Wall clock time and date at job start Tue Mar 31 2020 22:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33822 * 122.44824 * 2 1 4 4 S 1.70608 * 110.95380 * 180.25214 * 3 2 1 5 5 C 1.75832 * 91.56423 * 359.72864 * 4 3 2 6 6 C 1.46582 * 125.45897 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00283 * 180.02562 * 6 5 4 8 8 N 1.34775 * 119.99864 * 0.02562 * 6 5 4 9 9 C 1.46506 * 120.00009 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.46859 * 325.00487 * 9 8 6 11 11 C 1.52997 * 109.47203 * 85.00280 * 9 8 6 12 12 C 1.52999 * 109.46856 * 205.00076 * 9 8 6 13 13 N 1.46897 * 109.47533 * 55.00280 * 12 9 8 14 14 C 1.46901 * 110.99924 * 66.04052 * 13 12 9 15 15 C 1.46895 * 111.00477 * 189.99355 * 13 12 9 16 16 C 1.50705 * 109.47240 * 169.99353 * 15 13 12 17 17 O 1.21292 * 119.99791 * 0.02562 * 16 15 13 18 18 N 1.34776 * 120.00015 * 180.02562 * 16 15 13 19 19 C 1.37097 * 120.00290 * 180.02562 * 18 16 15 20 20 H 1.08008 * 119.99614 * 359.97438 * 19 18 16 21 21 C 1.38940 * 120.00395 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99999 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00290 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47133 * 89.99474 * 23 21 19 25 25 H 1.48502 * 109.47524 * 209.99921 * 23 21 19 26 26 H 1.48506 * 109.46954 * 329.99579 * 23 21 19 27 27 C 1.36648 * 109.08295 * 359.97438 * 5 4 3 28 28 H 1.08994 * 109.47243 * 270.25130 * 1 2 3 29 29 H 1.09002 * 109.47215 * 30.25524 * 1 2 3 30 30 H 1.09007 * 109.46672 * 150.25091 * 1 2 3 31 31 H 1.08003 * 124.51701 * 359.94510 * 3 2 1 32 32 H 0.97006 * 120.00332 * 0.02562 * 8 6 5 33 33 H 1.09003 * 109.47283 * 300.00335 * 11 9 8 34 34 H 1.09003 * 109.47308 * 59.99659 * 11 9 8 35 35 H 1.08999 * 109.47583 * 179.97438 * 11 9 8 36 36 H 1.09006 * 109.46785 * 174.99785 * 12 9 8 37 37 H 1.08998 * 109.47521 * 294.99764 * 12 9 8 38 38 H 1.08996 * 109.47364 * 60.00320 * 14 13 12 39 39 H 1.09003 * 109.47088 * 180.02562 * 14 13 12 40 40 H 1.09008 * 109.47271 * 299.99948 * 14 13 12 41 41 H 1.08996 * 109.47366 * 289.99838 * 15 13 12 42 42 H 1.09004 * 109.47085 * 50.00318 * 15 13 12 43 43 H 0.97002 * 119.99876 * 0.02562 * 18 16 15 44 44 H 0.96997 * 119.99702 * 180.02562 * 22 21 19 45 45 H 1.08002 * 123.34804 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 16 3.8969 0.7893 -0.0070 5 6 3.5937 -0.9426 -0.0017 6 6 4.6231 -1.9862 -0.0046 7 8 4.3003 -3.1595 -0.0008 8 7 5.9273 -1.6461 -0.0115 9 6 6.9562 -2.6891 -0.0150 10 1 6.6149 -3.5381 0.5773 11 6 7.2179 -3.1425 -1.4526 12 6 8.2479 -2.1330 0.5875 13 7 7.9705 -1.5885 1.9234 14 6 7.5805 -2.6545 2.8558 15 6 9.1242 -0.8372 2.4357 16 6 8.7249 -0.0931 3.6840 17 8 7.5910 -0.1806 4.1056 18 7 9.6279 0.6694 4.3318 19 6 9.2649 1.3459 5.4676 20 1 8.2552 1.2680 5.8431 21 6 10.1955 2.1325 6.1352 22 7 11.4240 2.2276 5.6781 23 14 9.7007 3.0547 7.6825 24 1 9.9441 2.1963 8.8696 25 1 10.5056 4.2975 7.7968 26 1 8.2590 3.4036 7.6110 27 6 2.2446 -1.1600 0.0057 28 1 -0.3633 0.0045 1.0276 29 1 -0.3634 0.8877 -0.5178 30 1 -0.3633 -0.8923 -0.5100 31 1 1.8024 2.1232 -0.0009 32 1 6.1847 -0.7109 -0.0141 33 1 6.2976 -3.5385 -1.8820 34 1 7.5591 -2.2935 -2.0450 35 1 7.9837 -3.9181 -1.4553 36 1 8.9852 -2.9320 0.6669 37 1 8.6370 -1.3421 -0.0536 38 1 8.3889 -3.3812 2.9357 39 1 7.3804 -2.2238 3.8369 40 1 6.6821 -3.1494 2.4866 41 1 9.9340 -1.5287 2.6682 42 1 9.4591 -0.1261 1.6804 43 1 10.5346 0.7397 3.9943 44 1 12.0738 2.7765 6.1444 45 1 1.8020 -2.1452 0.0097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716479332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:06 Heat of formation + Delta-G solvation = -60.593117 kcal Electronic energy + Delta-G solvation = -26893.379125 eV Core-core repulsion = 23036.594696 eV Total energy + Delta-G solvation = -3856.784429 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.04362 -40.28764 -39.12393 -38.18830 -36.11792 -35.52910 -33.24773 -32.77005 -31.31260 -29.48187 -28.67864 -28.01753 -26.66781 -25.71255 -23.86341 -21.98737 -21.45788 -20.93469 -19.91432 -19.82450 -19.40835 -17.83927 -17.38105 -17.01153 -16.67649 -16.53610 -16.28762 -16.01655 -15.64489 -15.58365 -15.11718 -14.94745 -14.75306 -14.57571 -14.17001 -14.04585 -13.65727 -13.56678 -13.39647 -13.18098 -13.07220 -12.90316 -12.88052 -12.80293 -12.74339 -12.65524 -12.44869 -12.37267 -12.11794 -11.85220 -11.73811 -11.43625 -11.16546 -10.27386 -10.16419 -9.96608 -9.78792 -9.34028 -9.21154 -8.44430 -5.92169 -0.48089 0.51407 0.95730 1.36293 1.38311 1.42177 1.54364 2.09188 2.10206 2.22349 2.29613 2.75727 3.23063 3.44581 3.71844 3.84551 4.06452 4.13852 4.20371 4.23162 4.34542 4.39239 4.41570 4.54242 4.54642 4.58809 4.68258 4.70141 4.75879 4.80036 4.84916 4.87979 5.03152 5.06020 5.17053 5.28259 5.39985 5.43442 5.47761 5.48291 5.88504 6.06572 6.18701 6.46915 6.64491 7.12836 7.16775 7.61079 8.17680 8.73028 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010747 B = 0.002938 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.870362 B = 9527.397616 C =11441.379817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.130 4.130 3 C -0.233 4.233 4 S 0.225 5.775 5 C -0.293 4.293 6 C 0.589 3.411 7 O -0.578 6.578 8 N -0.695 5.695 9 C 0.146 3.854 10 H 0.068 0.932 11 C -0.152 4.152 12 C 0.046 3.954 13 N -0.532 5.532 14 C 0.031 3.969 15 C 0.058 3.942 16 C 0.442 3.558 17 O -0.614 6.614 18 N -0.576 5.576 19 C -0.328 4.328 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.989 3.011 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.274 1.274 27 C -0.063 4.063 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.195 0.805 32 H 0.406 0.594 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.033 0.967 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.117 0.883 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.872 -4.051 -17.386 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.142 4.142 3 C -0.370 4.370 4 S 0.495 5.505 5 C -0.413 4.413 6 C 0.376 3.624 7 O -0.460 6.460 8 N -0.345 5.345 9 C 0.041 3.959 10 H 0.086 0.914 11 C -0.211 4.211 12 C -0.081 4.081 13 N -0.256 5.256 14 C -0.117 4.117 15 C -0.073 4.073 16 C 0.229 3.771 17 O -0.500 6.500 18 N -0.213 5.213 19 C -0.458 4.458 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.813 3.187 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.097 4.097 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.212 0.788 32 H 0.242 0.758 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.122 0.878 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.135 0.865 43 H 0.230 0.770 44 H 0.086 0.914 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.683 -3.571 -17.085 20.464 hybrid contribution -0.232 -0.557 1.081 1.238 sum -10.916 -4.129 -16.004 19.807 Atomic orbital electron populations 1.20564 0.87416 1.03917 1.03077 1.19018 0.99393 0.90854 1.04962 1.25556 0.98145 1.04549 1.08790 1.83126 1.04602 0.96310 1.66488 1.24652 0.98126 0.98453 1.20105 1.17159 0.82553 0.87139 0.75532 1.90755 1.82444 1.19715 1.53115 1.45708 1.04494 1.10921 1.73357 1.21084 0.86892 0.90189 0.97705 0.91401 1.22076 1.02194 1.02656 0.94180 1.22601 0.95591 1.00669 0.89280 1.61474 1.35549 1.25810 1.02767 1.22334 0.99521 0.92505 0.97317 1.21766 0.92287 0.97972 0.95281 1.20822 0.85588 0.83253 0.87405 1.90486 1.21899 1.67432 1.70133 1.41926 1.12664 1.42446 1.24295 1.19608 0.97916 1.25122 1.03163 0.90527 1.25964 0.94883 0.98259 1.02102 1.69667 1.03806 1.41000 1.41772 0.84991 0.78166 0.77829 0.77750 1.19884 1.19548 1.19837 1.20820 0.91058 1.00579 0.97248 0.90736 0.89837 0.90760 0.78831 0.75826 0.93525 0.90619 0.89495 0.91123 0.87760 0.94815 0.92744 0.92276 0.91345 0.86470 0.77028 0.91401 0.83465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.22 10.13 71.24 0.72 -0.50 16 2 C -0.13 -2.57 5.78 -21.05 -0.12 -2.69 16 3 C -0.23 -4.31 10.67 66.82 0.71 -3.60 16 4 S 0.23 4.91 22.16 -56.49 -1.25 3.65 16 5 C -0.29 -7.93 6.45 24.08 0.16 -7.78 16 6 C 0.59 17.96 7.75 86.42 0.67 18.63 16 7 O -0.58 -21.02 16.50 -4.33 -0.07 -21.09 16 8 N -0.70 -17.97 4.80 -446.60 -2.14 -20.11 16 9 C 0.15 3.32 2.35 44.99 0.11 3.42 16 10 H 0.07 1.87 6.23 -2.39 -0.01 1.86 16 11 C -0.15 -2.65 9.48 71.98 0.68 -1.97 16 12 C 0.05 0.96 4.52 86.30 0.39 1.35 16 13 N -0.53 -16.03 4.22 -927.05 -3.92 -19.94 16 14 C 0.03 1.04 8.96 127.69 1.14 2.19 16 15 C 0.06 1.85 5.45 85.56 0.47 2.32 16 16 C 0.44 20.32 7.48 87.66 0.66 20.97 16 17 O -0.61 -33.22 13.91 -3.07 -0.04 -33.26 16 18 N -0.58 -28.79 5.29 -306.98 -1.62 -30.42 16 19 C -0.33 -18.42 9.68 84.04 0.81 -17.60 16 20 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 21 C -0.01 -0.66 5.50 84.92 0.47 -0.20 16 22 N -0.92 -49.15 13.05 21.66 0.28 -48.87 16 23 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 C -0.06 -1.55 9.80 21.72 0.21 -1.33 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 0.82 8.12 -2.39 -0.02 0.81 16 30 H 0.07 0.90 8.13 -2.38 -0.02 0.88 16 31 H 0.19 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.41 9.75 7.72 -92.70 -0.72 9.04 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.23 8.12 -2.38 -0.02 1.21 16 37 H 0.10 1.71 7.93 -2.39 -0.02 1.69 16 38 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.05 2.28 5.82 -2.39 -0.01 2.26 16 40 H 0.06 1.95 6.58 -2.38 -0.02 1.93 16 41 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 42 H 0.12 3.10 7.93 -2.38 -0.02 3.09 16 43 H 0.40 18.73 7.90 -92.71 -0.73 18.00 16 44 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 45 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -72.95 389.68 -0.08 -73.04 By element: Atomic # 1 Polarization: 39.42 SS G_CDS: -0.42 Total: 39.00 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 7.07 Total: 13.22 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -7.40 Total: -119.34 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -0.11 Total: -54.36 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 4.91 SS G_CDS: -1.25 Total: 3.65 kcal Total: -72.95 -0.08 -73.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716479332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.445 kcal (2) G-P(sol) polarization free energy of solvation -72.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds