Wall clock time and date at job start Tue Mar 31 2020 22:46:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 N 1.34482 * 126.16594 * 2 1
4 4 C 1.30250 * 108.70165 * 180.02562 * 3 2 1
5 5 C 1.50693 * 125.61980 * 179.97438 * 4 3 2
6 6 N 1.46898 * 109.47244 * 90.00031 * 5 4 3
7 7 C 1.46904 * 111.00580 * 186.95999 * 6 5 4
8 8 C 1.52999 * 115.55897 * 319.90056 * 7 6 5
9 9 N 1.46502 * 109.46938 * 278.64886 * 8 7 6
10 10 C 1.34782 * 119.99740 * 184.97956 * 9 8 7
11 11 O 1.21283 * 119.99807 * 359.97438 * 10 9 8
12 12 C 1.50703 * 119.99980 * 179.97438 * 10 9 8
13 13 S 1.80998 * 109.47118 * 180.02562 * 12 10 9
14 14 C 1.76192 * 99.99869 * 180.02562 * 13 12 10
15 15 H 1.08004 * 120.00634 * 0.02562 * 14 13 12
16 16 C 1.38804 * 120.00189 * 180.02562 * 14 13 12
17 17 N 1.31625 * 120.00168 * 179.97438 * 16 14 13
18 18 Si 1.86797 * 119.99701 * 359.97438 * 16 14 13
19 19 H 1.48502 * 109.47261 * 89.99888 * 18 16 14
20 20 H 1.48502 * 109.47260 * 210.00314 * 18 16 14
21 21 H 1.48503 * 109.47312 * 330.00126 * 18 16 14
22 22 C 1.52998 * 117.49637 * 105.58311 * 7 6 5
23 23 C 1.52999 * 117.50041 * 174.20898 * 7 6 5
24 24 O 1.33966 * 108.76175 * 0.23045 * 4 3 2
25 25 C 1.34324 * 126.16447 * 180.02562 * 2 1 3
26 26 C 1.50695 * 126.44604 * 359.97438 * 25 2 1
27 27 H 1.08998 * 109.46964 * 89.96952 * 1 2 3
28 28 H 1.08998 * 109.47088 * 209.97086 * 1 2 3
29 29 H 1.09008 * 109.46773 * 329.97246 * 1 2 3
30 30 H 1.09000 * 109.47299 * 329.99950 * 5 4 3
31 31 H 1.09005 * 109.47245 * 210.00158 * 5 4 3
32 32 H 1.00896 * 110.99975 * 310.91908 * 6 5 4
33 33 H 1.09000 * 109.47348 * 38.64630 * 8 7 6
34 34 H 1.08995 * 109.46979 * 158.64598 * 8 7 6
35 35 H 0.96991 * 120.00029 * 4.97840 * 9 8 7
36 36 H 1.09001 * 109.46773 * 300.00148 * 12 10 9
37 37 H 1.09003 * 109.46632 * 60.00048 * 12 10 9
38 38 H 0.97003 * 119.99947 * 179.97438 * 17 16 14
39 39 H 1.09003 * 117.49980 * 214.98172 * 22 7 6
40 40 H 1.09003 * 117.49858 * 0.02562 * 22 7 6
41 41 H 1.08995 * 117.50073 * 0.02562 * 23 7 6
42 42 H 1.08996 * 117.49743 * 144.99843 * 23 7 6
43 43 H 1.09006 * 109.47410 * 90.00300 * 26 25 2
44 44 H 1.08999 * 109.47652 * 210.00688 * 26 25 2
45 45 H 1.09002 * 109.47409 * 330.00317 * 26 25 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3007 1.0857 0.0000
4 6 3.5431 0.6948 -0.0006
5 6 4.7479 1.5999 -0.0013
6 7 5.1401 1.8943 1.3834
7 6 6.2068 2.9035 1.4254
8 6 7.2898 2.7643 0.3537
9 7 8.2631 1.7521 0.7715
10 6 9.3654 1.5300 0.0285
11 8 9.5514 2.1678 -0.9862
12 6 10.3669 0.4893 0.4586
13 16 11.7252 0.4289 -0.7362
14 6 12.7170 -0.8324 -0.0084
15 1 12.4010 -1.3057 0.9095
16 6 13.9046 -1.2179 -0.6147
17 7 14.6459 -2.1598 -0.0707
18 14 14.4510 -0.3999 -2.2027
19 1 15.2866 0.7863 -1.8865
20 1 15.2434 -1.3631 -3.0085
21 1 13.2571 0.0276 -2.9755
22 6 5.8236 4.3186 1.8628
23 6 6.6354 3.4217 2.7997
24 8 3.5734 -0.6445 -0.0060
25 6 2.2997 -1.0844 -0.0005
26 6 1.8493 -2.5225 -0.0006
27 1 -0.3633 0.0005 -1.0276
28 1 -0.3633 -0.8902 0.5134
29 1 -0.3633 0.8898 0.5143
30 1 4.5036 2.5296 -0.5152
31 1 5.5728 1.1065 -0.5155
32 1 4.3442 2.1864 1.9303
33 1 6.8322 2.4613 -0.5881
34 1 7.7948 3.7210 0.2210
35 1 8.1141 1.2418 1.5828
36 1 10.7597 0.7476 1.4420
37 1 9.8806 -0.4851 0.5060
38 1 15.4756 -2.4294 -0.4946
39 1 6.3430 5.1505 1.3871
40 1 4.7800 4.5007 2.1199
41 1 6.1262 3.0136 3.6727
42 1 7.6889 3.6631 2.9404
43 1 1.7404 -2.8691 -1.0283
44 1 2.5901 -3.1354 0.5130
45 1 0.8916 -2.6034 0.5135
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001716676201.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:46:48
Heat of formation + Delta-G solvation = -19.178906 kcal
Electronic energy + Delta-G solvation = -26046.846150 eV
Core-core repulsion = 22191.857576 eV
Total energy + Delta-G solvation = -3854.988574 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-44.42013 -40.92631 -39.53847 -36.26026 -35.57757 -35.08053 -34.66485 -33.33838
-31.33581 -30.09022 -28.38252 -27.97103 -27.45552 -25.17151 -23.44054 -22.72281
-21.75092 -21.63541 -20.96330 -19.80848 -18.14913 -18.00227 -17.78527 -17.41665
-17.10618 -16.89716 -16.44873 -16.26944 -15.78110 -15.53470 -14.96954 -14.93626
-14.77972 -14.56303 -14.46436 -14.30947 -14.15990 -13.92400 -13.78783 -13.35904
-13.31497 -13.17794 -13.07939 -12.99776 -12.86898 -12.64512 -12.42811 -12.08299
-12.01869 -11.85090 -11.61850 -11.35212 -11.16673 -11.00796 -10.53381 -10.14071
-9.64609 -9.36507 -8.98818 -8.51071 -6.21678 0.31968 0.99071 1.31699
1.46698 1.47937 1.55689 1.56888 1.63409 2.14327 2.25625 2.64158
2.71890 2.86988 2.88587 3.16048 3.50298 3.61994 3.73665 3.83202
3.87423 3.99755 4.09696 4.21040 4.23542 4.34158 4.48399 4.53945
4.55033 4.57786 4.58795 4.67431 4.75703 4.77311 4.86286 4.95223
5.01517 5.04122 5.13449 5.21606 5.37322 5.39913 5.68201 5.71232
6.08127 6.12063 6.47372 6.65277 6.93956 7.18413 8.61334
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.012865 B = 0.002264 C = 0.002026
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2175.939332 B =12361.943489 C =13820.162396
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 C -0.039 4.039
3 N -0.492 5.492
4 C 0.179 3.821
5 C 0.159 3.841
6 N -0.642 5.642
7 C 0.028 3.972
8 C 0.158 3.842
9 N -0.704 5.704
10 C 0.536 3.464
11 O -0.563 6.563
12 C -0.111 4.111
13 S -0.173 6.173
14 C -0.529 4.529
15 H 0.061 0.939
16 C 0.044 3.956
17 N -0.917 5.917
18 Si 0.915 3.085
19 H -0.262 1.262
20 H -0.260 1.260
21 H -0.237 1.237
22 C -0.185 4.185
23 C -0.150 4.150
24 O -0.211 6.211
25 C -0.054 4.054
26 C -0.069 4.069
27 H 0.082 0.918
28 H 0.099 0.901
29 H 0.072 0.928
30 H 0.089 0.911
31 H 0.098 0.902
32 H 0.356 0.644
33 H 0.069 0.931
34 H 0.078 0.922
35 H 0.416 0.584
36 H 0.113 0.887
37 H 0.110 0.890
38 H 0.277 0.723
39 H 0.106 0.894
40 H 0.110 0.890
41 H 0.110 0.890
42 H 0.104 0.896
43 H 0.097 0.903
44 H 0.080 0.920
45 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -31.553 7.231 5.010 32.756
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.159 4.159
3 N -0.224 5.224
4 C -0.028 4.028
5 C 0.030 3.970
6 N -0.274 5.274
7 C -0.064 4.064
8 C 0.034 3.966
9 N -0.357 5.357
10 C 0.322 3.678
11 O -0.441 6.441
12 C -0.262 4.262
13 S 0.053 5.947
14 C -0.676 4.676
15 H 0.080 0.920
16 C -0.161 4.161
17 N -0.555 5.555
18 Si 0.737 3.263
19 H -0.186 1.186
20 H -0.184 1.184
21 H -0.161 1.161
22 C -0.225 4.225
23 C -0.188 4.188
24 O -0.098 6.098
25 C -0.107 4.107
26 C -0.125 4.125
27 H 0.101 0.899
28 H 0.117 0.883
29 H 0.091 0.909
30 H 0.107 0.893
31 H 0.116 0.884
32 H 0.177 0.823
33 H 0.087 0.913
34 H 0.096 0.904
35 H 0.253 0.747
36 H 0.131 0.869
37 H 0.128 0.872
38 H 0.086 0.914
39 H 0.124 0.876
40 H 0.128 0.872
41 H 0.128 0.872
42 H 0.122 0.878
43 H 0.115 0.885
44 H 0.099 0.901
45 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges -30.836 8.210 3.367 32.087
hybrid contribution 0.308 -0.966 0.874 1.339
sum -30.528 7.244 4.242 31.661
Atomic orbital electron populations
1.20230 0.84083 1.04369 1.03697 1.22131 0.99526 0.87312 1.06939
1.70319 1.00859 1.32565 1.18633 1.26173 0.95300 0.79440 1.01862
1.20266 0.89466 0.95004 0.92274 1.60301 1.12963 1.44331 1.09808
1.21567 0.94748 0.91829 0.98215 1.20910 0.87572 0.92287 0.95867
1.45683 1.20997 1.40743 1.28322 1.19909 0.81998 0.82772 0.83141
1.90691 1.76819 1.50192 1.26436 1.23262 0.97473 1.01927 1.03564
1.84664 1.23082 1.51007 1.35928 1.22467 1.09305 1.23081 1.12789
0.92027 1.25586 0.95253 0.94686 1.00614 1.70018 1.14411 1.29834
1.41233 0.85852 0.80816 0.79372 0.80235 1.18621 1.18385 1.16059
1.23740 1.02085 0.93300 1.03392 1.23199 1.01699 1.01328 0.92547
1.84431 1.31376 1.24313 1.69638 1.24058 0.80073 1.00110 1.06459
1.20517 1.03045 0.83925 1.04997 0.89911 0.88274 0.90899 0.89295
0.88355 0.82334 0.91330 0.90425 0.74666 0.86854 0.87166 0.91382
0.87596 0.87166 0.87202 0.87778 0.88503 0.90090 0.86441
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.71 10.22 71.24 0.73 0.02 16
2 C -0.04 -0.74 7.11 41.26 0.29 -0.45 16
3 N -0.49 -11.17 11.29 -291.99 -3.30 -14.46 16
4 C 0.18 3.97 7.78 88.34 0.69 4.66 16
5 C 0.16 2.86 5.27 85.56 0.45 3.31 16
6 N -0.64 -10.05 6.80 -474.15 -3.22 -13.28 16
7 C 0.03 0.41 2.21 3.53 0.01 0.42 16
8 C 0.16 3.15 5.31 86.38 0.46 3.61 16
9 N -0.70 -16.69 5.50 -463.05 -2.55 -19.23 16
10 C 0.54 18.26 7.85 87.66 0.69 18.95 16
11 O -0.56 -23.63 15.86 -3.04 -0.05 -23.68 16
12 C -0.11 -4.22 6.16 71.24 0.44 -3.78 16
13 S -0.17 -8.79 18.55 -56.49 -1.05 -9.84 16
14 C -0.53 -30.99 10.04 67.96 0.68 -30.31 16
15 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16
16 C 0.04 2.60 5.50 84.86 0.47 3.06 16
17 N -0.92 -56.15 13.97 21.65 0.30 -55.85 16
18 Si 0.92 45.24 27.74 68.60 1.90 47.15 16
19 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16
20 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16
21 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16
22 C -0.19 -2.06 9.89 30.60 0.30 -1.76 16
23 C -0.15 -1.82 10.12 30.60 0.31 -1.51 16
24 O -0.21 -5.04 10.78 -3.79 -0.04 -5.08 16
25 C -0.05 -1.00 7.39 24.79 0.18 -0.82 16
26 C -0.07 -0.64 10.22 71.23 0.73 0.08 16
27 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16
28 H 0.10 0.52 7.16 -2.39 -0.02 0.51 16
29 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16
30 H 0.09 1.42 8.11 -2.39 -0.02 1.40 16
31 H 0.10 1.95 6.80 -2.38 -0.02 1.93 16
32 H 0.36 5.15 8.47 -89.70 -0.76 4.39 16
33 H 0.07 1.46 5.96 -2.39 -0.01 1.45 16
34 H 0.08 1.64 7.93 -2.39 -0.02 1.62 16
35 H 0.42 8.17 8.48 -92.72 -0.79 7.38 16
36 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16
37 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16
38 H 0.28 15.66 8.31 -92.71 -0.77 14.88 16
39 H 0.11 1.15 8.08 -2.39 -0.02 1.13 16
40 H 0.11 1.02 8.12 -2.39 -0.02 1.00 16
41 H 0.11 1.18 8.14 -2.39 -0.02 1.17 16
42 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16
43 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16
44 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16
45 H 0.12 0.46 7.17 -2.39 -0.02 0.45 16
Total: -1.00 -77.72 394.24 -2.13 -79.85
By element:
Atomic # 1 Polarization: 19.52 SS G_CDS: -0.55 Total: 18.97 kcal
Atomic # 6 Polarization: -10.96 SS G_CDS: 6.42 Total: -4.54 kcal
Atomic # 7 Polarization: -94.06 SS G_CDS: -8.76 Total: -102.82 kcal
Atomic # 8 Polarization: -28.67 SS G_CDS: -0.09 Total: -28.76 kcal
Atomic # 14 Polarization: 45.24 SS G_CDS: 1.90 Total: 47.15 kcal
Atomic # 16 Polarization: -8.79 SS G_CDS: -1.05 Total: -9.84 kcal
Total: -77.72 -2.13 -79.85 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001716676201.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.667 kcal
(2) G-P(sol) polarization free energy of solvation -77.719 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.052 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.127 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.846 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.179 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds