Wall clock time and date at job start Tue Mar 31 2020 22:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.41384 * 126.80126 * 2 1 4 4 C 1.35453 * 103.98685 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.77720 * 179.97438 * 4 3 2 6 6 N 1.46907 * 109.46668 * 89.99986 * 5 4 3 7 7 C 1.46907 * 110.99427 * 180.02562 * 6 5 4 8 8 H 1.09003 * 110.63925 * 323.30677 * 7 6 5 9 9 C 1.55157 * 110.71653 * 199.97435 * 7 6 5 10 10 C 1.55121 * 101.48653 * 205.96924 * 9 7 6 11 11 H 1.08999 * 110.50219 * 278.45440 * 10 9 7 12 12 C 1.52997 * 110.34363 * 156.05958 * 10 9 7 13 13 N 1.47426 * 104.71990 * 37.29538 * 10 9 7 14 14 C 1.34780 * 125.64500 * 155.82117 * 13 10 9 15 15 O 1.21280 * 120.00423 * 359.71076 * 14 13 10 16 16 C 1.50701 * 119.99795 * 179.71753 * 14 13 10 17 17 S 1.81002 * 109.47156 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00049 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00026 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99640 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00053 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47315 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47332 * 119.99854 * 22 20 18 25 25 H 1.48499 * 109.47328 * 240.00154 * 22 20 18 26 26 C 1.47021 * 108.70691 * 335.55266 * 13 10 9 27 27 O 1.34042 * 106.44272 * 0.23893 * 4 3 2 28 28 N 1.20914 * 111.57052 * 359.57019 * 27 4 3 29 29 H 1.09000 * 109.47454 * 89.99969 * 1 2 3 30 30 H 1.08999 * 109.47052 * 210.00080 * 1 2 3 31 31 H 1.08999 * 109.47296 * 329.99914 * 1 2 3 32 32 H 1.08002 * 128.00937 * 0.03793 * 3 2 1 33 33 H 1.08997 * 109.47059 * 330.00146 * 5 4 3 34 34 H 1.08997 * 109.47099 * 209.99269 * 5 4 3 35 35 H 1.00899 * 110.99957 * 303.95068 * 6 5 4 36 36 H 1.09007 * 111.00277 * 324.21000 * 9 7 6 37 37 H 1.09003 * 111.00336 * 88.02064 * 9 7 6 38 38 H 1.09004 * 109.47403 * 303.28246 * 12 10 9 39 39 H 1.09000 * 109.47355 * 63.28470 * 12 10 9 40 40 H 1.09005 * 109.47336 * 183.28674 * 12 10 9 41 41 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 42 42 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 43 43 H 0.97010 * 119.99946 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.87932 * 120.69869 * 26 13 10 45 45 H 1.08990 * 109.88539 * 241.87260 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6069 -0.0006 5 6 4.9021 1.3697 -0.0014 6 7 5.3251 1.6177 1.3834 7 6 6.5913 2.3615 1.4218 8 1 7.2495 2.0415 0.6140 9 6 7.2850 2.1936 2.7995 10 6 8.1294 3.4923 2.8805 11 1 9.0573 3.3800 2.3196 12 6 8.4272 3.8430 4.3397 13 7 7.2810 4.5297 2.2663 14 6 7.3636 5.8539 2.5035 15 8 8.1872 6.2798 3.2853 16 6 6.4324 6.8054 1.7975 17 16 6.7885 8.5002 2.3238 18 6 5.5903 9.3742 1.3726 19 1 4.9242 8.8346 0.7156 20 6 5.5030 10.7563 1.4669 21 7 6.3151 11.4138 2.2673 22 14 4.2330 11.6829 0.4580 23 1 3.4490 10.7198 -0.3563 24 1 3.3203 12.4206 1.3679 25 1 4.9205 12.6451 -0.4402 26 6 6.3342 3.8813 1.3472 27 8 3.4537 -0.7253 -0.0063 28 7 2.2868 -1.0423 -0.0006 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 2.0709 2.1744 0.0006 33 1 4.7647 2.3210 -0.5152 34 1 5.6657 0.7859 -0.5154 35 1 4.6060 2.1016 1.9000 36 1 6.5507 2.1502 3.6040 37 1 7.9251 1.3114 2.8097 38 1 7.4905 3.9371 4.8892 39 1 9.0330 3.0547 4.7865 40 1 8.9701 4.7872 4.3830 41 1 6.5755 6.7215 0.7201 42 1 5.4009 6.5569 2.0474 43 1 6.2538 12.3797 2.3335 44 1 5.3113 4.0997 1.6540 45 1 6.5023 4.2362 0.3306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717815774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:28 Heat of formation + Delta-G solvation = 6.828823 kcal Electronic energy + Delta-G solvation = -26383.291721 eV Core-core repulsion = 22529.430926 eV Total energy + Delta-G solvation = -3853.860795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.87939 -41.29714 -39.00634 -36.62377 -35.66866 -34.59468 -33.43159 -33.18532 -30.47599 -30.04755 -29.55889 -27.67450 -26.74526 -26.30037 -24.01409 -23.26774 -21.98882 -21.03025 -20.40500 -19.43671 -18.62151 -18.41055 -17.95297 -17.46251 -16.89217 -16.61054 -16.30543 -16.02174 -15.77185 -15.36183 -15.09293 -14.88038 -14.59683 -14.34967 -14.21408 -14.10922 -13.96898 -13.77373 -13.63243 -13.41077 -13.20890 -13.12900 -12.99862 -12.91503 -12.83585 -12.57824 -12.42878 -12.02047 -12.01190 -11.71788 -11.69138 -11.16692 -10.93449 -10.63850 -10.47422 -10.27848 -9.73391 -9.46076 -8.68252 -8.35549 -6.13796 0.46942 1.24179 1.26654 1.41046 1.45286 1.56376 1.60280 2.07698 2.17399 2.26594 2.98841 3.06759 3.26672 3.30707 3.44859 3.55967 3.64195 3.96098 4.04263 4.11584 4.14911 4.20439 4.27728 4.30239 4.37713 4.40889 4.47240 4.59885 4.63676 4.65888 4.68405 4.75000 4.78932 4.92191 4.97097 4.97611 5.08056 5.24370 5.25925 5.30108 5.40812 5.60620 5.86695 6.18898 6.22133 6.44322 7.05800 7.18101 7.33086 8.73890 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009405 B = 0.002622 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2976.471191 B =10675.017329 C =13304.928470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.004 3.996 3 C -0.230 4.230 4 C -0.020 4.020 5 C 0.136 3.864 6 N -0.673 5.673 7 C 0.094 3.906 8 H 0.122 0.878 9 C -0.104 4.104 10 C 0.128 3.872 11 H 0.083 0.917 12 C -0.162 4.162 13 N -0.612 5.612 14 C 0.546 3.454 15 O -0.557 6.557 16 C -0.120 4.120 17 S -0.151 6.151 18 C -0.543 4.543 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.255 1.255 24 H -0.274 1.274 25 H -0.274 1.274 26 C 0.064 3.936 27 O 0.088 5.912 28 N -0.402 5.402 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.193 0.807 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.351 0.649 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.043 0.957 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.271 0.729 44 H 0.073 0.927 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.861 -25.389 -6.831 27.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.154 4.154 3 C -0.252 4.252 4 C -0.085 4.085 5 C 0.007 3.993 6 N -0.305 5.305 7 C -0.017 4.017 8 H 0.140 0.860 9 C -0.142 4.142 10 C 0.026 3.974 11 H 0.101 0.899 12 C -0.220 4.220 13 N -0.348 5.348 14 C 0.334 3.666 15 O -0.435 6.435 16 C -0.271 4.271 17 S 0.076 5.924 18 C -0.691 4.691 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.179 1.179 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.061 4.061 27 O 0.024 5.976 28 N -0.109 5.109 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.118 0.882 32 H 0.210 0.790 33 H 0.109 0.891 34 H 0.131 0.869 35 H 0.171 0.829 36 H 0.095 0.905 37 H 0.128 0.872 38 H 0.062 0.938 39 H 0.103 0.897 40 H 0.070 0.930 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.516 -26.504 -5.537 27.632 hybrid contribution -1.866 2.223 -1.300 3.180 sum -7.382 -24.281 -6.836 26.283 Atomic orbital electron populations 1.20300 0.84271 1.04606 1.04296 1.24190 1.00446 0.88917 1.01871 1.22837 0.90996 1.01998 1.09392 1.24722 0.98770 0.83234 1.01736 1.20551 0.89689 0.98028 0.91032 1.60572 1.05745 1.51695 1.12472 1.22610 0.91794 0.87595 0.99662 0.86001 1.22857 0.98744 0.95686 0.96942 1.22187 0.94360 0.86759 0.94104 0.89860 1.22086 1.01833 1.02727 0.95312 1.48433 1.37253 1.04214 1.44880 1.19714 0.83589 0.81906 0.81439 1.90650 1.38671 1.77094 1.37058 1.23313 1.02118 0.97877 1.03772 1.85603 1.49895 0.96700 1.60182 1.23202 1.21311 0.94914 1.29698 0.89956 1.26138 0.98686 0.97642 0.96746 1.70191 1.38285 1.08831 1.37475 0.84902 0.77349 0.77914 0.77763 1.17860 1.19983 1.19990 1.23164 0.93352 0.95417 0.94130 1.84782 1.21289 1.23957 1.67536 1.73864 0.89978 1.25539 1.21522 0.89108 0.90788 0.88241 0.79001 0.89116 0.86863 0.82921 0.90468 0.87214 0.93813 0.89653 0.92982 0.87798 0.88005 0.92002 0.90827 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.47 71.23 0.75 -0.07 16 2 C 0.00 0.06 7.33 43.58 0.32 0.38 16 3 C -0.23 -3.01 11.06 22.40 0.25 -2.77 16 4 C -0.02 -0.28 7.00 25.04 0.18 -0.10 16 5 C 0.14 1.05 6.10 85.56 0.52 1.57 16 6 N -0.67 -6.34 6.35 -489.42 -3.11 -9.44 16 7 C 0.09 0.93 3.24 46.10 0.15 1.08 16 8 H 0.12 0.81 7.89 -2.39 -0.02 0.79 16 9 C -0.10 -1.31 6.19 32.06 0.20 -1.11 16 10 C 0.13 2.61 3.77 45.54 0.17 2.78 16 11 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 12 C -0.16 -4.00 8.71 71.98 0.63 -3.37 16 13 N -0.61 -15.39 3.24 -787.77 -2.55 -17.94 16 14 C 0.55 20.11 7.65 87.66 0.67 20.78 16 15 O -0.56 -25.43 13.51 -3.03 -0.04 -25.47 16 16 C -0.12 -4.70 5.35 71.24 0.38 -4.32 16 17 S -0.15 -8.32 20.57 -56.49 -1.16 -9.48 16 18 C -0.54 -30.56 9.50 67.96 0.65 -29.92 16 19 H 0.08 4.29 7.80 -2.91 -0.02 4.26 16 20 C 0.01 0.71 5.49 84.86 0.47 1.17 16 21 N -0.91 -55.55 13.22 21.65 0.29 -55.27 16 22 Si 1.00 42.83 29.55 68.60 2.03 44.85 16 23 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 C 0.06 0.99 6.14 86.73 0.53 1.52 16 27 O 0.09 1.72 11.20 71.62 0.80 2.53 16 28 N -0.40 -8.67 12.07 -49.56 -0.60 -9.26 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.19 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.09 0.42 8.13 -2.39 -0.02 0.40 16 34 H 0.11 0.64 8.08 -2.39 -0.02 0.62 16 35 H 0.35 3.46 8.15 -89.70 -0.73 2.73 16 36 H 0.08 1.10 8.07 -2.38 -0.02 1.08 16 37 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.73 5.89 -2.38 -0.01 1.71 16 41 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 42 H 0.10 3.64 8.14 -2.40 -0.02 3.62 16 43 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 44 H 0.07 1.09 7.57 -2.39 -0.02 1.07 16 45 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -79.97 388.41 1.78 -78.19 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.27 Total: 13.65 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 5.85 Total: -12.36 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -5.97 Total: -91.91 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.76 Total: -22.94 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -79.97 1.78 -78.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717815774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.020 kcal (2) G-P(sol) polarization free energy of solvation -79.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds