Wall clock time and date at job start Tue Mar 31 2020 22:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29025 * 124.91907 * 2 1 4 4 C 1.31778 * 117.13171 * 180.02562 * 3 2 1 5 5 C 1.50696 * 122.75711 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47139 * 90.01711 * 5 4 3 7 7 O 1.21273 * 120.00259 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99654 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99714 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47004 * 180.02562 * 9 8 6 11 11 O 1.42904 * 110.64058 * 298.31066 * 10 9 8 12 12 C 1.55156 * 110.72286 * 174.97843 * 10 9 8 13 13 C 1.54903 * 101.58351 * 206.13369 * 12 10 9 14 14 N 1.47421 * 104.83315 * 37.00756 * 13 12 10 15 15 C 1.36939 * 125.64858 * 155.85141 * 14 13 12 16 16 H 1.07996 * 119.99982 * 353.90110 * 15 14 13 17 17 C 1.38817 * 119.99954 * 173.89711 * 15 14 13 18 18 N 1.31613 * 119.99986 * 6.83731 * 17 15 14 19 19 Si 1.86797 * 119.99814 * 186.83100 * 17 15 14 20 20 H 1.48505 * 109.47109 * 94.99070 * 19 17 15 21 21 H 1.48503 * 109.46980 * 214.98572 * 19 17 15 22 22 H 1.48496 * 109.47373 * 334.98809 * 19 17 15 23 23 C 1.47020 * 108.70220 * 335.86868 * 14 13 12 24 24 C 1.33645 * 114.49423 * 0.22986 * 4 3 2 25 25 C 1.50703 * 126.03424 * 179.76772 * 24 4 3 26 26 S 1.70982 * 124.91636 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47123 * 90.00069 * 1 2 3 28 28 H 1.08996 * 109.47198 * 209.99817 * 1 2 3 29 29 H 1.09002 * 109.47130 * 329.99884 * 1 2 3 30 30 H 1.09006 * 109.46752 * 330.02619 * 5 4 3 31 31 H 1.08995 * 109.47237 * 210.02470 * 5 4 3 32 32 H 0.97002 * 120.00465 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.47159 * 60.00196 * 9 8 6 34 34 H 1.08995 * 109.47361 * 300.00333 * 9 8 6 35 35 H 0.96699 * 113.99785 * 61.68887 * 11 10 9 36 36 H 1.09001 * 111.00881 * 88.05545 * 12 10 9 37 37 H 1.09003 * 111.00263 * 324.20864 * 12 10 9 38 38 H 1.09002 * 110.36741 * 278.16597 * 13 12 10 39 39 H 1.09003 * 110.36584 * 155.84338 * 13 12 10 40 40 H 0.97001 * 120.00020 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.87818 * 120.47590 * 23 14 13 42 42 H 1.08994 * 109.88526 * 241.48611 * 23 14 13 43 43 H 1.09002 * 109.46861 * 90.00069 * 25 24 4 44 44 H 1.09000 * 109.47110 * 210.00586 * 25 24 4 45 45 H 1.08998 * 109.47014 * 330.00367 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 4.5307 2.0245 -0.0012 6 6 4.8582 2.4063 1.4194 7 8 4.3469 1.8071 2.3416 8 7 5.7201 3.4129 1.6651 9 6 6.0389 3.7836 3.0461 10 6 7.0334 4.9463 3.0454 11 8 8.2549 4.5640 2.4099 12 6 7.2951 5.4457 4.4909 13 6 7.7014 6.9197 4.2420 14 7 6.8440 7.3645 3.1283 15 6 6.4960 8.6609 2.8575 16 1 6.7746 9.4489 3.5415 17 6 5.7850 8.9623 1.7040 18 7 5.3290 7.9927 0.9398 19 14 5.4756 10.7442 1.2364 20 1 6.5223 11.1951 0.2843 21 1 4.1406 10.8634 0.5970 22 1 5.5178 11.5905 2.4558 23 6 6.4241 6.1856 2.3566 24 6 3.9354 -0.4006 -0.0059 25 6 5.3575 -0.8994 -0.0127 26 16 2.4856 -1.4020 -0.0006 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 4.0902 2.8792 -0.5146 31 1 5.4428 1.7222 -0.5157 32 1 6.1294 3.8919 0.9275 33 1 6.4793 2.9287 3.5594 34 1 5.1271 4.0862 3.5608 35 1 8.1540 4.3163 1.4806 36 1 8.1093 4.8892 4.9552 37 1 6.3895 5.3866 5.0947 38 1 8.7524 6.9810 3.9596 39 1 7.5108 7.5210 5.1309 40 1 4.8319 8.2033 0.1339 41 1 5.3366 6.1116 2.3551 42 1 6.7917 6.2621 1.3334 43 1 5.7041 -1.0228 1.0134 44 1 5.4039 -1.8578 -0.5297 45 1 5.9929 -0.1782 -0.5266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733485735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:51 Heat of formation + Delta-G solvation = -21.004312 kcal Electronic energy + Delta-G solvation = -27363.235941 eV Core-core repulsion = 23508.168211 eV Total energy + Delta-G solvation = -3855.067730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.43946 -39.34855 -38.21023 -35.07300 -34.02113 -33.92439 -32.23892 -30.75364 -30.25874 -29.19098 -27.82469 -25.87084 -25.15584 -23.71713 -22.84150 -20.83045 -20.02207 -19.82275 -18.94898 -18.16473 -17.47258 -16.77369 -16.37579 -15.75620 -15.30314 -15.04140 -14.82332 -14.48046 -14.09699 -13.95851 -13.71327 -13.65882 -13.53968 -13.34935 -13.18232 -12.94244 -12.83560 -12.41945 -12.33180 -12.24692 -12.16810 -11.73213 -11.60327 -11.25966 -11.20445 -10.85409 -10.66330 -10.47288 -10.26778 -10.04634 -9.81477 -9.72127 -9.68128 -9.30576 -9.28675 -8.85748 -8.66631 -8.65679 -6.87462 -5.78299 -3.09250 0.60199 1.20915 1.59141 2.61112 2.80605 3.38188 3.43594 3.43857 3.45502 3.96443 4.45445 4.57117 4.63912 4.82990 4.85180 4.91107 5.04964 5.10689 5.14817 5.24183 5.31888 5.33636 5.46380 5.47194 5.49403 5.60298 5.62666 5.69340 5.78391 5.91480 5.99637 6.09759 6.17301 6.29651 6.43400 6.57630 6.64727 6.89829 7.29003 7.42427 7.63379 7.70145 7.70828 8.06709 8.18623 8.37983 9.16125 9.77081 10.43236 11.34630 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.002706 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.287738 B =10343.068710 C =11575.341366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.046 3.954 3 N -0.457 5.457 4 C 0.089 3.911 5 C -0.070 4.070 6 C 0.521 3.479 7 O -0.538 6.538 8 N -0.721 5.721 9 C 0.112 3.888 10 C 0.086 3.914 11 O -0.551 6.551 12 C -0.115 4.115 13 C 0.136 3.864 14 N -0.604 5.604 15 C -0.227 4.227 16 H 0.079 0.921 17 C -0.008 4.008 18 N -0.923 5.923 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.163 3.837 24 C -0.211 4.211 25 C -0.075 4.075 26 S 0.105 5.895 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.402 0.598 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.367 0.633 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.025 0.975 39 H 0.041 0.959 40 H 0.252 0.748 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.773 -20.154 -4.108 20.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.232 4.232 3 N -0.171 5.171 4 C -0.043 4.043 5 C -0.113 4.113 6 C 0.307 3.693 7 O -0.415 6.415 8 N -0.373 5.373 9 C -0.013 4.013 10 C 0.045 3.955 11 O -0.356 6.356 12 C -0.154 4.154 13 C 0.010 3.990 14 N -0.331 5.331 15 C -0.355 4.355 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.571 5.571 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.037 3.963 24 C -0.332 4.332 25 C -0.134 4.134 26 S 0.360 5.640 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.237 0.763 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.214 0.786 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.043 0.957 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.522 -20.886 -2.980 21.389 hybrid contribution 0.246 1.841 -1.219 2.221 sum -3.276 -19.045 -4.199 19.776 Atomic orbital electron populations 1.20426 0.85233 1.04244 1.03722 1.26820 1.01553 0.90636 1.04194 1.65999 1.04405 1.31635 1.15079 1.19292 0.89735 0.92747 1.02534 1.20204 0.98069 0.97205 0.95820 1.20238 0.78553 0.79803 0.90754 1.90694 1.51433 1.53145 1.46182 1.45873 1.46561 1.35519 1.09369 1.21928 0.99121 0.97472 0.82730 1.22908 0.83519 0.93511 0.95609 1.86509 1.31943 1.89171 1.27937 1.22705 1.01582 0.97797 0.93278 1.21556 0.94300 0.91557 0.91560 1.44374 1.55924 1.02837 1.29917 1.19095 1.29903 0.82549 1.03937 0.90285 1.24798 1.00520 0.97741 0.97358 1.69913 1.41307 1.29598 1.16261 0.86095 0.77203 0.84159 0.78312 1.21631 1.21771 1.20636 1.21790 0.97862 0.82528 0.94097 1.25561 1.00219 0.95531 1.11850 1.20263 0.88626 1.01357 1.03187 1.83739 0.97760 1.12826 1.69694 0.89682 0.90246 0.89169 0.86710 0.87271 0.76293 0.91392 0.90657 0.78586 0.90938 0.90261 0.95688 0.94108 0.93763 0.92966 0.93231 0.90295 0.91138 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.46 36.00 0.38 -0.25 16 2 C 0.05 0.56 7.39 -13.46 -0.10 0.46 16 3 N -0.46 -6.83 10.53 -8.06 -0.08 -6.92 16 4 C 0.09 1.22 5.23 -84.23 -0.44 0.78 16 5 C -0.07 -0.87 5.88 -29.04 -0.17 -1.04 16 6 C 0.52 8.03 7.82 -10.98 -0.09 7.95 16 7 O -0.54 -10.33 16.03 5.56 0.09 -10.24 16 8 N -0.72 -10.52 5.17 -60.29 -0.31 -10.83 16 9 C 0.11 1.82 4.73 -4.04 -0.02 1.80 16 10 C 0.09 1.54 0.92 -88.79 -0.08 1.45 16 11 O -0.55 -9.26 13.10 -35.23 -0.46 -9.72 16 12 C -0.11 -2.03 6.26 -24.59 -0.15 -2.18 16 13 C 0.14 2.85 7.23 -2.53 -0.02 2.83 16 14 N -0.60 -15.24 3.39 -170.08 -0.58 -15.82 16 15 C -0.23 -6.27 10.26 -15.06 -0.15 -6.42 16 16 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 17 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 18 N -0.92 -26.17 10.36 55.49 0.57 -25.60 16 19 Si 0.91 21.93 29.56 -169.99 -5.02 16.91 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.16 3.70 4.16 -3.07 -0.01 3.69 16 24 C -0.21 -2.49 6.59 -35.92 -0.24 -2.72 16 25 C -0.08 -0.66 10.10 36.01 0.36 -0.29 16 26 S 0.10 1.09 23.18 -107.50 -2.49 -1.41 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.11 0.95 6.71 -51.93 -0.35 0.60 16 32 H 0.40 5.20 7.38 -40.82 -0.30 4.90 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.36 8.13 -51.93 -0.42 0.94 16 35 H 0.37 4.92 8.12 45.56 0.37 5.29 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.08 1.33 8.04 -51.93 -0.42 0.92 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.05 1.34 7.23 -51.93 -0.38 0.96 16 42 H 0.05 1.22 7.28 -51.93 -0.38 0.85 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.58 6.76 -51.93 -0.35 0.23 16 LS Contribution 382.38 15.07 5.76 5.76 Total: -1.00 -35.37 382.38 -9.35 -44.72 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.00 Total: 7.40 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -0.83 Total: 5.74 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.40 Total: -59.16 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.37 Total: -19.96 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.49 Total: -1.41 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.37 -9.35 -44.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733485735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.715 kcal (2) G-P(sol) polarization free energy of solvation -35.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds