Wall clock time and date at job start Tue Mar 31 2020 22:46:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 N 1.34478 * 126.16746 * 2 1
4 4 C 1.30250 * 108.70533 * 179.97438 * 3 2 1
5 5 O 1.33970 * 108.75980 * 0.22772 * 4 3 2
6 6 C 1.34336 * 126.16603 * 179.97438 * 2 1 3
7 7 C 1.50696 * 126.44408 * 0.05348 * 6 2 1
8 8 N 1.46900 * 109.47214 * 90.00184 * 7 6 2
9 9 C 1.46903 * 110.99859 * 175.24771 * 8 7 6
10 10 C 1.53007 * 112.84802 * 290.67512 * 9 8 7
11 11 N 1.46498 * 109.47200 * 312.17263 * 10 9 8
12 12 C 1.34773 * 120.00198 * 174.70235 * 11 10 9
13 13 O 1.21283 * 119.99628 * 0.02562 * 12 11 10
14 14 C 1.50704 * 120.00371 * 180.02562 * 12 11 10
15 15 S 1.80998 * 109.46944 * 180.02562 * 14 12 11
16 16 C 1.76201 * 99.99859 * 179.97438 * 15 14 12
17 17 H 1.08005 * 119.99981 * 0.02562 * 16 15 14
18 18 C 1.38803 * 120.00213 * 179.97438 * 16 15 14
19 19 N 1.31622 * 119.99560 * 0.02562 * 18 16 15
20 20 Si 1.86795 * 119.99880 * 180.02562 * 18 16 15
21 21 H 1.48499 * 109.47428 * 90.00201 * 20 18 16
22 22 H 1.48503 * 109.46921 * 210.00305 * 20 18 16
23 23 H 1.48506 * 109.47367 * 329.99693 * 20 18 16
24 24 C 1.53781 * 113.61188 * 159.37361 * 9 8 7
25 25 C 1.53786 * 87.07659 * 220.01553 * 24 9 8
26 26 C 1.53776 * 113.61454 * 61.87293 * 9 8 7
27 27 H 1.08997 * 109.46934 * 90.03259 * 1 2 3
28 28 H 1.09007 * 109.46926 * 210.02576 * 1 2 3
29 29 H 1.08994 * 109.47624 * 330.02365 * 1 2 3
30 30 H 1.08000 * 125.62411 * 179.97438 * 4 3 2
31 31 H 1.09003 * 109.47263 * 210.00706 * 7 6 2
32 32 H 1.09005 * 109.46902 * 329.99833 * 7 6 2
33 33 H 1.00897 * 110.99715 * 299.20073 * 8 7 6
34 34 H 1.08996 * 109.46958 * 72.17591 * 10 9 8
35 35 H 1.09000 * 109.46941 * 192.17587 * 10 9 8
36 36 H 0.97000 * 120.00275 * 354.70745 * 11 10 9
37 37 H 1.09002 * 109.46299 * 300.00125 * 14 12 11
38 38 H 1.09000 * 109.46964 * 59.99951 * 14 12 11
39 39 H 0.97007 * 119.99501 * 180.02562 * 19 18 16
40 40 H 1.08997 * 113.61354 * 334.56114 * 24 9 8
41 41 H 1.08994 * 113.61476 * 105.46915 * 24 9 8
42 42 H 1.09003 * 113.61371 * 270.87780 * 25 24 9
43 43 H 1.09004 * 113.68530 * 139.99213 * 25 24 9
44 44 H 1.09003 * 113.61339 * 254.52436 * 26 9 8
45 45 H 1.08997 * 113.61938 * 25.43233 * 26 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3006 1.0856 0.0000
4 6 3.5431 0.6948 0.0006
5 8 3.5734 -0.6446 -0.0041
6 6 2.2997 -1.0845 0.0005
7 6 1.8493 -2.5226 0.0000
8 7 1.7041 -2.9898 -1.3851
9 6 1.3750 -4.4209 -1.4262
10 6 2.5372 -5.3108 -0.9808
11 7 3.7634 -4.8906 -1.6635
12 6 4.9413 -5.4638 -1.3467
13 8 4.9860 -6.3279 -0.4968
14 6 6.2028 -5.0313 -2.0486
15 16 7.6051 -5.9796 -1.4079
16 6 8.9074 -5.2907 -2.3744
17 1 8.6926 -4.5172 -3.0970
18 6 10.2095 -5.7413 -2.2065
19 7 10.4712 -6.6836 -1.3256
20 14 11.5901 -5.0105 -3.2307
21 1 12.1673 -3.8408 -2.5208
22 1 12.6462 -6.0333 -3.4396
23 1 11.0544 -4.5764 -4.5460
24 6 0.7270 -4.8662 -2.7479
25 6 -0.2045 -5.7504 -1.9020
26 6 0.0394 -4.7656 -0.7463
27 1 -0.3633 -0.0006 -1.0276
28 1 -0.3633 -0.8898 0.5143
29 1 -0.3634 0.8901 0.5134
30 1 4.4066 1.3434 0.0003
31 1 2.5896 -3.1354 0.5144
32 1 0.8910 -2.6033 0.5132
33 1 1.0132 -2.4455 -1.8797
34 1 2.6720 -5.2200 0.0969
35 1 2.3180 -6.3482 -1.2335
36 1 3.7276 -4.1998 -2.3435
37 1 6.1024 -5.2100 -3.1191
38 1 6.3710 -3.9689 -1.8717
39 1 11.3812 -6.9983 -1.2080
40 1 0.2093 -4.0633 -3.2726
41 1 1.3980 -5.4320 -3.3942
42 1 0.1913 -6.7488 -1.7159
43 1 -1.2358 -5.7628 -2.2547
44 1 0.1553 -5.2503 0.2231
45 1 -0.6663 -3.9353 -0.7239
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001717147544.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:46:53
Heat of formation + Delta-G solvation = -22.815352 kcal
Electronic energy + Delta-G solvation = -26933.479847 eV
Core-core repulsion = 23078.333585 eV
Total energy + Delta-G solvation = -3855.146263 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-44.29080 -41.29924 -40.01259 -36.23992 -35.63559 -35.26930 -34.58559 -32.26318
-31.28068 -29.08367 -27.95120 -27.44841 -26.89269 -25.91923 -23.53329 -23.02591
-21.73336 -21.59821 -20.16572 -19.52027 -18.19846 -17.83601 -17.73379 -17.39567
-17.02320 -16.88060 -16.44332 -16.22095 -15.82771 -15.64668 -15.37541 -15.15500
-14.63764 -14.55490 -14.28919 -14.24223 -14.13766 -13.63460 -13.51333 -13.27646
-13.16537 -13.14174 -12.92981 -12.89014 -12.61071 -12.49157 -12.07893 -11.95863
-11.74466 -11.54687 -11.47542 -11.24001 -11.14456 -10.94385 -10.28287 -10.04790
-9.69375 -9.43116 -8.66541 -8.34791 -6.12681 0.46649 1.27083 1.42209
1.46787 1.57696 1.64152 1.67519 1.88553 2.26268 2.31707 2.99189
3.10299 3.32174 3.34205 3.48175 3.59571 3.63742 3.85837 3.90262
3.93759 4.05454 4.10969 4.28574 4.36624 4.48708 4.50482 4.59014
4.65723 4.69201 4.78053 4.80757 4.84178 4.88460 5.05394 5.09859
5.11968 5.14875 5.18826 5.38353 5.41539 5.44420 5.50076 5.86892
6.19751 6.36862 6.57398 6.75319 7.06370 7.28306 8.74540
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.010770 B = 0.002875 C = 0.002384
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2599.288384 B = 9737.658478 C =11740.763167
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 C -0.020 4.020
3 N -0.519 5.519
4 C 0.174 3.826
5 O -0.215 6.215
6 C -0.052 4.052
7 C 0.151 3.849
8 N -0.673 5.673
9 C 0.088 3.912
10 C 0.149 3.851
11 N -0.697 5.697
12 C 0.532 3.468
13 O -0.569 6.569
14 C -0.127 4.127
15 S -0.148 6.148
16 C -0.547 4.547
17 H 0.081 0.919
18 C 0.013 3.987
19 N -0.911 5.911
20 Si 0.999 3.001
21 H -0.268 1.268
22 H -0.277 1.277
23 H -0.258 1.258
24 C -0.125 4.125
25 C -0.137 4.137
26 C -0.156 4.156
27 H 0.088 0.912
28 H 0.092 0.908
29 H 0.072 0.928
30 H 0.281 0.719
31 H 0.070 0.930
32 H 0.094 0.906
33 H 0.360 0.640
34 H 0.054 0.946
35 H 0.069 0.931
36 H 0.416 0.584
37 H 0.106 0.894
38 H 0.102 0.898
39 H 0.271 0.729
40 H 0.104 0.896
41 H 0.065 0.935
42 H 0.075 0.925
43 H 0.086 0.914
44 H 0.070 0.930
45 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.243 12.652 -1.634 30.081
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.140 4.140
3 N -0.249 5.249
4 C -0.052 4.052
5 O -0.101 6.101
6 C -0.105 4.105
7 C 0.022 3.978
8 N -0.307 5.307
9 C -0.004 4.004
10 C 0.025 3.975
11 N -0.350 5.350
12 C 0.318 3.682
13 O -0.448 6.448
14 C -0.279 4.279
15 S 0.079 5.921
16 C -0.695 4.695
17 H 0.099 0.901
18 C -0.191 4.191
19 N -0.548 5.548
20 Si 0.820 3.180
21 H -0.193 1.193
22 H -0.202 1.202
23 H -0.182 1.182
24 C -0.163 4.163
25 C -0.175 4.175
26 C -0.196 4.196
27 H 0.106 0.894
28 H 0.110 0.890
29 H 0.091 0.909
30 H 0.296 0.704
31 H 0.089 0.911
32 H 0.111 0.889
33 H 0.181 0.819
34 H 0.072 0.928
35 H 0.087 0.913
36 H 0.253 0.747
37 H 0.124 0.876
38 H 0.120 0.880
39 H 0.080 0.920
40 H 0.123 0.877
41 H 0.084 0.916
42 H 0.094 0.906
43 H 0.105 0.895
44 H 0.089 0.911
45 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges -26.558 11.620 -0.248 28.990
hybrid contribution 0.763 0.918 -1.143 1.652
sum -25.795 12.538 -1.390 28.714
Atomic orbital electron populations
1.20247 0.84475 1.04102 1.03905 1.22031 0.99274 0.87220 1.05455
1.70381 1.02287 1.32549 1.19698 1.28882 0.98281 0.79239 0.98754
1.84510 1.31037 1.25358 1.69212 1.23330 0.80659 0.98104 1.08417
1.20139 1.00893 0.85331 0.91428 1.60025 1.54608 1.02688 1.13333
1.22449 0.91937 0.86773 0.99207 1.21104 0.82440 0.97561 0.96412
1.45522 1.05409 1.41599 1.42507 1.20013 0.85040 0.81117 0.82070
1.90679 1.86822 1.33096 1.34246 1.23337 0.95849 1.04653 1.04034
1.85510 0.99044 1.52775 1.54727 1.23198 0.94450 1.26092 1.25714
0.90122 1.26129 1.01076 0.95121 0.96804 1.70183 1.21598 1.28374
1.34603 0.84952 0.76612 0.77953 0.78452 1.19277 1.20174 1.18233
1.23143 0.98071 1.00128 0.94915 1.22750 1.00753 0.97766 0.96260
1.23613 0.96195 1.00864 0.98949 0.89358 0.88966 0.90871 0.70370
0.91123 0.88871 0.81872 0.92782 0.91331 0.74656 0.87551 0.87973
0.91971 0.87717 0.91586 0.90615 0.89502 0.91117 0.87455
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.75 10.22 71.23 0.73 -0.02 16
2 C -0.02 -0.37 7.11 41.26 0.29 -0.07 16
3 N -0.52 -11.37 11.29 -304.07 -3.43 -14.80 16
4 C 0.17 3.34 13.23 130.48 1.73 5.06 16
5 O -0.22 -5.09 10.78 -3.77 -0.04 -5.13 16
6 C -0.05 -1.02 6.94 24.79 0.17 -0.85 16
7 C 0.15 2.30 5.63 85.56 0.48 2.78 16
8 N -0.67 -8.78 5.76 -471.53 -2.72 -11.49 16
9 C 0.09 1.13 0.80 4.05 0.00 1.13 16
10 C 0.15 3.27 4.63 86.38 0.40 3.67 16
11 N -0.70 -18.72 5.38 -463.05 -2.49 -21.21 16
12 C 0.53 20.47 7.85 87.66 0.69 21.16 16
13 O -0.57 -26.98 15.86 -3.04 -0.05 -27.02 16
14 C -0.13 -5.32 6.16 71.24 0.44 -4.88 16
15 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16
16 C -0.55 -31.88 9.50 67.96 0.65 -31.23 16
17 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16
18 C 0.01 0.77 5.49 84.86 0.47 1.24 16
19 N -0.91 -56.64 13.22 21.65 0.29 -56.36 16
20 Si 1.00 44.19 29.55 68.60 2.03 46.22 16
21 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16
22 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16
23 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16
24 C -0.12 -1.29 7.33 31.12 0.23 -1.06 16
25 C -0.14 -1.27 7.73 31.12 0.24 -1.03 16
26 C -0.16 -1.36 6.44 31.12 0.20 -1.16 16
27 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16
28 H 0.09 0.57 7.17 -2.38 -0.02 0.55 16
29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16
30 H 0.28 2.72 8.06 -2.91 -0.02 2.70 16
31 H 0.07 1.45 6.97 -2.39 -0.02 1.43 16
32 H 0.09 0.91 6.57 -2.38 -0.02 0.90 16
33 H 0.36 3.36 8.51 -89.70 -0.76 2.60 16
34 H 0.05 1.36 7.39 -2.39 -0.02 1.34 16
35 H 0.07 1.58 7.36 -2.39 -0.02 1.56 16
36 H 0.42 9.52 8.10 -92.71 -0.75 8.77 16
37 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16
38 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16
39 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16
40 H 0.10 0.73 7.95 -2.39 -0.02 0.71 16
41 H 0.07 0.89 8.10 -2.39 -0.02 0.87 16
42 H 0.08 0.88 7.67 -2.39 -0.02 0.86 16
43 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16
44 H 0.07 0.72 8.10 -2.39 -0.02 0.70 16
45 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16
Total: -1.00 -82.43 389.69 -1.35 -83.78
By element:
Atomic # 1 Polarization: 21.33 SS G_CDS: -0.49 Total: 20.85 kcal
Atomic # 6 Polarization: -11.98 SS G_CDS: 6.71 Total: -5.26 kcal
Atomic # 7 Polarization: -95.50 SS G_CDS: -8.35 Total: -103.86 kcal
Atomic # 8 Polarization: -32.07 SS G_CDS: -0.09 Total: -32.16 kcal
Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal
Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal
Total: -82.43 -1.35 -83.78 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001717147544.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.963 kcal
(2) G-P(sol) polarization free energy of solvation -82.427 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.464 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.351 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.778 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.815 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds