Wall clock time and date at job start Tue Mar 31 2020 22:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34036 * 126.78164 * 2 1 4 4 N 1.20921 * 111.57107 * 179.97438 * 3 2 1 5 5 C 1.30174 * 111.60286 * 0.02562 * 4 3 2 6 6 C 1.35455 * 126.77243 * 180.02562 * 2 1 3 7 7 C 1.50701 * 128.00744 * 359.73241 * 6 2 1 8 8 N 1.46896 * 109.47024 * 80.00196 * 7 6 2 9 9 C 1.47480 * 111.00133 * 265.96888 * 8 7 6 10 10 C 1.53510 * 87.93150 * 221.29455 * 9 8 7 11 11 C 1.53005 * 114.33887 * 139.68346 * 10 9 8 12 12 H 1.09004 * 109.47161 * 211.07569 * 11 10 9 13 13 C 1.52998 * 109.47115 * 331.07628 * 11 10 9 14 14 N 1.46504 * 109.47156 * 91.08009 * 11 10 9 15 15 C 1.34769 * 119.99967 * 155.00150 * 14 11 10 16 16 O 1.21281 * 120.00346 * 359.97438 * 15 14 11 17 17 C 1.50700 * 119.99735 * 179.97438 * 15 14 11 18 18 S 1.81004 * 109.47103 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00095 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99784 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00258 * 180.02562 * 19 18 17 22 22 N 1.31635 * 119.99464 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00272 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47105 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47007 * 119.99869 * 23 21 19 26 26 H 1.48504 * 109.47151 * 239.99809 * 23 21 19 27 27 C 1.47481 * 111.00034 * 169.99800 * 8 7 6 28 28 H 1.08996 * 109.47090 * 270.00061 * 1 2 3 29 29 H 1.09005 * 109.46998 * 29.99414 * 1 2 3 30 30 H 1.08995 * 109.47298 * 149.99613 * 1 2 3 31 31 H 1.08000 * 126.80463 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.47079 * 200.00509 * 7 6 2 33 33 H 1.08998 * 109.47054 * 319.99986 * 7 6 2 34 34 H 1.08995 * 113.47339 * 336.06666 * 9 8 7 35 35 H 1.08999 * 113.47198 * 106.52959 * 9 8 7 36 36 H 1.08998 * 114.17789 * 272.37718 * 10 9 8 37 37 H 1.09000 * 109.47102 * 180.02562 * 13 11 10 38 38 H 1.09003 * 109.47517 * 299.99828 * 13 11 10 39 39 H 1.09001 * 109.47314 * 60.00434 * 13 11 10 40 40 H 0.96998 * 119.99477 * 334.99444 * 14 11 10 41 41 H 1.08999 * 109.47505 * 300.00010 * 17 15 14 42 42 H 1.09007 * 109.47151 * 60.00227 * 17 15 14 43 43 H 0.97008 * 119.99623 * 179.97438 * 22 21 19 44 44 H 1.08999 * 113.47970 * 253.47567 * 27 8 7 45 45 H 1.09000 * 113.47566 * 23.87701 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0735 0.0000 4 7 3.4764 0.7563 0.0005 5 6 3.6213 -0.5374 0.0004 6 6 2.3179 -1.0850 -0.0005 7 6 1.9222 -2.5392 0.0044 8 7 1.5566 -2.9517 -1.3572 9 6 0.1024 -2.8339 -1.5726 10 6 0.1612 -4.1721 -2.3224 11 6 -1.0120 -5.1102 -2.0314 12 1 -0.6774 -6.1448 -2.1071 13 6 -1.5379 -4.8461 -0.6191 14 7 -2.0815 -4.8706 -3.0036 15 6 -2.9642 -5.8482 -3.2889 16 8 -2.8729 -6.9265 -2.7413 17 6 -4.0647 -5.6015 -4.2885 18 16 -5.0760 -7.0936 -4.4530 19 6 -6.2477 -6.5391 -5.6464 20 1 -6.1860 -5.5342 -6.0372 21 6 -7.2505 -7.3934 -6.0835 22 7 -7.3258 -8.6181 -5.6067 23 14 -8.4931 -6.8053 -7.3481 24 1 -8.1924 -5.3997 -7.7210 25 1 -8.4153 -7.6658 -8.5558 26 1 -9.8598 -6.8827 -6.7724 27 6 1.3939 -4.4151 -1.4403 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 4.5527 -1.0841 0.0003 32 1 2.7600 -3.1424 0.3543 33 1 1.0697 -2.6815 0.6685 34 1 -0.4780 -2.8776 -0.6510 35 1 -0.1758 -1.9925 -2.2072 36 1 0.3843 -4.0789 -3.3852 37 1 -2.3735 -5.5147 -0.4117 38 1 -0.7422 -5.0245 0.1042 39 1 -1.8726 -3.8115 -0.5435 40 1 -2.1543 -4.0083 -3.4418 41 1 -4.6881 -4.7755 -3.9462 42 1 -3.6279 -5.3507 -5.2553 43 1 -8.0269 -9.2150 -5.9119 44 1 2.2102 -4.9139 -1.9627 45 1 1.1592 -4.8810 -0.4832 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717542276.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:10 Heat of formation + Delta-G solvation = 64.516909 kcal Electronic energy + Delta-G solvation = -26290.878162 eV Core-core repulsion = 22439.518911 eV Total energy + Delta-G solvation = -3851.359252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.27134 -41.12260 -39.06789 -35.80491 -34.60461 -33.50910 -32.44637 -31.73285 -30.00288 -28.51974 -28.02877 -26.42626 -25.64282 -25.45521 -23.23436 -22.53344 -20.88632 -20.30530 -19.45478 -18.01160 -17.89093 -17.49136 -16.77504 -16.47119 -16.24588 -15.51244 -15.15162 -15.03499 -14.82141 -14.80148 -14.35422 -13.99816 -13.71800 -13.67178 -13.33526 -13.20937 -13.02820 -12.90106 -12.65680 -12.59214 -12.16419 -11.98507 -11.82996 -11.61467 -11.27532 -11.09745 -11.08594 -11.03749 -10.77461 -10.74034 -10.56577 -9.82547 -9.62439 -9.40469 -9.30972 -9.09645 -8.94272 -8.25277 -6.51932 -6.23753 -3.94188 1.08322 1.86760 2.71413 2.98303 3.06346 3.20155 3.26422 3.30721 3.57412 3.63101 3.93989 4.00909 4.18161 4.18619 4.23802 4.35999 4.58863 4.72406 4.77686 4.86207 4.91210 4.93701 5.02947 5.07445 5.10579 5.11704 5.18340 5.20840 5.24064 5.29694 5.33148 5.44216 5.52531 5.60909 5.68749 5.76682 5.79352 5.86608 5.92549 6.10870 6.12415 6.51571 6.62933 7.58135 7.68491 7.89801 8.33578 8.58850 9.21913 10.83694 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025132 B = 0.001811 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.830110 B =15456.026659 C =16134.534535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.022 4.022 3 O 0.094 5.906 4 N -0.369 5.369 5 C 0.005 3.995 6 C -0.191 4.191 7 C 0.095 3.905 8 N -0.465 5.465 9 C -0.012 4.012 10 C -0.122 4.122 11 C 0.154 3.846 12 H 0.093 0.907 13 C -0.169 4.169 14 N -0.733 5.733 15 C 0.533 3.467 16 O -0.517 6.517 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.007 3.993 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.188 0.812 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.090 0.910 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.807 16.003 12.760 27.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 O 0.030 5.970 4 N -0.073 5.073 5 C -0.174 4.174 6 C -0.195 4.195 7 C -0.033 4.033 8 N -0.187 5.187 9 C -0.141 4.141 10 C -0.141 4.141 11 C 0.048 3.952 12 H 0.111 0.889 13 C -0.227 4.227 14 N -0.387 5.387 15 C 0.320 3.680 16 O -0.391 6.391 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.123 4.123 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.206 0.794 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.109 0.891 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 20.225 15.432 13.278 28.697 hybrid contribution -1.580 0.921 -1.051 2.110 sum 18.645 16.353 12.227 27.651 Atomic orbital electron populations 1.20562 0.84191 1.05267 1.04242 1.24293 0.96168 0.85889 1.02289 1.84803 1.11446 1.33119 1.67642 1.73886 0.97135 1.16875 1.19395 1.24881 0.99698 0.90174 1.02617 1.20833 0.92242 0.96627 1.09797 1.20873 1.01367 0.89731 0.91347 1.68969 1.16233 1.09832 1.23679 1.24376 0.90015 0.98635 1.01043 1.23050 0.94860 0.95184 1.00994 1.20715 0.85995 1.00073 0.88380 0.88945 1.22358 1.02046 1.02176 0.96121 1.46044 1.30957 1.16567 1.45176 1.20312 0.81903 0.83682 0.82148 1.90699 1.72574 1.24358 1.51514 1.23538 0.99293 1.07643 0.99984 1.85393 1.31117 1.11026 1.55895 1.22909 1.15628 1.01981 1.27802 0.90875 1.24997 0.97292 0.94570 0.96769 1.70032 1.32750 1.05695 1.41798 0.86117 0.80254 0.78792 0.80333 1.19610 1.20562 1.20575 1.23882 0.98085 0.90445 0.99839 0.89352 0.89540 0.88670 0.79443 0.89341 0.92059 0.89619 0.89508 0.87187 0.91310 0.92128 0.92127 0.76857 0.89262 0.89241 0.92237 0.89124 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.37 10.30 36.00 0.37 0.00 16 2 C -0.02 -0.16 7.49 -35.30 -0.26 -0.43 16 3 O 0.09 0.92 11.20 17.19 0.19 1.11 16 4 N -0.37 -3.89 12.07 30.35 0.37 -3.52 16 5 C 0.01 0.05 12.16 -17.06 -0.21 -0.16 16 6 C -0.19 -1.45 5.91 -104.42 -0.62 -2.07 16 7 C 0.10 0.57 5.16 -4.98 -0.03 0.54 16 8 N -0.47 -3.17 6.32 -246.09 -1.55 -4.72 16 9 C -0.01 -0.07 4.89 -7.55 -0.04 -0.11 16 10 C -0.12 -0.86 4.11 -90.09 -0.37 -1.23 16 11 C 0.15 1.50 2.76 -67.93 -0.19 1.31 16 12 H 0.09 1.11 7.58 -51.93 -0.39 0.71 16 13 C -0.17 -1.48 8.24 37.16 0.31 -1.18 16 14 N -0.73 -8.59 5.08 -53.80 -0.27 -8.86 16 15 C 0.53 9.26 7.81 -10.99 -0.09 9.18 16 16 O -0.52 -11.09 15.52 5.56 0.09 -11.00 16 17 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 19 C -0.53 -15.01 9.50 30.94 0.29 -14.71 16 20 H 0.07 1.94 7.80 -52.48 -0.41 1.54 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 22 N -0.87 -25.87 13.22 55.49 0.73 -25.13 16 23 Si 0.92 21.15 29.55 -169.99 -5.02 16.13 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 27 C 0.01 0.04 7.11 -7.55 -0.05 -0.01 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.37 4.52 -51.93 -0.23 0.14 16 31 H 0.19 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.09 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.06 0.30 7.30 -51.93 -0.38 -0.08 16 34 H 0.09 0.43 4.15 -51.93 -0.22 0.22 16 35 H 0.09 0.51 7.67 -51.93 -0.40 0.11 16 36 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.42 6.77 -51.93 -0.35 0.07 16 39 H 0.06 0.44 6.32 -51.93 -0.33 0.11 16 40 H 0.40 3.58 8.60 -40.82 -0.35 3.23 16 41 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 42 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.42 6.52 -51.93 -0.34 0.08 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -35.33 380.61 -9.04 -44.36 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.34 Total: -0.60 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -0.75 Total: -9.66 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: -0.73 Total: -42.24 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.28 Total: -9.89 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.33 -9.04 -44.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717542276.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.879 kcal (2) G-P(sol) polarization free energy of solvation -35.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds