66 0.69 19.54 16 16 O -0.56 -24.62 15.86 -3.04 -0.05 -24.67 16 17 C -0.11 -4.31 6.16 71.24 0.44 -3.87 16 18 S -0.18 -9.02 18.55 -56.49 -1.05 -10.06 16 19 C -0.53 -31.33 10.04 67.96 0.68 -30.65 16 20 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 21 C 0.04 2.66 5.50 84.86 0.47 3.13 16 22 N -0.92 -56.35 13.97 21.65 0.30 -56.05 16 23 Si 0.92 45.54 27.74 68.60 1.90 47.45 16 24 H -0.26 -12.75 7.11 99.48 0.71 -12.05 16 25 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 27 O -0.22 -4.03 10.78 -3.79 -0.04 -4.07 16 28 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.11 0.24 8.14 -2.38 -0.02 0.22 16 30 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.20 2.48 8.06 -2.91 -0.02 2.45 16 32 H 0.06 0.62 8.13 -2.38 -0.02 0.60 16 33 H 0.09 0.35 7.45 -2.39 -0.02 0.33 16 34 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.35 4.61 8.46 -89.69 -0.76 3.85 16 36 H 0.09 0.68 7.71 -2.39 -0.02 0.66 16 37 H 0.07 0.34 7.44 -2.38 -0.02 0.32 16 38 H 0.11 1.42 7.84 -2.91 -0.02 1.40 16 39 H 0.13 1.43 7.84 -2.91 -0.02 1.41 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 1.40 7.79 -2.39 -0.02 1.39 16 42 H 0.42 7.80 8.46 -92.70 -0.78 7.01 16 43 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 44 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 45 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -80.93 400.48 -1.49 -82.42 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -0.57 Total: 15.88 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 7.13 Total: -4.98 kcal Atomic # 7 Polarization: -93.15 SS G_CDS: -8.81 Total: -101.96 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.09 Total: -28.74 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.90 Total: 47.45 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.06 kcal Total: -80.93 -1.49 -82.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715789230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.206 kcal (2) G-P(sol) polarization free energy of solvation -80.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds