Wall clock time and date at job start Tue Mar 31 2020 22:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32767 * 123.45851 * 2 1 4 4 S 1.75507 * 110.57204 * 180.24853 * 3 2 1 5 5 C 1.70450 * 92.44649 * 359.73584 * 4 3 2 6 6 C 1.36009 * 110.81316 * 0.02562 * 5 4 3 7 7 C 1.47196 * 123.45566 * 179.97438 * 6 5 4 8 8 O 1.21633 * 119.99645 * 180.02562 * 7 6 5 9 9 N 1.34773 * 119.99994 * 359.74819 * 7 6 5 10 10 C 1.46506 * 119.99968 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.46738 * 324.99609 * 10 9 7 12 12 C 1.52993 * 109.47171 * 84.99494 * 10 9 7 13 13 C 1.52994 * 109.46945 * 204.99736 * 10 9 7 14 14 H 1.09003 * 109.47412 * 64.99652 * 13 10 9 15 15 C 1.52998 * 109.47438 * 304.99755 * 13 10 9 16 16 N 1.46905 * 109.47131 * 184.99549 * 13 10 9 17 17 C 1.46896 * 111.00061 * 205.00012 * 16 13 10 18 18 C 1.50705 * 109.47012 * 179.97438 * 17 16 13 19 19 O 1.21293 * 119.99876 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00017 * 179.97438 * 18 17 16 21 21 C 1.37093 * 119.99900 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00163 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00027 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00094 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00164 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47006 * 89.99738 * 25 23 21 27 27 H 1.48495 * 109.47371 * 210.00454 * 25 23 21 28 28 H 1.48506 * 109.46915 * 330.00207 * 25 23 21 29 29 H 1.09001 * 109.47074 * 270.21405 * 1 2 3 30 30 H 1.09004 * 109.46998 * 30.21194 * 1 2 3 31 31 H 1.08996 * 109.47381 * 150.21508 * 1 2 3 32 32 H 1.07997 * 124.71581 * 359.95531 * 3 2 1 33 33 H 1.07990 * 124.58883 * 179.97438 * 5 4 3 34 34 H 0.97004 * 120.00018 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.47547 * 300.00481 * 12 10 9 36 36 H 1.09000 * 109.47196 * 60.00395 * 12 10 9 37 37 H 1.09002 * 109.46922 * 180.02562 * 12 10 9 38 38 H 1.09003 * 109.46735 * 300.00312 * 15 13 10 39 39 H 1.09000 * 109.46741 * 60.00056 * 15 13 10 40 40 H 1.08995 * 109.47283 * 180.02562 * 15 13 10 41 41 H 1.00901 * 110.99768 * 328.95580 * 16 13 10 42 42 H 1.08995 * 109.47477 * 299.99931 * 17 16 13 43 43 H 1.09001 * 109.47578 * 60.00226 * 17 16 13 44 44 H 0.96997 * 119.99679 * 0.02562 * 20 18 17 45 45 H 0.96994 * 120.00030 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9499 0.7163 -0.0071 5 6 3.6410 -0.9600 -0.0022 6 6 2.3032 -1.2049 0.0040 7 6 1.7261 -2.5590 0.0088 8 8 0.5187 -2.7055 0.0138 9 7 2.5356 -3.6365 0.0021 10 6 1.9613 -4.9843 0.0064 11 1 1.0492 -4.9886 0.6032 12 6 1.6341 -5.4038 -1.4281 13 6 2.9688 -5.9661 0.6076 14 1 3.1346 -5.7200 1.6565 15 6 4.2922 -5.8694 -0.1541 16 7 2.4424 -7.3336 0.5030 17 6 3.0264 -8.2028 1.5331 18 6 2.4633 -9.5939 1.3948 19 8 1.6554 -9.8373 0.5234 20 7 2.8583 -10.5677 2.2387 21 6 2.3465 -11.8333 2.1125 22 1 1.6271 -12.0500 1.3366 23 6 2.7532 -12.8372 2.9828 24 7 2.2622 -14.0502 2.8622 25 14 3.9980 -12.4626 4.3243 26 1 3.2860 -12.0284 5.5530 27 1 4.7922 -13.6826 4.6173 28 1 4.9054 -11.3788 3.8689 29 1 -0.3633 0.0038 1.0277 30 1 -0.3633 0.8881 -0.5171 31 1 -0.3634 -0.8919 -0.5105 32 1 1.8375 2.1102 -0.0007 33 1 4.4043 -1.7240 -0.0045 34 1 3.4986 -3.5197 -0.0063 35 1 0.9163 -4.7043 -1.8566 36 1 2.5462 -5.3995 -2.0249 37 1 1.2063 -6.4064 -1.4249 38 1 4.1264 -6.1156 -1.2029 39 1 4.6828 -4.8548 -0.0763 40 1 5.0098 -6.5692 0.2740 41 1 1.4347 -7.3380 0.5548 42 1 4.1089 -8.2349 1.4105 43 1 2.7840 -7.8097 2.5204 44 1 3.5046 -10.3731 2.9352 45 1 2.5465 -14.7510 3.4695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725086305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:55 Heat of formation + Delta-G solvation = -62.477107 kcal Electronic energy + Delta-G solvation = -26427.204827 eV Core-core repulsion = 22570.338702 eV Total energy + Delta-G solvation = -3856.866125 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.29097 -40.33934 -38.95376 -37.84709 -36.09864 -35.42713 -33.75306 -32.88252 -31.32323 -30.09112 -28.57548 -28.25223 -26.09618 -25.65382 -24.40491 -22.03224 -21.30502 -20.84702 -20.37194 -19.88370 -18.66951 -18.12698 -17.65169 -17.24666 -16.76233 -16.66333 -16.24184 -16.01281 -15.55041 -15.30088 -15.05249 -14.79538 -14.58139 -14.45705 -14.32913 -14.10537 -14.00609 -13.64717 -13.56016 -13.47113 -13.11477 -13.07851 -13.01129 -12.86452 -12.79988 -12.53384 -12.41183 -11.97580 -11.93639 -11.82389 -11.67953 -11.51008 -10.86714 -10.44220 -10.24723 -10.21104 -9.85036 -9.38333 -9.24321 -8.40931 -6.01979 -0.21245 0.64401 0.96661 0.97348 1.30215 1.35964 1.44973 1.96124 2.03532 2.23442 2.31216 2.77511 3.15456 3.38811 3.59860 3.74570 3.91489 3.97456 4.13574 4.20245 4.21520 4.39248 4.42355 4.45966 4.55250 4.63891 4.64943 4.71484 4.78257 4.81696 4.82284 4.97824 5.00616 5.03578 5.27019 5.28826 5.44424 5.50085 5.53527 5.57904 5.90075 6.03162 6.30594 6.50774 6.59888 6.88502 7.20519 7.40028 7.96969 8.76744 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024032 B = 0.001890 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.850755 B =14808.848684 C =15264.806967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.079 4.079 3 C -0.248 4.248 4 S 0.243 5.757 5 C -0.205 4.205 6 C -0.183 4.183 7 C 0.573 3.427 8 O -0.572 6.572 9 N -0.704 5.704 10 C 0.150 3.850 11 H 0.067 0.933 12 C -0.150 4.150 13 C 0.083 3.917 14 H 0.064 0.936 15 C -0.144 4.144 16 N -0.672 5.672 17 C 0.063 3.937 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.054 0.946 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.966 3.034 26 H -0.258 1.258 27 H -0.276 1.276 28 H -0.229 1.229 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.188 0.812 33 H 0.196 0.804 34 H 0.412 0.588 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.343 0.657 42 H 0.118 0.882 43 H 0.077 0.923 44 H 0.390 0.610 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.963 35.779 -1.850 37.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.090 4.090 3 C -0.382 4.382 4 S 0.511 5.489 5 C -0.344 4.344 6 C -0.202 4.202 7 C 0.360 3.640 8 O -0.453 6.453 9 N -0.358 5.358 10 C 0.045 3.955 11 H 0.085 0.915 12 C -0.208 4.208 13 C -0.027 4.027 14 H 0.082 0.918 15 C -0.201 4.201 16 N -0.306 5.306 17 C -0.070 4.070 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.233 5.233 21 C -0.458 4.458 22 H 0.072 0.928 23 C -0.216 4.216 24 N -0.576 5.576 25 Si 0.786 3.214 26 H -0.183 1.183 27 H -0.201 1.201 28 H -0.152 1.152 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.205 0.795 33 H 0.213 0.787 34 H 0.251 0.749 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.163 0.837 42 H 0.136 0.864 43 H 0.094 0.906 44 H 0.226 0.774 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.365 35.991 -2.860 37.851 hybrid contribution -1.369 -1.468 1.358 2.423 sum 9.996 34.522 -1.502 35.972 Atomic orbital electron populations 1.20575 0.89364 1.03243 1.02517 1.19987 0.97638 0.90662 1.00701 1.25636 0.97475 1.03050 1.12081 1.82916 1.03806 0.94919 1.67260 1.26029 0.99055 1.04868 1.04446 1.20099 0.93297 0.93326 1.13456 1.17983 0.86037 0.84617 0.75370 1.90746 1.15873 1.87011 1.51639 1.45820 1.10555 1.04548 1.74837 1.20856 0.96109 0.81008 0.97528 0.91461 1.22031 1.01908 1.01152 0.95754 1.21760 0.95370 0.86358 0.99204 0.91821 1.21914 0.94941 1.02236 1.01054 1.60214 1.12327 1.08294 1.49766 1.21693 1.01486 0.88688 0.95095 1.20991 0.84609 0.87928 0.82863 1.90555 1.38182 1.83783 1.37262 1.42019 1.41263 1.08723 1.31261 1.19000 1.24278 0.85979 1.16507 0.92772 1.26153 1.00358 0.94187 1.00892 1.69811 1.45186 1.02869 1.39698 0.85345 0.78362 0.79657 0.78021 1.18254 1.20071 1.15215 0.91514 0.90120 0.91635 0.79465 0.78728 0.74918 0.94025 0.90989 0.91757 0.92088 0.90119 0.91793 0.83714 0.86433 0.90563 0.77446 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.79 9.54 71.24 0.68 -1.11 16 2 C -0.08 -1.36 6.01 -19.46 -0.12 -1.48 16 3 C -0.25 -2.79 10.91 66.64 0.73 -2.06 16 4 S 0.24 1.83 23.02 -56.49 -1.30 0.53 16 5 C -0.21 -2.10 10.38 67.30 0.70 -1.40 16 6 C -0.18 -3.20 5.98 -19.87 -0.12 -3.32 16 7 C 0.57 12.82 7.76 86.60 0.67 13.49 16 8 O -0.57 -17.39 13.87 -4.13 -0.06 -17.44 16 9 N -0.70 -12.01 4.96 -446.03 -2.21 -14.22 16 10 C 0.15 3.18 2.30 44.99 0.10 3.28 16 11 H 0.07 1.75 7.58 -2.39 -0.02 1.73 16 12 C -0.15 -3.53 9.02 71.98 0.65 -2.88 16 13 C 0.08 1.60 2.66 44.91 0.12 1.72 16 14 H 0.06 1.08 7.80 -2.39 -0.02 1.06 16 15 C -0.14 -2.15 8.93 71.98 0.64 -1.51 16 16 N -0.67 -18.72 5.14 -495.58 -2.55 -21.27 16 17 C 0.06 1.82 5.97 85.56 0.51 2.33 16 18 C 0.45 19.98 7.82 87.66 0.69 20.66 16 19 O -0.61 -33.96 15.78 -3.07 -0.05 -34.01 16 20 N -0.59 -27.62 5.09 -306.98 -1.56 -29.18 16 21 C -0.33 -19.28 10.16 84.04 0.85 -18.42 16 22 H 0.05 3.80 7.39 -2.91 -0.02 3.78 16 23 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 24 N -0.93 -56.61 13.96 21.66 0.30 -56.31 16 25 Si 0.97 38.52 27.74 68.60 1.90 40.42 16 26 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 27 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 28 H -0.23 -7.57 6.52 99.48 0.65 -6.92 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 1.08 8.13 -2.38 -0.02 1.06 16 31 H 0.06 1.57 6.03 -2.39 -0.01 1.55 16 32 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.20 0.75 7.01 -2.92 -0.02 0.73 16 34 H 0.41 4.25 5.07 -92.71 -0.47 3.78 16 35 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.49 6.56 -2.39 -0.02 1.47 16 37 H 0.06 1.75 7.17 -2.39 -0.02 1.73 16 38 H 0.06 1.08 6.56 -2.39 -0.02 1.06 16 39 H 0.08 0.66 6.29 -2.39 -0.02 0.65 16 40 H 0.06 0.97 7.45 -2.39 -0.02 0.95 16 41 H 0.34 10.78 7.61 -89.69 -0.68 10.10 16 42 H 0.12 2.80 7.43 -2.39 -0.02 2.78 16 43 H 0.08 1.81 8.06 -2.39 -0.02 1.79 16 44 H 0.39 14.93 5.76 -92.71 -0.53 14.40 16 45 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -82.55 377.78 0.36 -82.18 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: -0.69 Total: 40.51 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 6.57 Total: 8.79 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -6.02 Total: -120.98 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -0.11 Total: -51.45 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.42 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.30 Total: 0.53 kcal Total: -82.55 0.36 -82.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725086305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.705 kcal (2) G-P(sol) polarization free energy of solvation -82.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds