Wall clock time and date at job start Tue Mar 31 2020 22:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32767 * 123.45851 * 2 1 4 4 S 1.75507 * 110.57204 * 180.24853 * 3 2 1 5 5 C 1.70450 * 92.44649 * 359.73584 * 4 3 2 6 6 C 1.36009 * 110.81316 * 0.02562 * 5 4 3 7 7 C 1.47196 * 123.45566 * 179.97438 * 6 5 4 8 8 O 1.21633 * 119.99645 * 180.02562 * 7 6 5 9 9 N 1.34773 * 119.99994 * 359.74819 * 7 6 5 10 10 C 1.46506 * 119.99968 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.46738 * 324.99609 * 10 9 7 12 12 C 1.52993 * 109.47171 * 84.99494 * 10 9 7 13 13 C 1.52994 * 109.46945 * 204.99736 * 10 9 7 14 14 H 1.09003 * 109.47412 * 64.99652 * 13 10 9 15 15 C 1.52998 * 109.47438 * 304.99755 * 13 10 9 16 16 N 1.46905 * 109.47131 * 184.99549 * 13 10 9 17 17 C 1.46896 * 111.00061 * 205.00012 * 16 13 10 18 18 C 1.50705 * 109.47012 * 179.97438 * 17 16 13 19 19 O 1.21293 * 119.99876 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00017 * 179.97438 * 18 17 16 21 21 C 1.37093 * 119.99900 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00163 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00027 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00094 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00164 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47006 * 89.99738 * 25 23 21 27 27 H 1.48495 * 109.47371 * 210.00454 * 25 23 21 28 28 H 1.48506 * 109.46915 * 330.00207 * 25 23 21 29 29 H 1.09001 * 109.47074 * 270.21405 * 1 2 3 30 30 H 1.09004 * 109.46998 * 30.21194 * 1 2 3 31 31 H 1.08996 * 109.47381 * 150.21508 * 1 2 3 32 32 H 1.07997 * 124.71581 * 359.95531 * 3 2 1 33 33 H 1.07990 * 124.58883 * 179.97438 * 5 4 3 34 34 H 0.97004 * 120.00018 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.47547 * 300.00481 * 12 10 9 36 36 H 1.09000 * 109.47196 * 60.00395 * 12 10 9 37 37 H 1.09002 * 109.46922 * 180.02562 * 12 10 9 38 38 H 1.09003 * 109.46735 * 300.00312 * 15 13 10 39 39 H 1.09000 * 109.46741 * 60.00056 * 15 13 10 40 40 H 1.08995 * 109.47283 * 180.02562 * 15 13 10 41 41 H 1.00901 * 110.99768 * 328.95580 * 16 13 10 42 42 H 1.08995 * 109.47477 * 299.99931 * 17 16 13 43 43 H 1.09001 * 109.47578 * 60.00226 * 17 16 13 44 44 H 0.96997 * 119.99679 * 0.02562 * 20 18 17 45 45 H 0.96994 * 120.00030 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9499 0.7163 -0.0071 5 6 3.6410 -0.9600 -0.0022 6 6 2.3032 -1.2049 0.0040 7 6 1.7261 -2.5590 0.0088 8 8 0.5187 -2.7055 0.0138 9 7 2.5356 -3.6365 0.0021 10 6 1.9613 -4.9843 0.0064 11 1 1.0492 -4.9886 0.6032 12 6 1.6341 -5.4038 -1.4281 13 6 2.9688 -5.9661 0.6076 14 1 3.1346 -5.7200 1.6565 15 6 4.2922 -5.8694 -0.1541 16 7 2.4424 -7.3336 0.5030 17 6 3.0264 -8.2028 1.5331 18 6 2.4633 -9.5939 1.3948 19 8 1.6554 -9.8373 0.5234 20 7 2.8583 -10.5677 2.2387 21 6 2.3465 -11.8333 2.1125 22 1 1.6271 -12.0500 1.3366 23 6 2.7532 -12.8372 2.9828 24 7 2.2622 -14.0502 2.8622 25 14 3.9980 -12.4626 4.3243 26 1 3.2860 -12.0284 5.5530 27 1 4.7922 -13.6826 4.6173 28 1 4.9054 -11.3788 3.8689 29 1 -0.3633 0.0038 1.0277 30 1 -0.3633 0.8881 -0.5171 31 1 -0.3634 -0.8919 -0.5105 32 1 1.8375 2.1102 -0.0007 33 1 4.4043 -1.7240 -0.0045 34 1 3.4986 -3.5197 -0.0063 35 1 0.9163 -4.7043 -1.8566 36 1 2.5462 -5.3995 -2.0249 37 1 1.2063 -6.4064 -1.4249 38 1 4.1264 -6.1156 -1.2029 39 1 4.6828 -4.8548 -0.0763 40 1 5.0098 -6.5692 0.2740 41 1 1.4347 -7.3380 0.5548 42 1 4.1089 -8.2349 1.4105 43 1 2.7840 -7.8097 2.5204 44 1 3.5046 -10.3731 2.9352 45 1 2.5465 -14.7510 3.4695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725086305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:55 Heat of formation + Delta-G solvation = -36.027297 kcal Electronic energy + Delta-G solvation = -26426.057877 eV Core-core repulsion = 22570.338702 eV Total energy + Delta-G solvation = -3855.719175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.47754 -38.76347 -37.95917 -36.99141 -34.61948 -33.88213 -32.09359 -31.64824 -30.48966 -29.22524 -27.94947 -26.77370 -25.13290 -24.36930 -23.32760 -21.27561 -19.98571 -19.49524 -19.17298 -18.41381 -18.10293 -17.36386 -16.33567 -15.93217 -15.64338 -15.31919 -15.20439 -14.78748 -14.49072 -14.01380 -13.95950 -13.82321 -13.57980 -13.51744 -13.16997 -12.98094 -12.86104 -12.61852 -12.40894 -12.37768 -12.20842 -12.16559 -12.08263 -11.90700 -11.58132 -11.29928 -11.22420 -11.00893 -10.77050 -10.60678 -10.01914 -9.98026 -9.58150 -9.39988 -9.28250 -8.74670 -8.60766 -8.24894 -8.17737 -6.31650 -3.83136 0.33274 1.11100 1.48281 1.61561 2.84262 3.01428 3.05672 3.07110 3.14148 3.72855 4.06518 4.10329 4.20626 4.45622 4.63599 4.72524 4.75764 4.85852 4.92856 5.06796 5.19644 5.20502 5.26676 5.35386 5.46908 5.47663 5.48269 5.61003 5.62112 5.72325 5.78285 5.82530 5.86053 5.89249 5.92542 6.11111 6.21429 6.32602 6.39229 7.01596 7.23642 7.49217 7.57365 7.97613 8.13779 8.58862 8.94320 9.41606 9.81588 10.81447 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024032 B = 0.001890 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.850755 B =14808.848684 C =15264.806967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.050 4.050 3 C -0.246 4.246 4 S 0.184 5.816 5 C -0.212 4.212 6 C -0.150 4.150 7 C 0.577 3.423 8 O -0.529 6.529 9 N -0.718 5.718 10 C 0.143 3.857 11 H 0.089 0.911 12 C -0.158 4.158 13 C 0.076 3.924 14 H 0.048 0.952 15 C -0.144 4.144 16 N -0.656 5.656 17 C 0.048 3.952 18 C 0.450 3.550 19 O -0.563 6.563 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.169 0.831 33 H 0.169 0.831 34 H 0.397 0.603 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.061 0.939 41 H 0.353 0.647 42 H 0.088 0.912 43 H 0.045 0.955 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.686 32.335 -3.599 33.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.061 4.061 3 C -0.380 4.380 4 S 0.451 5.549 5 C -0.351 4.351 6 C -0.169 4.169 7 C 0.363 3.637 8 O -0.406 6.406 9 N -0.371 5.371 10 C 0.038 3.962 11 H 0.107 0.893 12 C -0.216 4.216 13 C -0.035 4.035 14 H 0.066 0.934 15 C -0.202 4.202 16 N -0.290 5.290 17 C -0.085 4.085 18 C 0.236 3.764 19 O -0.445 6.445 20 N -0.230 5.230 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.707 3.293 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.186 0.814 33 H 0.186 0.814 34 H 0.233 0.767 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.174 0.826 42 H 0.106 0.894 43 H 0.063 0.937 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.038 32.504 -4.601 33.574 hybrid contribution 0.009 -0.477 2.033 2.088 sum 7.047 32.026 -2.568 32.893 Atomic orbital electron populations 1.20674 0.88523 1.03826 1.03022 1.19893 0.97664 0.89803 0.98716 1.25331 0.96324 1.02725 1.13668 1.83050 1.05756 0.96666 1.69399 1.25648 0.99604 1.02976 1.06839 1.20212 0.92080 0.94445 1.10161 1.17574 0.86423 0.83504 0.76246 1.90763 1.13974 1.86343 1.49570 1.46033 1.09962 1.05683 1.75455 1.21094 0.96527 0.80001 0.98556 0.89290 1.22129 1.01882 1.02673 0.94895 1.21723 0.95028 0.88714 0.98001 0.93450 1.21888 0.96139 1.00067 1.02126 1.60177 1.12822 1.06199 1.49804 1.21771 1.00444 0.93148 0.93134 1.19674 0.86228 0.85795 0.84747 1.90573 1.36138 1.82395 1.35376 1.42201 1.40569 1.10136 1.30094 1.19432 1.23915 0.83071 1.16919 0.86252 1.25047 0.97991 0.95141 0.98038 1.69622 1.43181 1.01266 1.38019 0.86667 0.81538 0.78603 0.82541 1.19672 1.20170 1.19513 0.90942 0.91870 0.88826 0.81386 0.81360 0.76681 0.92702 0.92173 0.89878 0.90979 0.93425 0.92023 0.82577 0.89421 0.93681 0.79723 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 9.54 36.01 0.34 -0.55 16 2 C -0.05 -0.45 6.01 -104.06 -0.63 -1.07 16 3 C -0.25 -1.67 10.91 28.86 0.31 -1.36 16 4 S 0.18 1.03 23.02 -107.50 -2.48 -1.45 16 5 C -0.21 -1.43 10.38 29.93 0.31 -1.12 16 6 C -0.15 -1.41 5.98 -104.63 -0.63 -2.03 16 7 C 0.58 6.51 7.76 -12.62 -0.10 6.41 16 8 O -0.53 -7.61 13.87 5.25 0.07 -7.54 16 9 N -0.72 -6.69 4.96 -54.96 -0.27 -6.96 16 10 C 0.14 1.55 2.30 -67.93 -0.16 1.40 16 11 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 12 C -0.16 -1.81 9.02 37.15 0.33 -1.48 16 13 C 0.08 0.83 2.66 -67.71 -0.18 0.65 16 14 H 0.05 0.50 7.80 -51.93 -0.40 0.09 16 15 C -0.14 -1.34 8.93 37.16 0.33 -1.01 16 16 N -0.66 -9.53 5.14 -107.99 -0.55 -10.08 16 17 C 0.05 0.76 5.97 -4.98 -0.03 0.73 16 18 C 0.45 10.05 7.82 -10.98 -0.09 9.96 16 19 O -0.56 -14.93 15.78 5.55 0.09 -14.84 16 20 N -0.59 -13.94 5.09 -10.96 -0.06 -14.00 16 21 C -0.30 -8.60 10.16 -14.94 -0.15 -8.75 16 22 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.72 13.96 55.50 0.77 -24.95 16 25 Si 0.88 19.28 27.74 -169.99 -4.71 14.56 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 31 H 0.09 1.02 6.03 -51.93 -0.31 0.71 16 32 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.17 0.72 7.01 -52.49 -0.37 0.35 16 34 H 0.40 2.71 5.07 -40.82 -0.21 2.51 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.64 6.56 -51.93 -0.34 0.30 16 37 H 0.08 1.07 7.17 -51.93 -0.37 0.70 16 38 H 0.07 0.74 6.56 -51.93 -0.34 0.39 16 39 H 0.05 0.31 6.29 -51.93 -0.33 -0.01 16 40 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 41 H 0.35 5.47 7.61 -39.29 -0.30 5.17 16 42 H 0.09 1.25 7.43 -51.93 -0.39 0.86 16 43 H 0.05 0.63 8.06 -51.93 -0.42 0.21 16 44 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 377.78 15.07 5.69 5.69 Total: -1.00 -34.04 377.78 -7.90 -41.93 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -6.04 Total: 14.83 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -0.41 Total: 2.80 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.11 Total: -55.99 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.16 Total: -22.38 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.56 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.48 Total: -1.45 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.04 -7.90 -41.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725086305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.907 kcal (2) G-P(sol) polarization free energy of solvation -34.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds