Wall clock time and date at job start Tue Mar 31 2020 22:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31783 * 122.74925 * 2 1 4 4 C 1.29028 * 117.12563 * 179.97438 * 3 2 1 5 5 S 1.70980 * 110.16507 * 359.72416 * 4 3 2 6 6 C 1.33638 * 122.75034 * 179.97438 * 2 1 3 7 7 C 1.50699 * 126.03955 * 0.02562 * 6 2 1 8 8 C 1.52998 * 109.47108 * 89.99756 * 7 6 2 9 9 C 1.50699 * 109.47108 * 179.97438 * 8 7 6 10 10 O 1.21290 * 119.99974 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00127 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00082 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47063 * 179.97438 * 12 11 9 14 14 O 1.42897 * 110.64315 * 298.31057 * 13 12 11 15 15 C 1.55159 * 110.72013 * 174.97237 * 13 12 11 16 16 C 1.55129 * 101.49043 * 205.96907 * 15 13 12 17 17 N 1.47427 * 104.71812 * 37.29735 * 16 15 13 18 18 C 1.36942 * 125.64885 * 155.81713 * 17 16 15 19 19 H 1.07999 * 119.99355 * 5.51161 * 18 17 16 20 20 C 1.38806 * 119.99977 * 185.51062 * 18 17 16 21 21 N 1.31625 * 120.00252 * 7.32181 * 20 18 17 22 22 Si 1.86805 * 119.99943 * 187.31999 * 20 18 17 23 23 H 1.48491 * 109.47035 * 84.99269 * 22 20 18 24 24 H 1.48501 * 109.47201 * 204.99305 * 22 20 18 25 25 H 1.48504 * 109.46702 * 324.99256 * 22 20 18 26 26 C 1.47024 * 108.70314 * 335.55586 * 17 16 15 27 27 H 1.08997 * 109.47164 * 269.99932 * 1 2 3 28 28 H 1.08998 * 109.46930 * 30.00414 * 1 2 3 29 29 H 1.09000 * 109.46669 * 150.00077 * 1 2 3 30 30 H 1.08000 * 124.91604 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.46940 * 330.00077 * 7 6 2 32 32 H 1.09002 * 109.47061 * 209.99985 * 7 6 2 33 33 H 1.08999 * 109.46958 * 60.00333 * 8 7 6 34 34 H 1.09002 * 109.47346 * 300.00054 * 8 7 6 35 35 H 0.97000 * 119.99790 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47329 * 59.99740 * 12 11 9 37 37 H 1.09002 * 109.46947 * 300.00120 * 12 11 9 38 38 H 0.96697 * 113.99533 * 61.68917 * 14 13 12 39 39 H 1.08998 * 111.00641 * 324.21682 * 15 13 12 40 40 H 1.09007 * 111.00105 * 88.06435 * 15 13 12 41 41 H 1.09001 * 110.49644 * 278.46202 * 16 15 13 42 42 H 1.08994 * 110.34476 * 156.06124 * 16 15 13 43 43 H 0.97000 * 119.99633 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.88611 * 120.70572 * 26 17 16 45 45 H 1.09003 * 109.88062 * 241.86708 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5040 0.9819 0.0005 5 16 3.9333 -0.6731 0.0088 6 6 2.2300 -1.1239 0.0005 7 6 1.6848 -2.5288 0.0006 8 6 1.5008 -3.0046 -1.4419 9 6 0.9561 -4.4097 -1.4418 10 8 0.7363 -4.9748 -0.3913 11 7 0.7123 -5.0380 -2.6090 12 6 0.1824 -6.4038 -2.6089 13 6 -0.0027 -6.8791 -4.0513 14 8 -0.9450 -6.0523 -4.7372 15 6 -0.4435 -8.3664 -4.0870 16 6 0.0769 -8.8096 -5.4796 17 7 1.3616 -8.1045 -5.6411 18 6 2.3938 -8.5016 -6.4487 19 1 2.2711 -9.3520 -7.1030 20 6 3.5977 -7.8111 -6.4261 21 7 3.7991 -6.8683 -5.5300 22 14 4.9323 -8.2199 -7.6677 23 1 4.6872 -7.4669 -8.9238 24 1 6.2569 -7.8407 -7.1136 25 1 4.9137 -9.6773 -7.9525 26 6 1.3484 -6.9012 -4.7965 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 4.2060 1.8027 0.0010 31 1 0.7235 -2.5454 0.5140 32 1 2.3829 -3.1895 0.5148 33 1 2.4621 -2.9880 -1.9553 34 1 0.8027 -2.3440 -1.9561 35 1 0.8878 -4.5859 -3.4490 36 1 -0.7787 -6.4206 -2.0950 37 1 0.8807 -7.0644 -2.0950 38 1 -0.6769 -5.1259 -4.8080 39 1 0.0340 -8.9346 -3.2887 40 1 -1.5286 -8.4537 -4.0314 41 1 -0.6213 -8.5097 -6.2611 42 1 0.2309 -9.8884 -5.5008 43 1 4.6406 -6.3861 -5.5141 44 1 2.1673 -6.9433 -4.0784 45 1 1.4435 -6.0109 -5.4183 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716928716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:02 Heat of formation + Delta-G solvation = -49.347323 kcal Electronic energy + Delta-G solvation = -27041.401882 eV Core-core repulsion = 23185.105107 eV Total energy + Delta-G solvation = -3856.296775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.18204 -40.76879 -39.82938 -36.74549 -35.44672 -35.20707 -34.10858 -32.08609 -31.21556 -29.74552 -28.68357 -27.44546 -26.02116 -25.29434 -24.01238 -22.27223 -21.35511 -21.18352 -19.79782 -19.14175 -19.02780 -18.42686 -17.71679 -16.96622 -16.85061 -16.47481 -16.25113 -15.80890 -15.75758 -15.59671 -15.09062 -14.85901 -14.55913 -14.42261 -14.27951 -13.96675 -13.58551 -13.56484 -13.45428 -13.31620 -13.21320 -13.07014 -12.98052 -12.68754 -12.48680 -12.43002 -12.14500 -11.92392 -11.80989 -11.80440 -11.67533 -10.97113 -10.84291 -10.74857 -10.60757 -10.20397 -10.11172 -9.65035 -8.88503 -7.84114 -5.21211 -0.25572 0.43634 0.81938 1.46942 1.48011 1.55785 1.62972 1.78878 2.18753 2.49120 3.19341 3.31406 3.34556 3.47380 3.63423 3.88218 3.92061 3.94162 3.97401 3.99900 4.20855 4.31485 4.34504 4.49475 4.55199 4.59011 4.75570 4.76676 4.80666 4.82480 4.94044 4.95196 5.01425 5.02106 5.04524 5.32062 5.33553 5.39220 5.43525 5.51157 5.68066 6.19602 6.47784 6.75696 6.77960 7.09616 7.20324 7.76128 8.40785 9.23207 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.002678 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.482880 B =10453.783671 C =12105.600944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.050 3.950 3 N -0.498 5.498 4 C 0.020 3.980 5 S 0.130 5.870 6 C -0.228 4.228 7 C -0.018 4.018 8 C -0.128 4.128 9 C 0.516 3.484 10 O -0.581 6.581 11 N -0.717 5.717 12 C 0.121 3.879 13 C 0.106 3.894 14 O -0.553 6.553 15 C -0.107 4.107 16 C 0.129 3.871 17 N -0.626 5.626 18 C -0.244 4.244 19 H 0.079 0.921 20 C -0.060 4.060 21 N -0.943 5.943 22 Si 0.974 3.026 23 H -0.287 1.287 24 H -0.294 1.294 25 H -0.273 1.273 26 C 0.168 3.832 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.227 0.773 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.409 0.591 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.383 0.617 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.024 0.976 42 H 0.047 0.953 43 H 0.247 0.753 44 H 0.042 0.958 45 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.129 13.916 11.083 18.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 N -0.212 5.212 4 C -0.277 4.277 5 S 0.384 5.616 6 C -0.349 4.349 7 C -0.058 4.058 8 C -0.168 4.168 9 C 0.304 3.696 10 O -0.461 6.461 11 N -0.369 5.369 12 C -0.004 4.004 13 C 0.064 3.936 14 O -0.360 6.360 15 C -0.146 4.146 16 C 0.004 3.996 17 N -0.353 5.353 18 C -0.373 4.373 19 H 0.096 0.904 20 C -0.254 4.254 21 N -0.591 5.591 22 Si 0.803 3.197 23 H -0.214 1.214 24 H -0.220 1.220 25 H -0.198 1.198 26 C 0.043 3.957 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.244 0.756 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.139 0.861 35 H 0.245 0.755 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.231 0.769 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.042 0.958 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -4.644 13.022 11.739 18.137 hybrid contribution 0.740 0.597 -1.136 1.482 sum -3.904 13.620 10.603 17.696 Atomic orbital electron populations 1.20454 0.85930 1.03956 1.03608 1.20585 0.99258 0.86103 1.02262 1.66251 1.06021 1.32135 1.16802 1.28827 0.95173 1.00908 1.02790 1.84202 1.06525 1.03572 1.67265 1.25731 0.95619 1.00441 1.13115 1.19635 1.02264 0.88015 0.95879 1.21667 1.04178 0.91929 0.99048 1.21029 0.76709 0.88977 0.82903 1.90681 1.54112 1.68965 1.32337 1.45906 1.65910 1.15795 1.09301 1.21713 0.99324 0.83352 0.96001 1.22565 0.89325 0.92283 0.89446 1.86484 1.46567 1.23839 1.79150 1.22741 1.02230 0.91839 0.97768 1.21784 0.86834 0.95887 0.95123 1.44711 1.13667 1.25578 1.51338 1.19407 0.91210 1.11775 1.14931 0.90361 1.25544 0.99564 0.99379 1.00908 1.70092 1.24892 1.27565 1.36574 0.85160 0.78248 0.77917 0.78389 1.21389 1.22022 1.19787 1.21657 0.93031 0.88567 0.92493 0.90009 0.90461 0.89564 0.75627 0.88682 0.90864 0.87985 0.86111 0.75526 0.90044 0.92262 0.76852 0.89402 0.88173 0.95792 0.93497 0.94350 0.94024 0.97591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 9.82 71.24 0.70 -0.52 16 2 C 0.05 0.98 6.74 41.52 0.28 1.26 16 3 N -0.50 -10.43 10.53 -191.54 -2.02 -12.44 16 4 C 0.02 0.33 12.23 130.65 1.60 1.92 16 5 S 0.13 2.20 23.22 -56.49 -1.31 0.89 16 6 C -0.23 -4.37 5.84 24.64 0.14 -4.23 16 7 C -0.02 -0.35 4.44 29.85 0.13 -0.22 16 8 C -0.13 -2.46 5.68 29.85 0.17 -2.29 16 9 C 0.52 13.71 7.83 87.66 0.69 14.39 16 10 O -0.58 -19.47 15.98 -3.06 -0.05 -19.52 16 11 N -0.72 -19.07 5.17 -463.06 -2.40 -21.46 16 12 C 0.12 3.65 4.73 86.38 0.41 4.06 16 13 C 0.11 3.55 0.91 -9.61 -0.01 3.54 16 14 O -0.55 -17.13 13.10 -148.98 -1.95 -19.08 16 15 C -0.11 -3.51 6.27 32.06 0.20 -3.31 16 16 C 0.13 5.19 7.24 86.93 0.63 5.82 16 17 N -0.63 -31.28 3.39 -691.54 -2.35 -33.63 16 18 C -0.24 -13.43 10.26 84.03 0.86 -12.57 16 19 H 0.08 4.17 7.84 -2.91 -0.02 4.14 16 20 C -0.06 -3.32 5.45 84.86 0.46 -2.86 16 21 N -0.94 -53.52 10.46 21.65 0.23 -53.30 16 22 Si 0.97 44.67 29.56 68.60 2.03 46.70 16 23 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 26 C 0.17 7.55 4.23 86.73 0.37 7.91 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.11 7.19 -2.39 -0.02 1.09 16 30 H 0.23 1.98 8.06 -2.91 -0.02 1.95 16 31 H 0.09 1.83 7.39 -2.39 -0.02 1.81 16 32 H 0.07 1.62 8.10 -2.39 -0.02 1.60 16 33 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.12 1.74 7.98 -2.39 -0.02 1.72 16 35 H 0.41 9.73 7.38 -92.71 -0.68 9.05 16 36 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.06 2.03 8.13 -2.39 -0.02 2.01 16 38 H 0.38 9.27 8.12 -74.06 -0.60 8.67 16 39 H 0.09 2.75 8.04 -2.39 -0.02 2.73 16 40 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 41 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 44 H 0.04 2.14 6.56 -2.39 -0.02 2.12 16 45 H 0.01 0.29 7.89 -2.39 -0.02 0.28 16 Total: -1.00 -71.82 382.38 -1.45 -73.27 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: -0.26 Total: 25.65 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 6.63 Total: 12.93 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -6.53 Total: -120.84 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -2.00 Total: -38.60 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -1.31 Total: 0.89 kcal Total: -71.82 -1.45 -73.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716928716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.923 kcal (2) G-P(sol) polarization free energy of solvation -71.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds