Wall clock time and date at job start Tue Mar 31 2020 23:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29428 * 124.80620 * 2 1 4 4 C 1.30936 * 117.36626 * 180.02562 * 3 2 1 5 5 C 1.50701 * 122.90602 * 180.02562 * 4 3 2 6 6 C 1.35669 * 114.19264 * 359.97438 * 4 3 2 7 7 C 1.46679 * 126.13011 * 180.02562 * 6 4 3 8 8 O 1.21685 * 120.00629 * 359.97438 * 7 6 4 9 9 N 1.34782 * 119.99828 * 179.72435 * 7 6 4 10 10 C 1.46492 * 120.00296 * 180.27106 * 9 7 6 11 11 C 1.52998 * 109.47302 * 176.56458 * 10 9 7 12 12 N 1.46500 * 109.53851 * 54.54947 * 11 10 9 13 13 C 1.36933 * 120.00380 * 62.02385 * 12 11 10 14 14 H 1.08003 * 120.00149 * 354.00595 * 13 12 11 15 15 C 1.38816 * 120.00177 * 174.01095 * 13 12 11 16 16 N 1.31614 * 119.99786 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99926 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46905 * 89.99877 * 17 15 13 19 19 H 1.48500 * 109.47232 * 209.99723 * 17 15 13 20 20 H 1.48499 * 109.47390 * 329.99991 * 17 15 13 21 21 C 1.53176 * 109.54507 * 294.37183 * 11 10 9 22 22 C 1.53104 * 109.15503 * 183.23961 * 21 11 10 23 23 O 1.42907 * 109.48941 * 57.47573 * 22 21 11 24 24 C 1.42906 * 114.09146 * 298.88604 * 23 22 21 25 25 C 1.53090 * 109.41604 * 61.16360 * 24 23 22 26 26 S 1.70954 * 124.80273 * 180.31784 * 2 1 3 27 27 H 1.08998 * 109.47146 * 89.97072 * 1 2 3 28 28 H 1.09000 * 109.47423 * 209.98003 * 1 2 3 29 29 H 1.09008 * 109.46942 * 329.97617 * 1 2 3 30 30 H 1.09006 * 109.47219 * 269.95674 * 5 4 3 31 31 H 1.08997 * 109.47386 * 29.96094 * 5 4 3 32 32 H 1.09005 * 109.47236 * 149.96009 * 5 4 3 33 33 H 0.97007 * 119.99699 * 0.27385 * 9 7 6 34 34 H 1.09000 * 109.47532 * 296.57371 * 10 9 7 35 35 H 1.09004 * 109.46730 * 56.56807 * 10 9 7 36 36 H 0.97005 * 120.00049 * 242.01881 * 12 11 10 37 37 H 0.97004 * 119.99723 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.52354 * 303.05375 * 21 11 10 39 39 H 1.08990 * 109.52280 * 63.24458 * 21 11 10 40 40 H 1.09002 * 109.40748 * 297.49371 * 22 21 11 41 41 H 1.09002 * 109.49138 * 177.50176 * 22 21 11 42 42 H 1.08993 * 109.48233 * 301.17388 * 24 23 22 43 43 H 1.09002 * 109.48609 * 181.14368 * 24 23 22 44 44 H 1.09003 * 109.52142 * 182.48521 * 25 24 23 45 45 H 1.09000 * 109.57741 * 62.31902 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0627 0.0000 4 6 3.5441 0.8932 -0.0005 5 6 4.5197 2.0417 0.0000 6 6 3.9352 -0.4059 -0.0004 7 6 5.3189 -0.8926 -0.0004 8 8 6.2426 -0.1004 -0.0009 9 7 5.5673 -2.2173 0.0053 10 6 6.9492 -2.7035 0.0113 11 6 6.9522 -4.2307 0.1035 12 7 6.1336 -4.7883 -0.9760 13 6 6.4822 -4.5706 -2.2822 14 1 7.3026 -3.9093 -2.5191 15 6 5.7813 -5.1998 -3.3018 16 7 4.7819 -6.0061 -3.0130 17 14 6.2565 -4.9023 -5.0836 18 1 7.2707 -5.9043 -5.4994 19 1 5.0533 -5.0293 -5.9447 20 1 6.8234 -3.5369 -5.2234 21 6 6.3798 -4.6635 1.4567 22 6 6.4616 -6.1880 1.5723 23 8 7.8192 -6.6058 1.4155 24 6 8.3904 -6.2700 0.1494 25 6 8.3882 -4.7488 -0.0225 26 16 2.4827 -1.4037 -0.0078 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3634 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 4.7553 2.3189 -1.0276 31 1 4.0766 2.8947 0.5139 32 1 5.4332 1.7424 0.5140 33 1 4.8309 -2.8489 0.0053 34 1 7.4474 -2.3938 -0.9074 35 1 7.4771 -2.2867 0.8691 36 1 5.3445 -5.3118 -0.7654 37 1 4.2923 -6.4461 -3.7256 38 1 6.9583 -4.2070 2.2598 39 1 5.3396 -4.3466 1.5303 40 1 5.8489 -6.6437 0.7944 41 1 6.0966 -6.4986 2.5513 42 1 7.8030 -6.7267 -0.6470 43 1 9.4149 -6.6395 0.1031 44 1 8.7829 -4.4928 -1.0058 45 1 9.0088 -4.2931 0.7491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716909146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:17 Heat of formation + Delta-G solvation = -32.788724 kcal Electronic energy + Delta-G solvation = -28221.689698 eV Core-core repulsion = 24366.110958 eV Total energy + Delta-G solvation = -3855.578740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.28247 -39.52766 -38.53668 -35.86364 -33.57673 -32.99763 -32.25126 -30.67172 -29.32519 -29.22865 -28.70145 -26.40695 -24.13731 -23.15266 -22.96913 -22.42874 -21.03131 -19.46920 -18.56857 -17.87751 -17.29948 -16.72529 -15.73413 -15.58533 -15.50755 -15.30663 -14.96462 -14.45011 -14.36089 -14.24385 -13.88920 -13.74783 -13.44189 -13.33736 -13.24815 -12.71281 -12.57111 -12.36165 -12.24324 -12.08823 -12.03448 -11.77994 -11.49701 -11.27132 -10.96353 -10.93160 -10.81872 -10.39157 -10.07922 -9.93597 -9.80513 -9.74466 -9.54731 -9.47095 -9.25115 -8.83171 -8.77345 -8.51161 -7.15856 -5.91888 -3.22740 0.28475 1.19649 1.61351 2.48596 3.34583 3.37665 3.41930 3.42715 3.51033 3.95196 4.36171 4.47073 4.80068 5.01443 5.10604 5.16159 5.19423 5.21515 5.24731 5.33429 5.47612 5.51562 5.59258 5.61847 5.73555 5.75217 5.85085 5.89809 5.96991 6.04583 6.07546 6.15936 6.27530 6.36055 6.39089 6.48795 6.52649 6.68694 6.75117 6.87723 7.59780 7.60513 7.69946 7.85517 8.25047 8.46243 9.37972 9.87449 10.24313 11.29667 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010168 B = 0.004166 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.943294 B = 6719.245108 C = 7697.275145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.050 3.950 3 N -0.481 5.481 4 C 0.141 3.859 5 C -0.086 4.086 6 C -0.292 4.292 7 C 0.592 3.408 8 O -0.538 6.538 9 N -0.693 5.693 10 C 0.118 3.882 11 C 0.188 3.812 12 N -0.713 5.713 13 C -0.238 4.238 14 H 0.070 0.930 15 C -0.004 4.004 16 N -0.928 5.928 17 Si 0.900 3.100 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.152 4.152 22 C 0.066 3.934 23 O -0.393 6.393 24 C 0.070 3.930 25 C -0.151 4.151 26 S 0.178 5.822 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.401 0.599 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.127 7.088 9.547 12.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.225 4.225 3 N -0.197 5.197 4 C 0.003 3.997 5 C -0.145 4.145 6 C -0.416 4.416 7 C 0.376 3.624 8 O -0.418 6.418 9 N -0.343 5.343 10 C -0.008 4.008 11 C 0.096 3.904 12 N -0.355 5.355 13 C -0.369 4.369 14 H 0.088 0.912 15 C -0.200 4.200 16 N -0.576 5.576 17 Si 0.732 3.268 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.190 4.190 22 C -0.011 4.011 23 O -0.312 6.312 24 C -0.007 4.007 25 C -0.192 4.192 26 S 0.435 5.565 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.237 0.763 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.817 6.920 9.503 12.704 hybrid contribution -0.045 0.501 -1.460 1.544 sum -4.862 7.421 8.043 11.975 Atomic orbital electron populations 1.20500 0.84860 1.04370 1.04216 1.27355 1.02075 0.91637 1.01468 1.66069 1.04466 1.31448 1.17738 1.20611 0.89829 0.93681 0.95609 1.20626 0.96965 0.93342 1.03604 1.25579 0.98377 0.97164 1.20498 1.16642 0.85708 0.82914 0.77107 1.90737 1.44271 1.55111 1.51687 1.45668 1.10226 1.05504 1.72898 1.21891 0.81379 0.96242 1.01277 1.19846 0.91845 0.90223 0.88496 1.42493 1.29446 1.62686 1.00883 1.19056 1.13504 1.21878 0.82468 0.91168 1.24687 0.98470 0.99158 0.97728 1.69638 1.22926 1.33412 1.31597 0.86297 0.77395 0.77768 0.85390 1.21619 1.21822 1.20784 1.22359 1.01430 0.97583 0.97614 1.22455 0.83991 0.93404 1.01212 1.87800 1.26862 1.80058 1.36453 1.22452 0.97854 0.94611 0.85742 1.22441 0.97587 0.96971 1.02156 1.84167 0.96253 1.10523 1.65508 0.89221 0.89775 0.89128 0.90304 0.91113 0.88147 0.76307 0.91322 0.92353 0.78071 0.93425 0.91143 0.91428 0.92179 0.90042 0.91198 0.90357 0.90383 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.46 36.01 0.38 -0.26 16 2 C 0.05 0.62 7.39 -13.29 -0.10 0.52 16 3 N -0.48 -7.02 10.50 -7.70 -0.08 -7.10 16 4 C 0.14 2.18 6.79 -83.89 -0.57 1.61 16 5 C -0.09 -1.19 9.70 36.01 0.35 -0.84 16 6 C -0.29 -4.71 6.48 -37.09 -0.24 -4.95 16 7 C 0.59 10.64 7.78 -12.85 -0.10 10.54 16 8 O -0.54 -10.63 14.27 5.20 0.07 -10.55 16 9 N -0.69 -12.08 5.13 -61.62 -0.32 -12.39 16 10 C 0.12 2.08 4.36 -4.05 -0.02 2.06 16 11 C 0.19 3.26 0.41 -131.63 -0.05 3.21 16 12 N -0.71 -14.95 3.60 -47.06 -0.17 -15.12 16 13 C -0.24 -5.80 8.67 -15.06 -0.13 -5.93 16 14 H 0.07 1.73 6.78 -52.48 -0.36 1.38 16 15 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 16 N -0.93 -25.41 13.07 55.49 0.73 -24.68 16 17 Si 0.90 21.38 29.55 -169.99 -5.02 16.35 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C -0.15 -2.28 4.80 -26.59 -0.13 -2.40 16 22 C 0.07 1.03 6.67 37.21 0.25 1.27 16 23 O -0.39 -6.72 10.77 -35.23 -0.38 -7.10 16 24 C 0.07 1.20 6.68 37.20 0.25 1.44 16 25 C -0.15 -2.55 4.79 -26.59 -0.13 -2.68 16 26 S 0.18 2.38 22.31 -107.50 -2.40 -0.02 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 1.49 6.01 -51.93 -0.31 1.18 16 33 H 0.40 6.86 6.61 -40.82 -0.27 6.59 16 34 H 0.07 1.36 7.47 -51.93 -0.39 0.97 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.38 8.66 6.82 -40.82 -0.28 8.38 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 0.96 7.40 -51.93 -0.38 0.58 16 40 H 0.06 1.03 7.15 -51.93 -0.37 0.66 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.07 1.39 7.75 -51.93 -0.40 0.99 16 43 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.08 1.40 7.20 -51.93 -0.37 1.03 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 373.90 15.07 5.63 5.63 Total: -1.00 -29.39 373.90 -8.77 -38.16 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -6.50 Total: 13.43 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -0.34 Total: 3.40 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.16 Total: -59.30 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.31 Total: -17.65 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.40 Total: -0.02 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.39 -8.77 -38.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716909146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.371 kcal (2) G-P(sol) polarization free energy of solvation -29.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds