Wall clock time and date at job start Tue Mar 31 2020 22:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31783 * 122.74925 * 2 1 4 4 C 1.29028 * 117.12563 * 179.97438 * 3 2 1 5 5 S 1.70980 * 110.16507 * 359.72416 * 4 3 2 6 6 C 1.33638 * 122.75034 * 179.97438 * 2 1 3 7 7 C 1.50699 * 126.03955 * 0.02562 * 6 2 1 8 8 C 1.52998 * 109.47108 * 89.99756 * 7 6 2 9 9 C 1.50699 * 109.47108 * 179.97438 * 8 7 6 10 10 O 1.21290 * 119.99974 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00127 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00082 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47063 * 179.97438 * 12 11 9 14 14 O 1.42897 * 110.64315 * 298.31057 * 13 12 11 15 15 C 1.55159 * 110.72013 * 174.97237 * 13 12 11 16 16 C 1.55129 * 101.49043 * 205.96907 * 15 13 12 17 17 N 1.47427 * 104.71812 * 37.29735 * 16 15 13 18 18 C 1.36942 * 125.64885 * 155.81713 * 17 16 15 19 19 H 1.07999 * 119.99355 * 5.51161 * 18 17 16 20 20 C 1.38806 * 119.99977 * 185.51062 * 18 17 16 21 21 N 1.31625 * 120.00252 * 7.32181 * 20 18 17 22 22 Si 1.86805 * 119.99943 * 187.31999 * 20 18 17 23 23 H 1.48491 * 109.47035 * 84.99269 * 22 20 18 24 24 H 1.48501 * 109.47201 * 204.99305 * 22 20 18 25 25 H 1.48504 * 109.46702 * 324.99256 * 22 20 18 26 26 C 1.47024 * 108.70314 * 335.55586 * 17 16 15 27 27 H 1.08997 * 109.47164 * 269.99932 * 1 2 3 28 28 H 1.08998 * 109.46930 * 30.00414 * 1 2 3 29 29 H 1.09000 * 109.46669 * 150.00077 * 1 2 3 30 30 H 1.08000 * 124.91604 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.46940 * 330.00077 * 7 6 2 32 32 H 1.09002 * 109.47061 * 209.99985 * 7 6 2 33 33 H 1.08999 * 109.46958 * 60.00333 * 8 7 6 34 34 H 1.09002 * 109.47346 * 300.00054 * 8 7 6 35 35 H 0.97000 * 119.99790 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47329 * 59.99740 * 12 11 9 37 37 H 1.09002 * 109.46947 * 300.00120 * 12 11 9 38 38 H 0.96697 * 113.99533 * 61.68917 * 14 13 12 39 39 H 1.08998 * 111.00641 * 324.21682 * 15 13 12 40 40 H 1.09007 * 111.00105 * 88.06435 * 15 13 12 41 41 H 1.09001 * 110.49644 * 278.46202 * 16 15 13 42 42 H 1.08994 * 110.34476 * 156.06124 * 16 15 13 43 43 H 0.97000 * 119.99633 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.88611 * 120.70572 * 26 17 16 45 45 H 1.09003 * 109.88062 * 241.86708 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5040 0.9819 0.0005 5 16 3.9333 -0.6731 0.0088 6 6 2.2300 -1.1239 0.0005 7 6 1.6848 -2.5288 0.0006 8 6 1.5008 -3.0046 -1.4419 9 6 0.9561 -4.4097 -1.4418 10 8 0.7363 -4.9748 -0.3913 11 7 0.7123 -5.0380 -2.6090 12 6 0.1824 -6.4038 -2.6089 13 6 -0.0027 -6.8791 -4.0513 14 8 -0.9450 -6.0523 -4.7372 15 6 -0.4435 -8.3664 -4.0870 16 6 0.0769 -8.8096 -5.4796 17 7 1.3616 -8.1045 -5.6411 18 6 2.3938 -8.5016 -6.4487 19 1 2.2711 -9.3520 -7.1030 20 6 3.5977 -7.8111 -6.4261 21 7 3.7991 -6.8683 -5.5300 22 14 4.9323 -8.2199 -7.6677 23 1 4.6872 -7.4669 -8.9238 24 1 6.2569 -7.8407 -7.1136 25 1 4.9137 -9.6773 -7.9525 26 6 1.3484 -6.9012 -4.7965 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 4.2060 1.8027 0.0010 31 1 0.7235 -2.5454 0.5140 32 1 2.3829 -3.1895 0.5148 33 1 2.4621 -2.9880 -1.9553 34 1 0.8027 -2.3440 -1.9561 35 1 0.8878 -4.5859 -3.4490 36 1 -0.7787 -6.4206 -2.0950 37 1 0.8807 -7.0644 -2.0950 38 1 -0.6769 -5.1259 -4.8080 39 1 0.0340 -8.9346 -3.2887 40 1 -1.5286 -8.4537 -4.0314 41 1 -0.6213 -8.5097 -6.2611 42 1 0.2309 -9.8884 -5.5008 43 1 4.6406 -6.3861 -5.5141 44 1 2.1673 -6.9433 -4.0784 45 1 1.4435 -6.0109 -5.4183 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716928716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:04 Heat of formation + Delta-G solvation = -24.833195 kcal Electronic energy + Delta-G solvation = -27040.338869 eV Core-core repulsion = 23185.105107 eV Total energy + Delta-G solvation = -3855.233763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.24511 -39.73346 -38.42528 -35.14819 -34.56020 -34.00317 -32.25376 -31.27902 -29.66957 -28.36840 -27.56481 -25.88072 -25.11968 -23.95918 -22.93001 -20.73265 -19.97067 -19.81634 -19.06989 -18.36469 -17.58039 -16.81376 -16.44367 -15.90065 -15.64797 -15.45023 -15.01346 -14.58559 -14.29756 -14.01272 -13.86520 -13.74074 -13.62819 -13.10121 -12.90058 -12.84371 -12.74110 -12.56943 -12.34147 -12.27081 -12.07223 -11.69596 -11.56192 -11.21848 -11.03694 -10.87238 -10.75506 -10.49158 -10.30721 -10.07097 -9.90083 -9.85704 -9.76894 -9.43114 -9.33055 -8.93201 -8.91075 -8.72204 -6.90319 -5.78696 -3.13642 0.45950 1.13562 1.52828 2.52908 2.72569 3.27556 3.35899 3.41330 3.42429 3.98819 4.42111 4.50444 4.54691 4.73137 4.79445 4.88708 4.94360 5.03914 5.15912 5.31919 5.35783 5.37773 5.42238 5.45476 5.49664 5.59644 5.60656 5.77561 5.82506 5.88259 5.98327 6.07107 6.14592 6.26561 6.40605 6.53593 6.61239 6.86291 7.19432 7.42411 7.47312 7.57453 7.66211 8.02819 8.16697 8.30212 9.12478 9.74036 10.39648 11.31369 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.002678 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.482880 B =10453.783671 C =12105.600944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.058 3.942 3 N -0.468 5.468 4 C 0.013 3.987 5 S 0.125 5.875 6 C -0.214 4.214 7 C -0.025 4.025 8 C -0.138 4.138 9 C 0.516 3.484 10 O -0.547 6.547 11 N -0.720 5.720 12 C 0.110 3.890 13 C 0.086 3.914 14 O -0.551 6.551 15 C -0.114 4.114 16 C 0.135 3.865 17 N -0.603 5.603 18 C -0.226 4.226 19 H 0.079 0.921 20 C -0.009 4.009 21 N -0.923 5.923 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.157 3.843 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.198 0.802 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.402 0.598 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.367 0.633 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.025 0.975 42 H 0.042 0.958 43 H 0.252 0.748 44 H 0.074 0.926 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.526 13.236 11.130 17.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.074 4.074 3 N -0.182 5.182 4 C -0.285 4.285 5 S 0.379 5.621 6 C -0.335 4.335 7 C -0.065 4.065 8 C -0.178 4.178 9 C 0.302 3.698 10 O -0.425 6.425 11 N -0.371 5.371 12 C -0.014 4.014 13 C 0.045 3.955 14 O -0.356 6.356 15 C -0.153 4.153 16 C 0.010 3.990 17 N -0.329 5.329 18 C -0.354 4.354 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.571 5.571 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.032 3.968 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.215 0.785 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.236 0.764 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.214 0.786 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.043 0.957 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.092 0.908 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -4.018 12.339 11.803 17.541 hybrid contribution 0.544 0.793 -1.127 1.482 sum -3.474 13.132 10.676 17.277 Atomic orbital electron populations 1.20382 0.87047 1.03437 1.03029 1.20258 0.98285 0.86147 1.02725 1.66186 1.05075 1.31650 1.15303 1.28269 0.95252 1.00188 1.04744 1.84215 1.07087 1.03350 1.67464 1.25774 0.95037 1.00727 1.11989 1.19757 1.02510 0.88076 0.96170 1.21684 1.03686 0.93934 0.98531 1.20475 0.77603 0.88004 0.83703 1.90696 1.52648 1.67923 1.31235 1.45924 1.66075 1.16449 1.08701 1.21948 0.99151 0.82693 0.97625 1.22918 0.91851 0.91549 0.89223 1.86514 1.47275 1.22624 1.79230 1.22745 1.00555 0.92285 0.99737 1.21623 0.88439 0.95829 0.93155 1.44374 1.12822 1.24313 1.51393 1.19078 0.90173 1.11694 1.14456 0.90334 1.24784 0.97548 0.99068 0.99136 1.69896 1.24824 1.26890 1.35497 0.86117 0.81088 0.77824 0.80634 1.21591 1.21703 1.20701 1.21878 0.91049 0.90247 0.93673 0.90631 0.90601 0.90507 0.78538 0.88791 0.89554 0.88333 0.88578 0.76362 0.91305 0.90446 0.78644 0.90140 0.90979 0.95684 0.93973 0.93789 0.90837 0.95151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 9.82 36.01 0.35 -0.30 16 2 C 0.06 0.60 6.74 -84.22 -0.57 0.03 16 3 N -0.47 -5.21 10.53 -11.89 -0.13 -5.33 16 4 C 0.01 0.12 12.23 51.58 0.63 0.75 16 5 S 0.12 1.12 23.22 -107.50 -2.50 -1.38 16 6 C -0.21 -2.16 5.84 -35.92 -0.21 -2.37 16 7 C -0.02 -0.25 4.44 -27.88 -0.12 -0.38 16 8 C -0.14 -1.40 5.68 -27.88 -0.16 -1.56 16 9 C 0.52 7.06 7.83 -10.98 -0.09 6.97 16 10 O -0.55 -9.28 15.98 5.55 0.09 -9.19 16 11 N -0.72 -9.86 5.17 -60.29 -0.31 -10.18 16 12 C 0.11 1.72 4.73 -4.04 -0.02 1.70 16 13 C 0.09 1.50 0.91 -88.79 -0.08 1.41 16 14 O -0.55 -9.08 13.10 -35.23 -0.46 -9.54 16 15 C -0.11 -1.98 6.27 -24.46 -0.15 -2.13 16 16 C 0.14 2.79 7.24 -2.41 -0.02 2.77 16 17 N -0.60 -14.96 3.39 -169.93 -0.58 -15.54 16 18 C -0.23 -6.16 10.26 -15.06 -0.15 -6.31 16 19 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 20 C -0.01 -0.26 5.45 -17.43 -0.09 -0.35 16 21 N -0.92 -25.77 10.46 55.49 0.58 -25.19 16 22 Si 0.91 21.63 29.56 -169.99 -5.02 16.60 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.16 3.49 4.23 -3.06 -0.01 3.48 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.56 7.19 -51.93 -0.37 0.18 16 30 H 0.20 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.09 0.94 7.39 -51.93 -0.38 0.56 16 32 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.10 0.80 7.98 -51.93 -0.41 0.38 16 35 H 0.40 4.95 7.38 -40.82 -0.30 4.65 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 38 H 0.37 4.79 8.12 45.56 0.37 5.16 16 39 H 0.08 1.33 8.04 -51.93 -0.42 0.91 16 40 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.07 1.84 6.56 -51.93 -0.34 1.50 16 45 H 0.03 0.73 7.89 -51.93 -0.41 0.32 16 LS Contribution 382.38 15.07 5.76 5.76 Total: -1.00 -33.40 382.38 -9.30 -42.70 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.04 Total: 7.56 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -0.70 Total: 3.71 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.43 Total: -56.24 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.37 Total: -18.73 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.50 Total: -1.38 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.40 -9.30 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716928716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.866 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds