Wall clock time and date at job start Tue Mar 31 2020 22:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32771 * 123.45807 * 2 1 4 4 S 1.75501 * 110.57374 * 180.23214 * 3 2 1 5 5 C 1.70446 * 92.44902 * 359.73995 * 4 3 2 6 6 C 1.36010 * 110.81403 * 0.02562 * 5 4 3 7 7 C 1.47193 * 123.46002 * 179.97438 * 6 5 4 8 8 O 1.21638 * 119.99813 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00193 * 0.02562 * 7 6 5 10 10 C 1.46497 * 120.00383 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46725 * 324.99787 * 10 9 7 12 12 C 1.52992 * 109.47081 * 84.99495 * 10 9 7 13 13 C 1.52997 * 109.47188 * 204.99951 * 10 9 7 14 14 H 1.09002 * 109.47153 * 299.99573 * 13 10 9 15 15 C 1.53000 * 109.47060 * 59.99892 * 13 10 9 16 16 N 1.46896 * 109.46848 * 179.97438 * 13 10 9 17 17 C 1.46903 * 110.99908 * 154.99970 * 16 13 10 18 18 C 1.50697 * 109.47337 * 179.97438 * 17 16 13 19 19 O 1.21293 * 120.00073 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00129 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99975 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00240 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99729 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00486 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99893 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47132 * 60.00281 * 25 23 21 27 27 H 1.48498 * 109.47370 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47192 * 300.00652 * 25 23 21 29 29 H 1.09002 * 109.46778 * 270.22849 * 1 2 3 30 30 H 1.08997 * 109.47019 * 30.22896 * 1 2 3 31 31 H 1.09004 * 109.47054 * 150.23300 * 1 2 3 32 32 H 1.07995 * 124.71521 * 359.94114 * 3 2 1 33 33 H 1.07997 * 124.59397 * 179.97438 * 5 4 3 34 34 H 0.97004 * 119.99693 * 0.02562 * 9 7 6 35 35 H 1.09001 * 109.47066 * 180.02562 * 12 10 9 36 36 H 1.08996 * 109.47747 * 300.00111 * 12 10 9 37 37 H 1.09002 * 109.47103 * 60.00523 * 12 10 9 38 38 H 1.09004 * 109.46724 * 180.02562 * 15 13 10 39 39 H 1.09001 * 109.47194 * 299.99650 * 15 13 10 40 40 H 1.08992 * 109.47399 * 59.99823 * 15 13 10 41 41 H 1.00895 * 111.00219 * 31.05065 * 16 13 10 42 42 H 1.09003 * 109.46856 * 300.00136 * 17 16 13 43 43 H 1.09001 * 109.47072 * 60.00127 * 17 16 13 44 44 H 0.96999 * 119.99756 * 0.02562 * 20 18 17 45 45 H 0.97000 * 120.00533 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9498 0.7164 -0.0067 5 6 3.6411 -0.9599 -0.0016 6 6 2.3033 -1.2049 0.0042 7 6 1.7262 -2.5590 0.0090 8 8 0.5187 -2.7055 0.0137 9 7 2.5358 -3.6366 0.0083 10 6 1.9615 -4.9843 0.0125 11 1 1.0466 -4.9875 0.6050 12 6 1.6411 -5.4066 -1.4227 13 6 2.9663 -5.9649 0.6205 14 1 3.8812 -5.9617 0.0280 15 6 3.2866 -5.5425 2.0557 16 7 2.3901 -7.3161 0.6253 17 6 3.4452 -8.3383 0.6236 18 6 2.8175 -9.7083 0.6292 19 8 1.6099 -9.8221 0.6336 20 7 3.5979 -10.8072 0.6282 21 6 3.0267 -12.0535 0.6328 22 1 1.9515 -12.1548 0.6367 23 6 3.8313 -13.1864 0.6323 24 7 5.1396 -13.0632 0.6280 25 14 3.0532 -14.8846 0.6392 26 1 2.2059 -15.0458 -0.5697 27 1 4.1197 -15.9178 0.6381 28 1 2.2151 -15.0401 1.8553 29 1 -0.3633 0.0041 1.0277 30 1 -0.3633 0.8879 -0.5174 31 1 -0.3633 -0.8921 -0.5102 32 1 1.8375 2.1102 -0.0009 33 1 4.4044 -1.7239 -0.0037 34 1 3.4987 -3.5197 0.0049 35 1 1.2134 -6.4092 -1.4195 36 1 0.9253 -4.7081 -1.8559 37 1 2.5561 -5.4034 -2.0152 38 1 4.0028 -6.2409 2.4887 39 1 3.7139 -4.5397 2.0526 40 1 2.3717 -5.5456 2.6482 41 1 1.7617 -7.4440 -0.1536 42 1 4.0606 -8.2238 -0.2689 43 1 4.0669 -8.2203 1.5111 44 1 4.5636 -10.7162 0.6242 45 1 5.7012 -13.8540 0.6280 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725086302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:53 Heat of formation + Delta-G solvation = -44.969655 kcal Electronic energy + Delta-G solvation = -26360.608567 eV Core-core repulsion = 22504.501621 eV Total energy + Delta-G solvation = -3856.106945 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.42372 -38.62338 -37.82670 -36.89275 -34.55245 -33.82734 -31.98338 -31.22647 -30.27174 -29.82898 -27.93890 -26.41134 -24.92877 -24.24912 -23.19808 -21.08987 -20.61938 -19.37361 -19.04556 -18.14317 -17.89300 -17.31545 -16.37110 -16.10348 -15.44650 -15.28856 -14.75964 -14.50735 -14.27837 -14.10391 -13.88173 -13.73403 -13.63025 -13.51322 -13.46347 -13.05300 -12.89894 -12.47959 -12.41187 -12.33347 -12.17299 -11.92856 -11.69041 -11.59058 -11.45346 -11.33261 -11.26985 -11.02541 -10.63684 -10.44322 -10.21672 -9.98786 -9.50375 -9.37252 -9.25799 -8.71876 -8.46616 -8.11545 -7.96645 -6.42058 -3.82882 0.36382 1.13981 1.51196 1.64452 2.86621 3.10544 3.20248 3.25864 3.30549 3.90047 4.10067 4.23789 4.32783 4.49522 4.68742 4.78956 4.83221 4.91317 5.10167 5.14201 5.22179 5.24647 5.29619 5.35354 5.47174 5.51106 5.61502 5.65909 5.66777 5.76933 5.85423 5.90595 5.94864 5.95375 6.12577 6.19634 6.23098 6.31201 6.34830 7.16760 7.26831 7.54855 7.62373 8.01124 8.05701 8.60741 9.17453 9.53582 10.05097 10.75567 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031422 B = 0.001778 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.873289 B =15743.012959 C =16291.473916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.050 4.050 3 C -0.246 4.246 4 S 0.183 5.817 5 C -0.212 4.212 6 C -0.150 4.150 7 C 0.578 3.422 8 O -0.528 6.528 9 N -0.716 5.716 10 C 0.142 3.858 11 H 0.102 0.898 12 C -0.170 4.170 13 C 0.078 3.922 14 H 0.046 0.954 15 C -0.140 4.140 16 N -0.660 5.660 17 C 0.052 3.948 18 C 0.440 3.560 19 O -0.582 6.582 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.168 0.832 33 H 0.170 0.830 34 H 0.396 0.604 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.352 0.648 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.009 29.271 -2.435 29.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.061 4.061 3 C -0.381 4.381 4 S 0.451 5.549 5 C -0.350 4.350 6 C -0.169 4.169 7 C 0.364 3.636 8 O -0.405 6.405 9 N -0.367 5.367 10 C 0.038 3.962 11 H 0.120 0.880 12 C -0.229 4.229 13 C -0.033 4.033 14 H 0.064 0.936 15 C -0.198 4.198 16 N -0.296 5.296 17 C -0.081 4.081 18 C 0.226 3.774 19 O -0.466 6.466 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.186 0.814 33 H 0.187 0.813 34 H 0.231 0.769 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.175 0.825 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.726 29.772 -1.764 29.874 hybrid contribution 0.111 -1.665 -0.875 1.884 sum 1.836 28.107 -2.639 28.290 Atomic orbital electron populations 1.20673 0.88540 1.03786 1.03043 1.19893 0.97652 0.89812 0.98704 1.25326 0.96336 1.02712 1.13721 1.83052 1.05748 0.96722 1.69423 1.25655 0.99619 1.02955 1.06779 1.20210 0.92069 0.94434 1.10163 1.17541 0.86400 0.83424 0.76241 1.90767 1.13947 1.86305 1.49518 1.45859 1.09775 1.05698 1.75411 1.21095 0.97933 0.80128 0.97089 0.88028 1.22261 1.02080 1.02523 0.96001 1.21734 0.95416 0.89263 0.96892 0.93638 1.21807 1.02363 0.99786 0.95804 1.60174 1.18152 0.99340 1.51952 1.21724 0.93523 0.91699 1.01170 1.19785 0.87810 0.85274 0.84570 1.90531 1.14200 1.86557 1.55319 1.41851 1.08825 1.04936 1.64382 1.19660 0.94091 0.81501 1.47661 0.87945 1.25261 0.95249 1.00124 0.97308 1.69599 1.03116 1.31076 1.50569 0.85912 0.78306 0.80872 0.79097 1.19913 1.20992 1.19871 0.90911 0.91911 0.88838 0.81418 0.81301 0.76929 0.90709 0.91598 0.92541 0.92263 0.93051 0.91645 0.82542 0.93838 0.89539 0.77481 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 9.54 36.00 0.34 -0.56 16 2 C -0.05 -0.45 6.01 -104.06 -0.63 -1.08 16 3 C -0.25 -1.72 10.91 28.86 0.31 -1.40 16 4 S 0.18 1.06 23.02 -107.50 -2.47 -1.42 16 5 C -0.21 -1.46 10.38 29.93 0.31 -1.15 16 6 C -0.15 -1.43 5.98 -104.63 -0.63 -2.05 16 7 C 0.58 6.61 7.76 -12.62 -0.10 6.51 16 8 O -0.53 -7.70 13.87 5.24 0.07 -7.62 16 9 N -0.72 -6.80 4.35 -54.96 -0.24 -7.04 16 10 C 0.14 1.62 2.29 -67.94 -0.16 1.46 16 11 H 0.10 1.40 7.58 -51.93 -0.39 1.01 16 12 C -0.17 -1.92 9.25 37.15 0.34 -1.58 16 13 C 0.08 0.92 2.28 -67.72 -0.15 0.76 16 14 H 0.05 0.48 7.80 -51.93 -0.41 0.08 16 15 C -0.14 -1.57 9.26 37.16 0.34 -1.23 16 16 N -0.66 -10.44 5.93 -107.99 -0.64 -11.09 16 17 C 0.05 0.89 5.96 -4.98 -0.03 0.86 16 18 C 0.44 10.35 7.82 -10.99 -0.09 10.26 16 19 O -0.58 -15.82 15.78 5.55 0.09 -15.73 16 20 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 21 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 25 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 31 H 0.09 1.03 6.03 -51.93 -0.31 0.72 16 32 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.17 0.74 7.01 -52.49 -0.37 0.38 16 34 H 0.40 2.73 6.89 -40.82 -0.28 2.45 16 35 H 0.07 0.90 6.21 -51.93 -0.32 0.58 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 39 H 0.05 0.46 7.45 -51.93 -0.39 0.07 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.35 5.78 5.87 -39.29 -0.23 5.55 16 42 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 43 H 0.09 1.38 7.44 -51.93 -0.39 1.00 16 44 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 384.67 15.07 5.80 5.80 Total: -1.00 -33.00 384.67 -8.37 -41.37 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -6.26 Total: 14.87 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -0.36 Total: 2.81 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.21 Total: -56.13 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: 0.16 Total: -23.36 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.47 Total: -1.42 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.00 -8.37 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725086302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.599 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds