Wall clock time and date at job start Tue Mar 31 2020 22:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33822 * 122.44824 * 2 1 4 4 S 1.70608 * 110.95380 * 180.25214 * 3 2 1 5 5 C 1.75832 * 91.56423 * 359.72864 * 4 3 2 6 6 C 1.46582 * 125.45897 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00283 * 180.02562 * 6 5 4 8 8 N 1.34775 * 119.99864 * 0.02562 * 6 5 4 9 9 C 1.46506 * 120.00009 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.46859 * 325.00487 * 9 8 6 11 11 C 1.52997 * 109.47203 * 85.00280 * 9 8 6 12 12 C 1.52999 * 109.46856 * 205.00076 * 9 8 6 13 13 N 1.46897 * 109.47533 * 55.00280 * 12 9 8 14 14 C 1.46901 * 110.99924 * 66.04052 * 13 12 9 15 15 C 1.46895 * 111.00477 * 189.99355 * 13 12 9 16 16 C 1.50705 * 109.47240 * 169.99353 * 15 13 12 17 17 O 1.21292 * 119.99791 * 0.02562 * 16 15 13 18 18 N 1.34776 * 120.00015 * 180.02562 * 16 15 13 19 19 C 1.37097 * 120.00290 * 180.02562 * 18 16 15 20 20 H 1.08008 * 119.99614 * 359.97438 * 19 18 16 21 21 C 1.38940 * 120.00395 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99999 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00290 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47133 * 89.99474 * 23 21 19 25 25 H 1.48502 * 109.47524 * 209.99921 * 23 21 19 26 26 H 1.48506 * 109.46954 * 329.99579 * 23 21 19 27 27 C 1.36648 * 109.08295 * 359.97438 * 5 4 3 28 28 H 1.08994 * 109.47243 * 270.25130 * 1 2 3 29 29 H 1.09002 * 109.47215 * 30.25524 * 1 2 3 30 30 H 1.09007 * 109.46672 * 150.25091 * 1 2 3 31 31 H 1.08003 * 124.51701 * 359.94510 * 3 2 1 32 32 H 0.97006 * 120.00332 * 0.02562 * 8 6 5 33 33 H 1.09003 * 109.47283 * 300.00335 * 11 9 8 34 34 H 1.09003 * 109.47308 * 59.99659 * 11 9 8 35 35 H 1.08999 * 109.47583 * 179.97438 * 11 9 8 36 36 H 1.09006 * 109.46785 * 174.99785 * 12 9 8 37 37 H 1.08998 * 109.47521 * 294.99764 * 12 9 8 38 38 H 1.08996 * 109.47364 * 60.00320 * 14 13 12 39 39 H 1.09003 * 109.47088 * 180.02562 * 14 13 12 40 40 H 1.09008 * 109.47271 * 299.99948 * 14 13 12 41 41 H 1.08996 * 109.47366 * 289.99838 * 15 13 12 42 42 H 1.09004 * 109.47085 * 50.00318 * 15 13 12 43 43 H 0.97002 * 119.99876 * 0.02562 * 18 16 15 44 44 H 0.96997 * 119.99702 * 180.02562 * 22 21 19 45 45 H 1.08002 * 123.34804 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 16 3.8969 0.7893 -0.0070 5 6 3.5937 -0.9426 -0.0017 6 6 4.6231 -1.9862 -0.0046 7 8 4.3003 -3.1595 -0.0008 8 7 5.9273 -1.6461 -0.0115 9 6 6.9562 -2.6891 -0.0150 10 1 6.6149 -3.5381 0.5773 11 6 7.2179 -3.1425 -1.4526 12 6 8.2479 -2.1330 0.5875 13 7 7.9705 -1.5885 1.9234 14 6 7.5805 -2.6545 2.8558 15 6 9.1242 -0.8372 2.4357 16 6 8.7249 -0.0931 3.6840 17 8 7.5910 -0.1806 4.1056 18 7 9.6279 0.6694 4.3318 19 6 9.2649 1.3459 5.4676 20 1 8.2552 1.2680 5.8431 21 6 10.1955 2.1325 6.1352 22 7 11.4240 2.2276 5.6781 23 14 9.7007 3.0547 7.6825 24 1 9.9441 2.1963 8.8696 25 1 10.5056 4.2975 7.7968 26 1 8.2590 3.4036 7.6110 27 6 2.2446 -1.1600 0.0057 28 1 -0.3633 0.0045 1.0276 29 1 -0.3634 0.8877 -0.5178 30 1 -0.3633 -0.8923 -0.5100 31 1 1.8024 2.1232 -0.0009 32 1 6.1847 -0.7109 -0.0141 33 1 6.2976 -3.5385 -1.8820 34 1 7.5591 -2.2935 -2.0450 35 1 7.9837 -3.9181 -1.4553 36 1 8.9852 -2.9320 0.6669 37 1 8.6370 -1.3421 -0.0536 38 1 8.3889 -3.3812 2.9357 39 1 7.3804 -2.2238 3.8369 40 1 6.6821 -3.1494 2.4866 41 1 9.9340 -1.5287 2.6682 42 1 9.4591 -0.1261 1.6804 43 1 10.5346 0.7397 3.9943 44 1 12.0738 2.7765 6.1444 45 1 1.8020 -2.1452 0.0097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716479332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:06 Heat of formation + Delta-G solvation = -37.289056 kcal Electronic energy + Delta-G solvation = -26892.368585 eV Core-core repulsion = 23036.594696 eV Total energy + Delta-G solvation = -3855.773889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.94680 -38.70764 -38.13165 -36.88014 -34.70152 -33.77334 -31.80011 -31.24328 -30.44713 -28.00428 -27.94376 -26.91646 -25.00863 -24.57935 -22.59721 -20.99057 -20.40304 -19.16011 -19.04134 -18.44959 -17.84019 -16.43567 -16.24689 -15.92356 -15.37736 -15.11249 -14.75010 -14.68325 -14.50163 -14.03129 -13.96847 -13.68615 -13.56960 -13.40832 -13.28737 -12.88952 -12.64359 -12.31549 -12.16690 -12.13030 -12.06213 -12.00148 -11.80136 -11.51156 -11.36550 -11.24340 -10.97803 -10.93294 -10.72862 -10.39722 -10.22370 -10.02087 -9.48126 -9.13714 -8.87074 -8.49399 -8.46153 -7.98686 -7.87744 -6.42449 -3.83085 0.44789 1.41466 1.82082 2.25559 3.11376 3.17032 3.25813 3.26613 3.31618 3.89702 3.94237 4.23261 4.68457 4.76109 4.81433 5.00738 5.06502 5.11604 5.15080 5.20558 5.25982 5.39692 5.41258 5.42122 5.50945 5.57529 5.68960 5.70506 5.72829 5.76232 5.92937 5.95635 5.98406 6.07686 6.18671 6.26323 6.27324 6.47857 6.58904 7.23285 7.34137 7.52668 7.54688 8.05957 8.20721 8.61473 9.17901 9.54103 10.06137 10.75367 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010747 B = 0.002938 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.870362 B = 9527.397616 C =11441.379817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.121 4.121 3 C -0.240 4.240 4 S 0.219 5.781 5 C -0.260 4.260 6 C 0.594 3.406 7 O -0.540 6.540 8 N -0.700 5.700 9 C 0.148 3.852 10 H 0.090 0.910 11 C -0.162 4.162 12 C 0.041 3.959 13 N -0.516 5.516 14 C 0.021 3.979 15 C 0.045 3.955 16 C 0.444 3.556 17 O -0.575 6.575 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C -0.058 4.058 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.167 0.833 32 H 0.402 0.598 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.015 0.985 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.087 0.913 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.361 -4.945 -16.209 20.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.134 4.134 3 C -0.378 4.378 4 S 0.489 5.511 5 C -0.381 4.381 6 C 0.380 3.620 7 O -0.420 6.420 8 N -0.351 5.351 9 C 0.043 3.957 10 H 0.108 0.892 11 C -0.221 4.221 12 C -0.088 4.088 13 N -0.240 5.240 14 C -0.127 4.127 15 C -0.086 4.086 16 C 0.229 3.771 17 O -0.459 6.459 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.092 4.092 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.184 0.816 32 H 0.237 0.763 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.033 0.967 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.106 0.894 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.211 -4.470 -15.881 19.946 hybrid contribution -0.022 -0.262 0.749 0.794 sum -11.232 -4.733 -15.131 19.430 Atomic orbital electron populations 1.20496 0.89550 1.02659 1.02434 1.18752 0.97851 0.91553 1.05232 1.25173 0.98934 1.03345 1.10361 1.83230 1.03395 0.97936 1.66572 1.24630 0.97981 0.97499 1.17950 1.16880 0.81778 0.87250 0.76046 1.90792 1.81831 1.18256 1.51098 1.45662 1.04699 1.10451 1.74240 1.20984 0.87166 0.91132 0.96402 0.89176 1.22160 1.02372 1.01539 0.96012 1.22512 0.95383 0.99254 0.91604 1.61566 1.35491 1.25528 1.01374 1.22564 0.98758 0.92212 0.99132 1.21883 0.91613 0.97477 0.97677 1.19725 0.86557 0.84399 0.86391 1.90499 1.20141 1.66519 1.68747 1.41867 1.12116 1.41785 1.24413 1.19686 0.98526 1.23181 1.01302 0.87947 1.25246 0.95001 0.98032 0.99665 1.69612 1.03311 1.40697 1.40806 0.85875 0.78703 0.78649 0.81175 1.20451 1.20941 1.19401 1.20597 0.91023 0.99812 0.97765 0.91158 0.91618 0.91412 0.81559 0.76255 0.91804 0.92264 0.91496 0.93319 0.90210 0.96681 0.88570 0.92116 0.93433 0.89442 0.77542 0.91905 0.83161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 10.13 36.01 0.36 -0.34 16 2 C -0.12 -1.26 5.78 -106.45 -0.62 -1.87 16 3 C -0.24 -2.42 10.67 29.18 0.31 -2.11 16 4 S 0.22 2.45 22.16 -107.50 -2.38 0.07 16 5 C -0.26 -3.45 6.45 -36.79 -0.24 -3.69 16 6 C 0.59 8.79 7.75 -12.90 -0.10 8.69 16 7 O -0.54 -9.39 16.50 5.19 0.09 -9.31 16 8 N -0.70 -9.12 4.80 -55.14 -0.26 -9.38 16 9 C 0.15 1.77 2.35 -67.93 -0.16 1.61 16 10 H 0.09 1.24 6.23 -51.93 -0.32 0.92 16 11 C -0.16 -1.56 9.48 37.16 0.35 -1.21 16 12 C 0.04 0.49 4.52 -3.83 -0.02 0.47 16 13 N -0.52 -8.14 4.22 -244.37 -1.03 -9.18 16 14 C 0.02 0.35 8.96 60.07 0.54 0.89 16 15 C 0.04 0.76 5.45 -4.98 -0.03 0.73 16 16 C 0.44 10.17 7.48 -10.98 -0.08 10.09 16 17 O -0.58 -15.13 13.91 5.55 0.08 -15.06 16 18 N -0.56 -14.02 5.29 -10.96 -0.06 -14.07 16 19 C -0.30 -8.18 9.68 -14.94 -0.14 -8.32 16 20 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.33 13.05 55.50 0.72 -23.60 16 23 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 C -0.06 -0.71 9.80 -40.44 -0.40 -1.11 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 30 H 0.07 0.46 8.13 -51.93 -0.42 0.03 16 31 H 0.17 1.28 8.06 -52.48 -0.42 0.86 16 32 H 0.40 4.96 7.72 -40.82 -0.31 4.65 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 37 H 0.08 0.82 7.93 -51.93 -0.41 0.41 16 38 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.10 1.95 5.82 -51.93 -0.30 1.65 16 40 H 0.06 0.98 6.58 -51.92 -0.34 0.64 16 41 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 42 H 0.09 1.31 7.93 -51.93 -0.41 0.90 16 43 H 0.39 9.30 7.90 -40.82 -0.32 8.97 16 44 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 45 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 389.68 15.07 5.87 5.87 Total: -1.00 -32.58 389.68 -8.89 -41.47 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -6.59 Total: 12.96 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -0.31 Total: 4.33 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.63 Total: -56.24 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: 0.16 Total: -24.36 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.38 Total: 0.07 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.58 -8.89 -41.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716479332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.185 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds