Wall clock time and date at job start Tue Mar 31 2020 22:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30182 * 126.80141 * 2 1 4 4 O 1.20921 * 111.60216 * 180.25684 * 3 2 1 5 5 C 1.34045 * 111.56808 * 359.74452 * 4 3 2 6 6 C 1.35448 * 106.44680 * 0.02562 * 5 4 3 7 7 C 1.50698 * 128.00332 * 179.97438 * 6 5 4 8 8 N 1.46903 * 109.47044 * 260.02214 * 7 6 5 9 9 C 1.46900 * 111.00025 * 180.02562 * 8 7 6 10 10 H 1.08998 * 110.63801 * 323.31173 * 9 8 7 11 11 C 1.54321 * 110.72194 * 86.45321 * 9 8 7 12 12 N 1.47026 * 107.26791 * 140.55531 * 11 9 8 13 13 C 1.34781 * 125.64203 * 181.03648 * 12 11 9 14 14 O 1.21278 * 120.00175 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99396 * 180.02562 * 13 12 11 16 16 S 1.81007 * 109.46919 * 179.97438 * 15 13 12 17 17 C 1.76197 * 99.99931 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00267 * 359.97438 * 17 16 15 19 19 C 1.38802 * 120.00002 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99850 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00038 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47031 * 90.00034 * 21 19 17 23 23 H 1.48498 * 109.47354 * 210.00477 * 21 19 17 24 24 H 1.48503 * 109.46954 * 330.00656 * 21 19 17 25 25 C 1.47419 * 108.70576 * 1.06162 * 12 11 9 26 26 C 1.54905 * 104.92834 * 335.81449 * 25 12 11 27 27 H 1.09004 * 111.00578 * 278.99532 * 26 25 12 28 28 C 1.53000 * 111.00859 * 155.14142 * 26 25 12 29 29 H 1.09007 * 109.47150 * 270.16154 * 1 2 3 30 30 H 1.08996 * 109.47527 * 30.16244 * 1 2 3 31 31 H 1.09004 * 109.47297 * 150.16610 * 1 2 3 32 32 H 1.08001 * 126.77151 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.47092 * 140.02849 * 7 6 5 34 34 H 1.08994 * 109.47641 * 20.02635 * 7 6 5 35 35 H 1.00907 * 110.99826 * 303.95642 * 8 7 6 36 36 H 1.08998 * 109.88101 * 21.14049 * 11 9 8 37 37 H 1.08997 * 110.01327 * 260.04416 * 11 9 8 38 38 H 1.08991 * 109.47539 * 300.00189 * 15 13 12 39 39 H 1.09002 * 109.47279 * 60.00651 * 15 13 12 40 40 H 0.96996 * 119.99365 * 179.97438 * 20 19 17 41 41 H 1.09002 * 110.36926 * 94.70918 * 25 12 11 42 42 H 1.08995 * 110.36556 * 216.92202 * 25 12 11 43 43 H 1.09000 * 109.47194 * 61.45060 * 28 26 25 44 44 H 1.09001 * 109.47578 * 181.45505 * 28 26 25 45 45 H 1.09003 * 109.46933 * 301.45233 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0050 5 6 3.6024 -0.6068 -0.0036 6 6 2.3539 -1.1320 0.0026 7 6 1.9591 -2.5864 0.0061 8 7 1.5931 -2.9976 -1.3559 9 6 1.2011 -4.4129 -1.3910 10 1 1.8118 -4.9979 -0.7033 11 6 -0.2979 -4.5727 -1.0611 12 7 -0.8316 -5.6157 -1.9494 13 6 -2.1115 -6.0362 -1.9866 14 8 -2.9336 -5.5434 -1.2436 15 6 -2.5210 -7.1190 -2.9515 16 16 -4.2884 -7.4601 -2.7609 17 6 -4.4881 -8.7251 -3.9711 18 1 -3.6408 -9.0519 -4.5556 19 6 -5.7347 -9.3008 -4.1741 20 7 -5.8839 -10.2454 -5.0786 21 14 -7.2004 -8.7351 -3.1637 22 1 -7.8800 -7.6144 -3.8619 23 1 -8.1513 -9.8633 -2.9962 24 1 -6.7351 -8.2777 -1.8297 25 6 0.2653 -6.1256 -2.7921 26 6 1.3021 -4.9756 -2.8366 27 1 1.0177 -4.2212 -3.5703 28 6 2.7058 -5.5133 -3.1220 29 1 -0.3634 0.0029 1.0277 30 1 -0.3634 0.8885 -0.5163 31 1 -0.3634 -0.8915 -0.5113 32 1 4.5339 -1.1534 -0.0075 33 1 1.1068 -2.7299 0.6703 34 1 2.7972 -3.1896 0.3549 35 1 0.8608 -2.4106 -1.7264 36 1 -0.8189 -3.6320 -1.2391 37 1 -0.4209 -4.8733 -0.0207 38 1 -2.3219 -6.7910 -3.9716 39 1 -1.9520 -8.0252 -2.7436 40 1 -6.7550 -10.6480 -5.2201 41 1 0.7056 -7.0162 -2.3438 42 1 -0.0987 -6.3471 -3.7953 43 1 2.7163 -6.0025 -4.0960 44 1 3.4180 -4.6881 -3.1222 45 1 2.9831 -6.2323 -2.3512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724936822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:09 Heat of formation + Delta-G solvation = 25.993485 kcal Electronic energy + Delta-G solvation = -26460.959737 eV Core-core repulsion = 22607.929984 eV Total energy + Delta-G solvation = -3853.029753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.30473 -40.23112 -38.15420 -36.39608 -34.45501 -32.86320 -32.45984 -32.12138 -30.23470 -29.12828 -28.09624 -26.53347 -25.82002 -25.53229 -22.61176 -21.94338 -21.69300 -20.64876 -19.54062 -17.96117 -17.86355 -17.67882 -16.92322 -16.50092 -15.92015 -15.38585 -15.24854 -15.12824 -14.91931 -14.17022 -13.94070 -13.78910 -13.74078 -13.66732 -13.60048 -13.16620 -12.92895 -12.86104 -12.84831 -12.80705 -12.48767 -12.30280 -11.95390 -11.56541 -11.38863 -11.29310 -11.28489 -11.03819 -10.99194 -10.63777 -10.27577 -9.93431 -9.87916 -9.60239 -9.02704 -8.95217 -8.64197 -8.52912 -6.95203 -6.31136 -4.03261 1.10977 1.76546 2.62540 2.86706 2.88268 3.14113 3.31279 3.48413 3.55257 3.66922 3.84640 4.09417 4.15457 4.18674 4.31055 4.45686 4.54494 4.66097 4.68669 4.85591 4.98730 5.01581 5.04445 5.07871 5.09287 5.14497 5.21145 5.29017 5.31547 5.34154 5.40797 5.43486 5.51063 5.54794 5.65480 5.72261 5.73872 5.88056 5.97319 5.99134 6.23615 6.47320 6.79403 7.49470 7.89802 7.91932 8.36768 8.39354 9.14943 10.78013 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021112 B = 0.002120 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.931341 B =13207.335620 C =14239.354901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.023 3.977 3 N -0.366 5.366 4 O 0.096 5.904 5 C -0.040 4.040 6 C -0.199 4.199 7 C 0.133 3.867 8 N -0.669 5.669 9 C 0.080 3.920 10 H 0.098 0.902 11 C 0.082 3.918 12 N -0.622 5.622 13 C 0.547 3.453 14 O -0.518 6.518 15 C -0.117 4.117 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.879 5.879 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.236 1.236 25 C 0.100 3.900 26 C -0.091 4.091 27 H 0.089 0.911 28 C -0.135 4.135 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.217 0.783 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.346 0.654 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.019 15.949 9.051 29.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.137 4.137 3 N -0.072 5.072 4 O 0.032 5.968 5 C -0.122 4.122 6 C -0.204 4.204 7 C 0.004 3.996 8 N -0.300 5.300 9 C -0.031 4.031 10 H 0.116 0.884 11 C -0.043 4.043 12 N -0.359 5.359 13 C 0.335 3.665 14 O -0.393 6.393 15 C -0.268 4.268 16 S 0.083 5.917 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.516 5.516 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.160 1.160 25 C -0.023 4.023 26 C -0.110 4.110 27 H 0.107 0.893 28 C -0.193 4.193 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.233 0.767 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.166 0.834 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 22.019 17.727 9.879 29.945 hybrid contribution -0.676 -1.408 -0.253 1.582 sum 21.342 16.319 9.626 28.539 Atomic orbital electron populations 1.20193 0.85926 1.03918 1.03598 1.23569 0.99025 0.88502 1.02570 1.73874 0.89429 1.24175 1.19737 1.84832 1.21568 1.23092 1.67290 1.25818 1.00741 0.83495 1.02184 1.21124 0.92456 0.97034 1.09739 1.20159 1.00750 0.88501 0.90169 1.60660 1.46073 1.02614 1.20654 1.22839 0.92900 0.89383 0.97949 0.88357 1.22664 0.94380 0.92242 0.95003 1.48345 1.08192 1.39675 1.39714 1.20040 0.79828 0.82906 0.83736 1.90705 1.49626 1.57039 1.41891 1.23251 1.03507 0.99162 1.00850 1.84795 1.02703 1.50799 1.53353 1.22296 0.99827 1.22201 1.22513 0.89355 1.24714 0.98338 0.93739 0.94530 1.69938 1.24807 1.24781 1.32068 0.86735 0.82852 0.79235 0.83033 1.19198 1.19909 1.15951 1.22480 0.87045 0.96799 0.96003 1.22384 0.95520 0.96895 0.96235 0.89256 1.21627 0.94904 1.01072 1.01672 0.89988 0.90220 0.90291 0.76668 0.93225 0.89285 0.83429 0.91779 0.91587 0.88542 0.88490 0.91922 0.91000 0.89928 0.92240 0.91597 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.39 36.00 0.37 -0.17 16 2 C 0.02 0.20 7.33 -82.10 -0.60 -0.40 16 3 N -0.37 -3.77 12.07 33.42 0.40 -3.36 16 4 O 0.10 0.83 11.20 17.16 0.19 1.02 16 5 C -0.04 -0.23 12.26 29.74 0.36 0.13 16 6 C -0.20 -1.36 5.84 -104.42 -0.61 -1.97 16 7 C 0.13 0.75 6.03 -4.98 -0.03 0.72 16 8 N -0.67 -4.26 6.35 -105.89 -0.67 -4.93 16 9 C 0.08 0.56 2.72 -65.72 -0.18 0.38 16 10 H 0.10 0.61 7.78 -51.93 -0.40 0.21 16 11 C 0.08 0.85 6.52 -3.06 -0.02 0.83 16 12 N -0.62 -8.14 3.33 -170.53 -0.57 -8.71 16 13 C 0.55 9.87 7.87 -10.98 -0.09 9.78 16 14 O -0.52 -11.29 16.19 5.56 0.09 -11.20 16 15 C -0.12 -2.28 5.16 36.01 0.19 -2.09 16 16 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 17 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16 18 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 19 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 20 N -0.88 -26.37 13.97 55.49 0.78 -25.59 16 21 Si 0.86 21.70 27.74 -169.99 -4.71 16.99 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 25 C 0.10 0.97 6.15 -2.53 -0.02 0.95 16 26 C -0.09 -0.67 3.34 -88.31 -0.29 -0.96 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 C -0.14 -0.80 9.31 37.16 0.35 -0.45 16 29 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.48 7.76 -51.93 -0.40 0.08 16 32 H 0.22 0.39 8.06 -52.49 -0.42 -0.03 16 33 H 0.05 0.29 8.13 -51.93 -0.42 -0.13 16 34 H 0.09 0.39 8.08 -51.93 -0.42 -0.03 16 35 H 0.35 2.42 7.76 -39.29 -0.31 2.11 16 36 H 0.06 0.69 7.57 -51.93 -0.39 0.30 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.10 1.75 7.85 -51.92 -0.41 1.34 16 39 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 40 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.07 0.63 8.04 -51.93 -0.42 0.21 16 42 H 0.08 0.81 7.47 -51.93 -0.39 0.42 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.31 8.12 -51.93 -0.42 -0.12 16 LS Contribution 388.74 15.07 5.86 5.86 Total: -1.00 -35.13 388.74 -7.92 -43.05 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.94 Total: -2.33 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -0.35 Total: -5.18 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -0.06 Total: -42.60 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.28 Total: -10.18 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.99 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.13 -7.92 -43.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724936822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.045 kcal (2) G-P(sol) polarization free energy of solvation -35.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds