Wall clock time and date at job start Tue Mar 31 2020 22:46:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 N 1.34478 * 126.16746 * 2 1
4 4 C 1.30250 * 108.70533 * 179.97438 * 3 2 1
5 5 O 1.33970 * 108.75980 * 0.22772 * 4 3 2
6 6 C 1.34336 * 126.16603 * 179.97438 * 2 1 3
7 7 C 1.50696 * 126.44408 * 0.05348 * 6 2 1
8 8 N 1.46900 * 109.47214 * 90.00184 * 7 6 2
9 9 C 1.46903 * 110.99859 * 175.24771 * 8 7 6
10 10 C 1.53007 * 112.84802 * 290.67512 * 9 8 7
11 11 N 1.46498 * 109.47200 * 312.17263 * 10 9 8
12 12 C 1.34773 * 120.00198 * 174.70235 * 11 10 9
13 13 O 1.21283 * 119.99628 * 0.02562 * 12 11 10
14 14 C 1.50704 * 120.00371 * 180.02562 * 12 11 10
15 15 S 1.80998 * 109.46944 * 180.02562 * 14 12 11
16 16 C 1.76201 * 99.99859 * 179.97438 * 15 14 12
17 17 H 1.08005 * 119.99981 * 0.02562 * 16 15 14
18 18 C 1.38803 * 120.00213 * 179.97438 * 16 15 14
19 19 N 1.31622 * 119.99560 * 0.02562 * 18 16 15
20 20 Si 1.86795 * 119.99880 * 180.02562 * 18 16 15
21 21 H 1.48499 * 109.47428 * 90.00201 * 20 18 16
22 22 H 1.48503 * 109.46921 * 210.00305 * 20 18 16
23 23 H 1.48506 * 109.47367 * 329.99693 * 20 18 16
24 24 C 1.53781 * 113.61188 * 159.37361 * 9 8 7
25 25 C 1.53786 * 87.07659 * 220.01553 * 24 9 8
26 26 C 1.53776 * 113.61454 * 61.87293 * 9 8 7
27 27 H 1.08997 * 109.46934 * 90.03259 * 1 2 3
28 28 H 1.09007 * 109.46926 * 210.02576 * 1 2 3
29 29 H 1.08994 * 109.47624 * 330.02365 * 1 2 3
30 30 H 1.08000 * 125.62411 * 179.97438 * 4 3 2
31 31 H 1.09003 * 109.47263 * 210.00706 * 7 6 2
32 32 H 1.09005 * 109.46902 * 329.99833 * 7 6 2
33 33 H 1.00897 * 110.99715 * 299.20073 * 8 7 6
34 34 H 1.08996 * 109.46958 * 72.17591 * 10 9 8
35 35 H 1.09000 * 109.46941 * 192.17587 * 10 9 8
36 36 H 0.97000 * 120.00275 * 354.70745 * 11 10 9
37 37 H 1.09002 * 109.46299 * 300.00125 * 14 12 11
38 38 H 1.09000 * 109.46964 * 59.99951 * 14 12 11
39 39 H 0.97007 * 119.99501 * 180.02562 * 19 18 16
40 40 H 1.08997 * 113.61354 * 334.56114 * 24 9 8
41 41 H 1.08994 * 113.61476 * 105.46915 * 24 9 8
42 42 H 1.09003 * 113.61371 * 270.87780 * 25 24 9
43 43 H 1.09004 * 113.68530 * 139.99213 * 25 24 9
44 44 H 1.09003 * 113.61339 * 254.52436 * 26 9 8
45 45 H 1.08997 * 113.61938 * 25.43233 * 26 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3006 1.0856 0.0000
4 6 3.5431 0.6948 0.0006
5 8 3.5734 -0.6446 -0.0041
6 6 2.2997 -1.0845 0.0005
7 6 1.8493 -2.5226 0.0000
8 7 1.7041 -2.9898 -1.3851
9 6 1.3750 -4.4209 -1.4262
10 6 2.5372 -5.3108 -0.9808
11 7 3.7634 -4.8906 -1.6635
12 6 4.9413 -5.4638 -1.3467
13 8 4.9860 -6.3279 -0.4968
14 6 6.2028 -5.0313 -2.0486
15 16 7.6051 -5.9796 -1.4079
16 6 8.9074 -5.2907 -2.3744
17 1 8.6926 -4.5172 -3.0970
18 6 10.2095 -5.7413 -2.2065
19 7 10.4712 -6.6836 -1.3256
20 14 11.5901 -5.0105 -3.2307
21 1 12.1673 -3.8408 -2.5208
22 1 12.6462 -6.0333 -3.4396
23 1 11.0544 -4.5764 -4.5460
24 6 0.7270 -4.8662 -2.7479
25 6 -0.2045 -5.7504 -1.9020
26 6 0.0394 -4.7656 -0.7463
27 1 -0.3633 -0.0006 -1.0276
28 1 -0.3633 -0.8898 0.5143
29 1 -0.3634 0.8901 0.5134
30 1 4.4066 1.3434 0.0003
31 1 2.5896 -3.1354 0.5144
32 1 0.8910 -2.6033 0.5132
33 1 1.0132 -2.4455 -1.8797
34 1 2.6720 -5.2200 0.0969
35 1 2.3180 -6.3482 -1.2335
36 1 3.7276 -4.1998 -2.3435
37 1 6.1024 -5.2100 -3.1191
38 1 6.3710 -3.9689 -1.8717
39 1 11.3812 -6.9983 -1.2080
40 1 0.2093 -4.0633 -3.2726
41 1 1.3980 -5.4320 -3.3942
42 1 0.1913 -6.7488 -1.7159
43 1 -1.2358 -5.7628 -2.2547
44 1 0.1553 -5.2503 0.2231
45 1 -0.6663 -3.9353 -0.7239
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001717147544.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:46:54
Heat of formation + Delta-G solvation = 6.407600 kcal
Electronic energy + Delta-G solvation = -26932.212645 eV
Core-core repulsion = 23078.333585 eV
Total energy + Delta-G solvation = -3853.879060 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-43.53570 -40.51650 -38.65421 -35.52424 -34.96585 -33.96788 -32.39567 -31.59604
-29.76766 -28.44088 -26.72878 -26.35902 -25.46223 -25.20182 -22.88812 -22.31118
-20.94658 -20.20547 -19.22515 -17.74452 -17.46634 -17.03340 -16.63673 -16.27091
-16.08357 -15.32933 -15.11935 -14.89322 -14.77426 -14.75912 -14.48448 -13.87263
-13.66759 -13.58132 -13.41098 -13.09431 -12.98585 -12.71877 -12.64466 -12.50270
-12.33385 -11.96541 -11.67498 -11.46051 -11.22946 -11.03738 -11.02181 -10.98769
-10.73955 -10.72063 -10.66484 -9.77840 -9.34638 -9.03758 -9.01797 -8.82362
-8.75163 -8.18798 -6.45462 -6.18447 -3.88172 1.20014 2.40474 2.55587
3.07502 3.18973 3.24599 3.29901 3.34098 3.62519 3.87284 3.92992
4.08332 4.20992 4.23957 4.30379 4.42501 4.50651 4.52762 4.71663
5.02067 5.04502 5.16694 5.20017 5.21378 5.24598 5.27390 5.29660
5.34947 5.45391 5.53980 5.59281 5.64302 5.68763 5.70371 5.81753
5.83837 5.91096 5.97510 6.08407 6.22381 6.44470 6.74395 6.88740
7.49193 7.63108 7.87875 8.38830 8.71848 9.26982 10.89030
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.010770 B = 0.002875 C = 0.002384
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2599.288384 B = 9737.658478 C =11740.763167
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 C -0.015 4.015
3 N -0.490 5.490
4 C 0.176 3.824
5 O -0.189 6.189
6 C -0.034 4.034
7 C 0.143 3.857
8 N -0.668 5.668
9 C 0.085 3.915
10 C 0.153 3.847
11 N -0.724 5.724
12 C 0.531 3.469
13 O -0.524 6.524
14 C -0.151 4.151
15 S -0.061 6.061
16 C -0.534 4.534
17 H 0.072 0.928
18 C 0.073 3.927
19 N -0.868 5.868
20 Si 0.918 3.082
21 H -0.277 1.277
22 H -0.282 1.282
23 H -0.272 1.272
24 C -0.130 4.130
25 C -0.139 4.139
26 C -0.167 4.167
27 H 0.073 0.927
28 H 0.071 0.929
29 H 0.075 0.925
30 H 0.249 0.751
31 H 0.096 0.904
32 H 0.068 0.932
33 H 0.347 0.653
34 H 0.067 0.933
35 H 0.072 0.928
36 H 0.405 0.595
37 H 0.088 0.912
38 H 0.089 0.911
39 H 0.268 0.732
40 H 0.085 0.915
41 H 0.079 0.921
42 H 0.086 0.914
43 H 0.071 0.929
44 H 0.074 0.926
45 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.418 10.884 -0.032 27.650
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.135 4.135
3 N -0.220 5.220
4 C -0.051 4.051
5 O -0.074 6.074
6 C -0.088 4.088
7 C 0.015 3.985
8 N -0.300 5.300
9 C -0.007 4.007
10 C 0.028 3.972
11 N -0.379 5.379
12 C 0.317 3.683
13 O -0.400 6.400
14 C -0.302 4.302
15 S 0.165 5.835
16 C -0.682 4.682
17 H 0.090 0.910
18 C -0.136 4.136
19 N -0.504 5.504
20 Si 0.744 3.256
21 H -0.203 1.203
22 H -0.208 1.208
23 H -0.197 1.197
24 C -0.168 4.168
25 C -0.176 4.176
26 C -0.207 4.207
27 H 0.092 0.908
28 H 0.090 0.910
29 H 0.094 0.906
30 H 0.265 0.735
31 H 0.114 0.886
32 H 0.086 0.914
33 H 0.167 0.833
34 H 0.085 0.915
35 H 0.090 0.910
36 H 0.241 0.759
37 H 0.106 0.894
38 H 0.107 0.893
39 H 0.078 0.922
40 H 0.104 0.896
41 H 0.097 0.903
42 H 0.105 0.895
43 H 0.090 0.910
44 H 0.093 0.907
45 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -24.667 9.820 1.380 26.586
hybrid contribution 0.310 1.417 -1.655 2.201
sum -24.358 11.237 -0.275 26.826
Atomic orbital electron populations
1.20108 0.86782 1.03207 1.02735 1.21500 0.97799 0.87788 1.06451
1.70352 1.01453 1.31650 1.18520 1.28057 0.97459 0.79505 1.00046
1.84518 1.29873 1.24347 1.68623 1.22967 0.81058 0.97215 1.07609
1.20171 1.00549 0.86779 0.91016 1.60137 1.53711 1.02642 1.13498
1.22614 0.92824 0.87493 0.97755 1.20930 0.82477 0.96570 0.97271
1.45759 1.06102 1.42815 1.43201 1.20292 0.84178 0.81248 0.82576
1.90692 1.86180 1.30875 1.32205 1.23502 0.97927 1.05404 1.03321
1.85356 0.95137 1.50078 1.52908 1.22875 0.93924 1.25839 1.25567
0.90971 1.24987 0.98112 0.94900 0.95614 1.70022 1.20769 1.26802
1.32780 0.86177 0.80616 0.78730 0.80031 1.20291 1.20785 1.19694
1.23124 0.98297 0.99679 0.95679 1.22761 1.00085 0.98375 0.96420
1.23623 0.97454 1.00294 0.99342 0.90787 0.91035 0.90583 0.73492
0.88606 0.91406 0.83316 0.91510 0.91028 0.75944 0.89385 0.89299
0.92241 0.89642 0.90268 0.89518 0.91033 0.90697 0.89769
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.47 10.22 36.00 0.37 -0.10 16
2 C -0.01 -0.15 7.11 -82.81 -0.59 -0.74 16
3 N -0.49 -5.59 11.29 -11.18 -0.13 -5.72 16
4 C 0.18 1.75 13.23 52.09 0.69 2.43 16
5 O -0.19 -2.26 10.78 5.35 0.06 -2.20 16
6 C -0.03 -0.36 6.94 -35.69 -0.25 -0.60 16
7 C 0.14 1.20 5.63 -4.98 -0.03 1.17 16
8 N -0.67 -5.10 5.76 -100.39 -0.58 -5.68 16
9 C 0.08 0.63 0.80 -130.79 -0.10 0.53 16
10 C 0.15 1.71 4.63 -4.04 -0.02 1.69 16
11 N -0.72 -9.92 5.38 -60.29 -0.32 -10.24 16
12 C 0.53 10.11 7.85 -10.99 -0.09 10.02 16
13 O -0.52 -12.00 15.86 5.55 0.09 -11.92 16
14 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16
15 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16
16 C -0.53 -15.42 9.50 30.94 0.29 -15.13 16
17 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16
18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16
19 N -0.87 -26.44 13.22 55.49 0.73 -25.70 16
20 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16
21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16
22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16
23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16
24 C -0.13 -0.85 7.33 -25.92 -0.19 -1.04 16
25 C -0.14 -0.82 7.73 -25.92 -0.20 -1.02 16
26 C -0.17 -0.97 6.44 -25.92 -0.17 -1.13 16
27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
28 H 0.07 0.34 7.17 -51.93 -0.37 -0.03 16
29 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16
30 H 0.25 1.35 8.06 -52.49 -0.42 0.93 16
31 H 0.10 0.99 6.97 -51.93 -0.36 0.63 16
32 H 0.07 0.42 6.57 -51.93 -0.34 0.08 16
33 H 0.35 2.19 8.51 -39.29 -0.33 1.86 16
34 H 0.07 0.83 7.39 -51.93 -0.38 0.44 16
35 H 0.07 0.83 7.36 -51.93 -0.38 0.45 16
36 H 0.41 4.93 8.10 -40.82 -0.33 4.60 16
37 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16
38 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16
39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16
40 H 0.09 0.46 7.95 -51.93 -0.41 0.05 16
41 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16
42 H 0.09 0.57 7.67 -51.93 -0.40 0.17 16
43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16
44 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16
45 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16
LS Contribution 389.69 15.07 5.87 5.87
Total: -1.00 -36.55 389.69 -8.33 -44.88
By element:
Atomic # 1 Polarization: 9.48 SS G_CDS: -6.66 Total: 2.82 kcal
Atomic # 6 Polarization: -4.67 SS G_CDS: -0.15 Total: -4.82 kcal
Atomic # 7 Polarization: -47.05 SS G_CDS: -0.29 Total: -47.34 kcal
Atomic # 8 Polarization: -14.27 SS G_CDS: 0.15 Total: -14.12 kcal
Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal
Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -36.55 -8.33 -44.88 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001717147544.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.288 kcal
(2) G-P(sol) polarization free energy of solvation -36.553 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.735 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.880 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.408 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds