Wall clock time and date at job start Tue Mar 31 2020 22:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32771 * 123.45807 * 2 1 4 4 S 1.75501 * 110.57374 * 180.23214 * 3 2 1 5 5 C 1.70446 * 92.44902 * 359.73995 * 4 3 2 6 6 C 1.36010 * 110.81403 * 0.02562 * 5 4 3 7 7 C 1.47193 * 123.46002 * 179.97438 * 6 5 4 8 8 O 1.21638 * 119.99813 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00193 * 0.02562 * 7 6 5 10 10 C 1.46497 * 120.00383 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46725 * 324.99787 * 10 9 7 12 12 C 1.52992 * 109.47081 * 84.99495 * 10 9 7 13 13 C 1.52997 * 109.47188 * 204.99951 * 10 9 7 14 14 H 1.09002 * 109.47153 * 299.99573 * 13 10 9 15 15 C 1.53000 * 109.47060 * 59.99892 * 13 10 9 16 16 N 1.46896 * 109.46848 * 179.97438 * 13 10 9 17 17 C 1.46903 * 110.99908 * 154.99970 * 16 13 10 18 18 C 1.50697 * 109.47337 * 179.97438 * 17 16 13 19 19 O 1.21293 * 120.00073 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00129 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99975 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00240 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99729 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00486 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99893 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47132 * 60.00281 * 25 23 21 27 27 H 1.48498 * 109.47370 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47192 * 300.00652 * 25 23 21 29 29 H 1.09002 * 109.46778 * 270.22849 * 1 2 3 30 30 H 1.08997 * 109.47019 * 30.22896 * 1 2 3 31 31 H 1.09004 * 109.47054 * 150.23300 * 1 2 3 32 32 H 1.07995 * 124.71521 * 359.94114 * 3 2 1 33 33 H 1.07997 * 124.59397 * 179.97438 * 5 4 3 34 34 H 0.97004 * 119.99693 * 0.02562 * 9 7 6 35 35 H 1.09001 * 109.47066 * 180.02562 * 12 10 9 36 36 H 1.08996 * 109.47747 * 300.00111 * 12 10 9 37 37 H 1.09002 * 109.47103 * 60.00523 * 12 10 9 38 38 H 1.09004 * 109.46724 * 180.02562 * 15 13 10 39 39 H 1.09001 * 109.47194 * 299.99650 * 15 13 10 40 40 H 1.08992 * 109.47399 * 59.99823 * 15 13 10 41 41 H 1.00895 * 111.00219 * 31.05065 * 16 13 10 42 42 H 1.09003 * 109.46856 * 300.00136 * 17 16 13 43 43 H 1.09001 * 109.47072 * 60.00127 * 17 16 13 44 44 H 0.96999 * 119.99756 * 0.02562 * 20 18 17 45 45 H 0.97000 * 120.00533 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9498 0.7164 -0.0067 5 6 3.6411 -0.9599 -0.0016 6 6 2.3033 -1.2049 0.0042 7 6 1.7262 -2.5590 0.0090 8 8 0.5187 -2.7055 0.0137 9 7 2.5358 -3.6366 0.0083 10 6 1.9615 -4.9843 0.0125 11 1 1.0466 -4.9875 0.6050 12 6 1.6411 -5.4066 -1.4227 13 6 2.9663 -5.9649 0.6205 14 1 3.8812 -5.9617 0.0280 15 6 3.2866 -5.5425 2.0557 16 7 2.3901 -7.3161 0.6253 17 6 3.4452 -8.3383 0.6236 18 6 2.8175 -9.7083 0.6292 19 8 1.6099 -9.8221 0.6336 20 7 3.5979 -10.8072 0.6282 21 6 3.0267 -12.0535 0.6328 22 1 1.9515 -12.1548 0.6367 23 6 3.8313 -13.1864 0.6323 24 7 5.1396 -13.0632 0.6280 25 14 3.0532 -14.8846 0.6392 26 1 2.2059 -15.0458 -0.5697 27 1 4.1197 -15.9178 0.6381 28 1 2.2151 -15.0401 1.8553 29 1 -0.3633 0.0041 1.0277 30 1 -0.3633 0.8879 -0.5174 31 1 -0.3633 -0.8921 -0.5102 32 1 1.8375 2.1102 -0.0009 33 1 4.4044 -1.7239 -0.0037 34 1 3.4987 -3.5197 0.0049 35 1 1.2134 -6.4092 -1.4195 36 1 0.9253 -4.7081 -1.8559 37 1 2.5561 -5.4034 -2.0152 38 1 4.0028 -6.2409 2.4887 39 1 3.7139 -4.5397 2.0526 40 1 2.3717 -5.5456 2.6482 41 1 1.7617 -7.4440 -0.1536 42 1 4.0606 -8.2238 -0.2689 43 1 4.0669 -8.2203 1.5111 44 1 4.5636 -10.7162 0.6242 45 1 5.7012 -13.8540 0.6280 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725086302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:51 Heat of formation + Delta-G solvation = -69.131147 kcal Electronic energy + Delta-G solvation = -26361.656288 eV Core-core repulsion = 22504.501621 eV Total energy + Delta-G solvation = -3857.154666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.26360 -40.21520 -38.88842 -37.82224 -36.05274 -35.40426 -33.29876 -32.76027 -31.23967 -30.74225 -28.58669 -28.00206 -25.92258 -25.65250 -24.15199 -21.90483 -21.56788 -21.09169 -19.97767 -19.82183 -18.67161 -18.16395 -17.66120 -17.27408 -16.87605 -16.41253 -16.15453 -15.89181 -15.53871 -15.36696 -15.01622 -14.80464 -14.52528 -14.45026 -14.12399 -14.07993 -14.03987 -13.60188 -13.49189 -13.46566 -13.12783 -13.01636 -12.89871 -12.79761 -12.67462 -12.60363 -12.43032 -12.33608 -12.12342 -11.81995 -11.63335 -11.50166 -10.86105 -10.34270 -10.22256 -10.01391 -9.84346 -9.36260 -9.23576 -8.46443 -5.94988 -0.20215 0.65104 0.97536 0.98280 1.39802 1.41889 1.52539 2.02259 2.05961 2.30265 2.32797 2.97722 3.20844 3.50107 3.55012 3.75478 3.94671 3.97046 4.15450 4.21915 4.30721 4.39788 4.42463 4.46094 4.55716 4.59556 4.65500 4.70282 4.72432 4.81386 4.84084 4.94550 4.98907 5.01174 5.17932 5.29438 5.37600 5.40083 5.41796 5.58106 5.89493 6.10249 6.36774 6.51905 6.60612 7.12952 7.21966 7.56539 8.12273 8.70562 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031422 B = 0.001778 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.873289 B =15743.012959 C =16291.473916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.079 4.079 3 C -0.248 4.248 4 S 0.241 5.759 5 C -0.205 4.205 6 C -0.182 4.182 7 C 0.575 3.425 8 O -0.571 6.571 9 N -0.702 5.702 10 C 0.151 3.849 11 H 0.071 0.929 12 C -0.165 4.165 13 C 0.084 3.916 14 H 0.073 0.927 15 C -0.137 4.137 16 N -0.679 5.679 17 C 0.067 3.933 18 C 0.436 3.564 19 O -0.625 6.625 20 N -0.572 5.572 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.273 1.273 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.188 0.812 33 H 0.196 0.804 34 H 0.412 0.588 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.346 0.654 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.756 30.824 -2.678 31.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.090 4.090 3 C -0.382 4.382 4 S 0.509 5.491 5 C -0.343 4.343 6 C -0.201 4.201 7 C 0.362 3.638 8 O -0.452 6.452 9 N -0.354 5.354 10 C 0.046 3.954 11 H 0.089 0.911 12 C -0.223 4.223 13 C -0.026 4.026 14 H 0.091 0.909 15 C -0.195 4.195 16 N -0.315 5.315 17 C -0.065 4.065 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.209 5.209 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.559 5.559 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.199 1.199 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.205 0.795 33 H 0.213 0.787 34 H 0.250 0.750 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.168 0.832 42 H 0.090 0.910 43 H 0.124 0.876 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.536 31.353 -2.003 31.743 hybrid contribution -0.695 -2.015 -0.796 2.275 sum 3.841 29.339 -2.799 29.721 Atomic orbital electron populations 1.20574 0.89350 1.03250 1.02515 1.19988 0.97641 0.90651 1.00673 1.25630 0.97441 1.03047 1.12124 1.82921 1.03858 0.94992 1.67321 1.26030 0.99077 1.04826 1.04417 1.20090 0.93265 0.93296 1.13421 1.17942 0.85997 0.84514 0.75349 1.90749 1.15864 1.86973 1.51594 1.45640 1.10462 1.04489 1.74821 1.20814 0.96898 0.81136 0.96577 0.91100 1.22192 1.02530 1.01458 0.96123 1.21759 0.96032 0.86975 0.97797 0.90928 1.21807 1.01460 1.01385 0.94881 1.60161 1.18278 1.00928 1.52165 1.21582 0.93604 0.88001 1.03326 1.20907 0.87350 0.87145 0.82227 1.90502 1.16340 1.87624 1.56646 1.41909 1.09138 1.04840 1.65027 1.19619 0.93366 0.83414 1.50042 0.90440 1.26014 0.95759 1.03140 0.96288 1.69654 1.03805 1.32275 1.50208 0.85008 0.77797 0.76756 0.78892 1.19734 1.19397 1.19882 0.91545 0.90102 0.91607 0.79470 0.78720 0.75019 0.91840 0.92764 0.90733 0.92228 0.90342 0.93807 0.83207 0.91005 0.87622 0.76881 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 9.54 71.24 0.68 -1.15 16 2 C -0.08 -1.39 6.01 -19.46 -0.12 -1.51 16 3 C -0.25 -2.92 10.91 66.64 0.73 -2.19 16 4 S 0.24 1.98 23.02 -56.49 -1.30 0.68 16 5 C -0.20 -2.23 10.38 67.30 0.70 -1.53 16 6 C -0.18 -3.28 5.98 -19.87 -0.12 -3.40 16 7 C 0.57 13.21 7.76 86.60 0.67 13.88 16 8 O -0.57 -17.76 13.87 -4.15 -0.06 -17.82 16 9 N -0.70 -12.51 4.35 -446.04 -1.94 -14.45 16 10 C 0.15 3.40 2.29 44.99 0.10 3.50 16 11 H 0.07 2.07 7.58 -2.39 -0.02 2.05 16 12 C -0.16 -3.70 9.25 71.98 0.67 -3.03 16 13 C 0.08 1.84 2.28 44.92 0.10 1.94 16 14 H 0.07 1.26 7.80 -2.39 -0.02 1.24 16 15 C -0.14 -2.83 9.26 71.98 0.67 -2.17 16 16 N -0.68 -21.05 5.93 -495.58 -2.94 -23.99 16 17 C 0.07 2.21 5.96 85.56 0.51 2.72 16 18 C 0.44 20.65 7.82 87.66 0.69 21.34 16 19 O -0.62 -34.94 15.78 -3.07 -0.05 -34.99 16 20 N -0.57 -29.15 5.29 -306.98 -1.62 -30.77 16 21 C -0.33 -19.05 9.68 84.04 0.81 -18.24 16 22 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 24 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 25 Si 0.99 43.02 29.55 68.60 2.03 45.04 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 28 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.11 8.13 -2.39 -0.02 1.09 16 31 H 0.07 1.60 6.03 -2.39 -0.01 1.58 16 32 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.20 0.90 7.01 -2.91 -0.02 0.88 16 34 H 0.41 4.49 6.89 -92.71 -0.64 3.85 16 35 H 0.06 1.57 6.21 -2.39 -0.01 1.56 16 36 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 1.23 7.45 -2.39 -0.02 1.22 16 39 H 0.08 1.17 7.45 -2.39 -0.02 1.16 16 40 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.35 11.46 5.87 -89.70 -0.53 10.93 16 42 H 0.07 2.00 8.06 -2.39 -0.02 1.98 16 43 H 0.11 3.12 7.44 -2.39 -0.02 3.10 16 44 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 45 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -74.56 384.67 0.11 -74.45 By element: Atomic # 1 Polarization: 41.63 SS G_CDS: -0.85 Total: 40.78 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 6.56 Total: 9.99 kcal Atomic # 7 Polarization: -111.91 SS G_CDS: -6.22 Total: -118.13 kcal Atomic # 8 Polarization: -52.70 SS G_CDS: -0.11 Total: -52.81 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -1.30 Total: 0.68 kcal Total: -74.56 0.11 -74.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725086302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.320 kcal (2) G-P(sol) polarization free energy of solvation -74.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds