Wall clock time and date at job start Tue Mar 31 2020 22:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.41384 * 126.80126 * 2 1 4 4 C 1.35453 * 103.98685 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.77720 * 179.97438 * 4 3 2 6 6 N 1.46907 * 109.46668 * 89.99986 * 5 4 3 7 7 C 1.46907 * 110.99427 * 180.02562 * 6 5 4 8 8 H 1.09003 * 110.63925 * 323.30677 * 7 6 5 9 9 C 1.55157 * 110.71653 * 199.97435 * 7 6 5 10 10 C 1.55121 * 101.48653 * 205.96924 * 9 7 6 11 11 H 1.08999 * 110.50219 * 278.45440 * 10 9 7 12 12 C 1.52997 * 110.34363 * 156.05958 * 10 9 7 13 13 N 1.47426 * 104.71990 * 37.29538 * 10 9 7 14 14 C 1.34780 * 125.64500 * 155.82117 * 13 10 9 15 15 O 1.21280 * 120.00423 * 359.71076 * 14 13 10 16 16 C 1.50701 * 119.99795 * 179.71753 * 14 13 10 17 17 S 1.81002 * 109.47156 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00049 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00026 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99640 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00053 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47315 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47332 * 119.99854 * 22 20 18 25 25 H 1.48499 * 109.47328 * 240.00154 * 22 20 18 26 26 C 1.47021 * 108.70691 * 335.55266 * 13 10 9 27 27 O 1.34042 * 106.44272 * 0.23893 * 4 3 2 28 28 N 1.20914 * 111.57052 * 359.57019 * 27 4 3 29 29 H 1.09000 * 109.47454 * 89.99969 * 1 2 3 30 30 H 1.08999 * 109.47052 * 210.00080 * 1 2 3 31 31 H 1.08999 * 109.47296 * 329.99914 * 1 2 3 32 32 H 1.08002 * 128.00937 * 0.03793 * 3 2 1 33 33 H 1.08997 * 109.47059 * 330.00146 * 5 4 3 34 34 H 1.08997 * 109.47099 * 209.99269 * 5 4 3 35 35 H 1.00899 * 110.99957 * 303.95068 * 6 5 4 36 36 H 1.09007 * 111.00277 * 324.21000 * 9 7 6 37 37 H 1.09003 * 111.00336 * 88.02064 * 9 7 6 38 38 H 1.09004 * 109.47403 * 303.28246 * 12 10 9 39 39 H 1.09000 * 109.47355 * 63.28470 * 12 10 9 40 40 H 1.09005 * 109.47336 * 183.28674 * 12 10 9 41 41 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 42 42 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 43 43 H 0.97010 * 119.99946 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.87932 * 120.69869 * 26 13 10 45 45 H 1.08990 * 109.88539 * 241.87260 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6069 -0.0006 5 6 4.9021 1.3697 -0.0014 6 7 5.3251 1.6177 1.3834 7 6 6.5913 2.3615 1.4218 8 1 7.2495 2.0415 0.6140 9 6 7.2850 2.1936 2.7995 10 6 8.1294 3.4923 2.8805 11 1 9.0573 3.3800 2.3196 12 6 8.4272 3.8430 4.3397 13 7 7.2810 4.5297 2.2663 14 6 7.3636 5.8539 2.5035 15 8 8.1872 6.2798 3.2853 16 6 6.4324 6.8054 1.7975 17 16 6.7885 8.5002 2.3238 18 6 5.5903 9.3742 1.3726 19 1 4.9242 8.8346 0.7156 20 6 5.5030 10.7563 1.4669 21 7 6.3151 11.4138 2.2673 22 14 4.2330 11.6829 0.4580 23 1 3.4490 10.7198 -0.3563 24 1 3.3203 12.4206 1.3679 25 1 4.9205 12.6451 -0.4402 26 6 6.3342 3.8813 1.3472 27 8 3.4537 -0.7253 -0.0063 28 7 2.2868 -1.0423 -0.0006 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 2.0709 2.1744 0.0006 33 1 4.7647 2.3210 -0.5152 34 1 5.6657 0.7859 -0.5154 35 1 4.6060 2.1016 1.9000 36 1 6.5507 2.1502 3.6040 37 1 7.9251 1.3114 2.8097 38 1 7.4905 3.9371 4.8892 39 1 9.0330 3.0547 4.7865 40 1 8.9701 4.7872 4.3830 41 1 6.5755 6.7215 0.7201 42 1 5.4009 6.5569 2.0474 43 1 6.2538 12.3797 2.3335 44 1 5.3113 4.0997 1.6540 45 1 6.5023 4.2362 0.3306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717815774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:29 Heat of formation + Delta-G solvation = 30.778955 kcal Electronic energy + Delta-G solvation = -26382.253165 eV Core-core repulsion = 22529.430926 eV Total energy + Delta-G solvation = -3852.822239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.23368 -40.23893 -37.94837 -35.84775 -35.06621 -32.58058 -32.46826 -32.22635 -29.64437 -29.03431 -28.70226 -25.97072 -25.68152 -25.47639 -23.38030 -22.26444 -21.33048 -20.43965 -19.02782 -17.95153 -17.74227 -17.65944 -16.93694 -16.33223 -15.76584 -15.16334 -15.07866 -14.84888 -14.81870 -14.41874 -14.25310 -13.75126 -13.71367 -13.50969 -13.40871 -13.18531 -13.07471 -12.83920 -12.65388 -12.43590 -12.21536 -12.13269 -11.88222 -11.67454 -11.42722 -11.18189 -11.10662 -11.05755 -10.92234 -10.79610 -10.34564 -9.85307 -9.84494 -9.29600 -9.11508 -8.96036 -8.54218 -8.27549 -6.54595 -6.25915 -3.96632 1.07021 1.86481 2.69207 2.84178 3.01618 3.17959 3.21814 3.27204 3.51419 3.70523 3.84654 4.03332 4.15757 4.25506 4.30874 4.58048 4.66278 4.76376 4.83646 4.93359 4.98518 5.05160 5.07974 5.08652 5.09370 5.13235 5.30559 5.36905 5.38808 5.41441 5.45124 5.58480 5.64610 5.71042 5.74566 5.77597 5.83523 6.06626 6.13160 6.29758 6.38813 6.64272 6.73468 7.55173 7.63605 7.95072 8.30827 8.53713 9.19454 10.81537 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009405 B = 0.002622 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2976.471191 B =10675.017329 C =13304.928470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.014 3.986 3 C -0.226 4.226 4 C -0.021 4.021 5 C 0.134 3.866 6 N -0.671 5.671 7 C 0.078 3.922 8 H 0.101 0.899 9 C -0.115 4.115 10 C 0.135 3.865 11 H 0.074 0.926 12 C -0.166 4.166 13 N -0.621 5.621 14 C 0.550 3.450 15 O -0.509 6.509 16 C -0.147 4.147 17 S -0.059 6.059 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.280 1.280 26 C 0.074 3.926 27 O 0.108 5.892 28 N -0.366 5.366 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.172 0.828 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.350 0.650 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.268 0.732 44 H 0.067 0.933 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.364 -23.855 -4.898 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.144 4.144 3 C -0.249 4.249 4 C -0.086 4.086 5 C 0.004 3.996 6 N -0.303 5.303 7 C -0.033 4.033 8 H 0.119 0.881 9 C -0.154 4.154 10 C 0.031 3.969 11 H 0.092 0.908 12 C -0.223 4.223 13 N -0.359 5.359 14 C 0.339 3.661 15 O -0.383 6.383 16 C -0.298 4.298 17 S 0.167 5.833 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.052 4.052 27 O 0.041 5.959 28 N -0.070 5.070 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.189 0.811 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.170 0.830 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.015 -24.903 -3.581 25.478 hybrid contribution -2.344 1.885 -1.922 3.569 sum -6.359 -23.019 -5.504 24.507 Atomic orbital electron populations 1.20175 0.85909 1.03906 1.03418 1.23616 0.99132 0.88787 1.02914 1.22518 0.91288 1.01333 1.09716 1.24274 0.97682 0.83948 1.02651 1.20410 0.90389 0.97382 0.91392 1.60605 1.05838 1.52049 1.11823 1.22692 0.91320 0.89582 0.99695 0.88121 1.22919 0.99015 0.97045 0.96397 1.21934 0.93533 0.86142 0.95266 0.90823 1.22169 1.02544 1.03757 0.93840 1.48493 1.36818 1.05541 1.45078 1.19982 0.84161 0.80280 0.81723 1.90650 1.36873 1.75782 1.35011 1.23520 1.00891 1.02477 1.02904 1.85407 1.48647 0.90558 1.58665 1.22881 1.21371 0.94312 1.29752 0.90981 1.24995 0.96429 0.96568 0.95604 1.70025 1.36159 1.08418 1.35577 0.86118 0.80414 0.79425 0.79539 1.19654 1.20531 1.20537 1.22781 0.94018 0.93843 0.94537 1.84831 1.21436 1.22675 1.66946 1.73867 0.89392 1.24181 1.19552 0.90149 0.90547 0.89888 0.81068 0.90965 0.88100 0.82966 0.89962 0.89483 0.92657 0.92337 0.89087 0.89524 0.89583 0.92197 0.91480 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.47 36.00 0.38 -0.08 16 2 C 0.01 0.13 7.33 -82.10 -0.60 -0.48 16 3 C -0.23 -1.74 11.06 -39.38 -0.44 -2.17 16 4 C -0.02 -0.17 7.00 -35.30 -0.25 -0.41 16 5 C 0.13 0.76 6.10 -4.97 -0.03 0.73 16 6 N -0.67 -4.39 6.35 -106.05 -0.67 -5.06 16 7 C 0.08 0.54 3.24 -65.87 -0.21 0.33 16 8 H 0.10 0.59 7.89 -51.93 -0.41 0.18 16 9 C -0.12 -0.92 6.19 -24.47 -0.15 -1.07 16 10 C 0.13 1.50 3.77 -66.30 -0.25 1.25 16 11 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 12 C -0.17 -2.07 8.71 37.16 0.32 -1.74 16 13 N -0.62 -8.32 3.24 -162.93 -0.53 -8.84 16 14 C 0.55 10.14 7.65 -10.98 -0.08 10.05 16 15 O -0.51 -11.17 13.51 5.56 0.08 -11.10 16 16 C -0.15 -2.93 5.35 36.01 0.19 -2.74 16 17 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 18 C -0.53 -14.99 9.50 30.94 0.29 -14.70 16 19 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 22 Si 0.92 21.07 29.55 -169.99 -5.02 16.04 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 C 0.07 0.70 6.14 -3.07 -0.02 0.68 16 27 O 0.11 1.11 11.20 17.17 0.19 1.30 16 28 N -0.37 -4.06 12.07 33.42 0.40 -3.65 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 34 H 0.10 0.48 8.08 -51.93 -0.42 0.07 16 35 H 0.35 2.32 8.15 -39.29 -0.32 2.00 16 36 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 1.45 5.89 -51.93 -0.31 1.14 16 41 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 42 H 0.09 1.60 8.14 -51.91 -0.42 1.17 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.07 0.61 7.57 -51.93 -0.39 0.22 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 388.41 15.07 5.85 5.85 Total: -1.00 -34.78 388.41 -9.00 -43.79 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.88 Total: -1.04 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -0.94 Total: -8.39 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: -0.06 Total: -42.66 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.27 Total: -9.79 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.78 -9.00 -43.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717815774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.566 kcal (2) G-P(sol) polarization free energy of solvation -34.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds