Wall clock time and date at job start Tue Mar 31 2020 22:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29025 * 124.91907 * 2 1 4 4 C 1.31778 * 117.13171 * 180.02562 * 3 2 1 5 5 C 1.50696 * 122.75711 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47139 * 90.01711 * 5 4 3 7 7 O 1.21273 * 120.00259 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99654 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99714 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47004 * 180.02562 * 9 8 6 11 11 O 1.42904 * 110.64058 * 298.31066 * 10 9 8 12 12 C 1.55156 * 110.72286 * 174.97843 * 10 9 8 13 13 C 1.54903 * 101.58351 * 206.13369 * 12 10 9 14 14 N 1.47421 * 104.83315 * 37.00756 * 13 12 10 15 15 C 1.36939 * 125.64858 * 155.85141 * 14 13 12 16 16 H 1.07996 * 119.99982 * 353.90110 * 15 14 13 17 17 C 1.38817 * 119.99954 * 173.89711 * 15 14 13 18 18 N 1.31613 * 119.99986 * 6.83731 * 17 15 14 19 19 Si 1.86797 * 119.99814 * 186.83100 * 17 15 14 20 20 H 1.48505 * 109.47109 * 94.99070 * 19 17 15 21 21 H 1.48503 * 109.46980 * 214.98572 * 19 17 15 22 22 H 1.48496 * 109.47373 * 334.98809 * 19 17 15 23 23 C 1.47020 * 108.70220 * 335.86868 * 14 13 12 24 24 C 1.33645 * 114.49423 * 0.22986 * 4 3 2 25 25 C 1.50703 * 126.03424 * 179.76772 * 24 4 3 26 26 S 1.70982 * 124.91636 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47123 * 90.00069 * 1 2 3 28 28 H 1.08996 * 109.47198 * 209.99817 * 1 2 3 29 29 H 1.09002 * 109.47130 * 329.99884 * 1 2 3 30 30 H 1.09006 * 109.46752 * 330.02619 * 5 4 3 31 31 H 1.08995 * 109.47237 * 210.02470 * 5 4 3 32 32 H 0.97002 * 120.00465 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.47159 * 60.00196 * 9 8 6 34 34 H 1.08995 * 109.47361 * 300.00333 * 9 8 6 35 35 H 0.96699 * 113.99785 * 61.68887 * 11 10 9 36 36 H 1.09001 * 111.00881 * 88.05545 * 12 10 9 37 37 H 1.09003 * 111.00263 * 324.20864 * 12 10 9 38 38 H 1.09002 * 110.36741 * 278.16597 * 13 12 10 39 39 H 1.09003 * 110.36584 * 155.84338 * 13 12 10 40 40 H 0.97001 * 120.00020 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.87818 * 120.47590 * 23 14 13 42 42 H 1.08994 * 109.88526 * 241.48611 * 23 14 13 43 43 H 1.09002 * 109.46861 * 90.00069 * 25 24 4 44 44 H 1.09000 * 109.47110 * 210.00586 * 25 24 4 45 45 H 1.08998 * 109.47014 * 330.00367 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 4.5307 2.0245 -0.0012 6 6 4.8582 2.4063 1.4194 7 8 4.3469 1.8071 2.3416 8 7 5.7201 3.4129 1.6651 9 6 6.0389 3.7836 3.0461 10 6 7.0334 4.9463 3.0454 11 8 8.2549 4.5640 2.4099 12 6 7.2951 5.4457 4.4909 13 6 7.7014 6.9197 4.2420 14 7 6.8440 7.3645 3.1283 15 6 6.4960 8.6609 2.8575 16 1 6.7746 9.4489 3.5415 17 6 5.7850 8.9623 1.7040 18 7 5.3290 7.9927 0.9398 19 14 5.4756 10.7442 1.2364 20 1 6.5223 11.1951 0.2843 21 1 4.1406 10.8634 0.5970 22 1 5.5178 11.5905 2.4558 23 6 6.4241 6.1856 2.3566 24 6 3.9354 -0.4006 -0.0059 25 6 5.3575 -0.8994 -0.0127 26 16 2.4856 -1.4020 -0.0006 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 4.0902 2.8792 -0.5146 31 1 5.4428 1.7222 -0.5157 32 1 6.1294 3.8919 0.9275 33 1 6.4793 2.9287 3.5594 34 1 5.1271 4.0862 3.5608 35 1 8.1540 4.3163 1.4806 36 1 8.1093 4.8892 4.9552 37 1 6.3895 5.3866 5.0947 38 1 8.7524 6.9810 3.9596 39 1 7.5108 7.5210 5.1309 40 1 4.8319 8.2033 0.1339 41 1 5.3366 6.1116 2.3551 42 1 6.7917 6.2621 1.3334 43 1 5.7041 -1.0228 1.0134 44 1 5.4039 -1.8578 -0.5297 45 1 5.9929 -0.1782 -0.5266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733485735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:50 Heat of formation + Delta-G solvation = -47.992805 kcal Electronic energy + Delta-G solvation = -27364.406250 eV Core-core repulsion = 23508.168211 eV Total energy + Delta-G solvation = -3856.238039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.49139 -40.61044 -39.61571 -36.73165 -35.27282 -34.83558 -34.12953 -31.80155 -31.23265 -30.64571 -29.38046 -27.54063 -26.15383 -25.23748 -23.82824 -22.36261 -21.46349 -21.31200 -19.86882 -19.22205 -18.89263 -18.39738 -17.78149 -17.06512 -16.50769 -16.41649 -15.93591 -15.79479 -15.67574 -15.57713 -14.94142 -14.75162 -14.42850 -14.39806 -14.22978 -14.17852 -13.94528 -13.81451 -13.57835 -13.31300 -13.17131 -13.06192 -13.02109 -12.72273 -12.70790 -12.39225 -12.12579 -12.07967 -11.94871 -11.78923 -11.69753 -11.01990 -10.85829 -10.72104 -10.58599 -10.15618 -10.14185 -9.52929 -8.89309 -7.87759 -5.20659 -0.26035 0.39648 0.72351 1.46165 1.46997 1.55772 1.58410 1.64681 2.29747 2.48502 3.15415 3.18781 3.31149 3.45393 3.73525 3.87166 3.91459 3.93419 4.00972 4.05119 4.10929 4.31690 4.44187 4.48295 4.53662 4.61871 4.64620 4.70863 4.72498 4.80871 4.91167 4.94965 4.95160 5.00860 5.09395 5.27745 5.31793 5.33288 5.40837 5.50532 5.66946 6.17647 6.45084 6.78306 6.82409 7.09270 7.17950 7.75547 8.40555 9.22868 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.002706 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.287738 B =10343.068710 C =11575.341366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.027 3.973 3 N -0.502 5.502 4 C 0.057 3.943 5 C -0.064 4.064 6 C 0.522 3.478 7 O -0.578 6.578 8 N -0.715 5.715 9 C 0.123 3.877 10 C 0.107 3.893 11 O -0.551 6.551 12 C -0.108 4.108 13 C 0.130 3.870 14 N -0.628 5.628 15 C -0.245 4.245 16 H 0.080 0.920 17 C -0.061 4.061 18 N -0.944 5.944 19 Si 0.974 3.026 20 H -0.287 1.287 21 H -0.295 1.295 22 H -0.271 1.271 23 C 0.175 3.825 24 C -0.218 4.218 25 C -0.076 4.076 26 S 0.147 5.853 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.147 0.853 32 H 0.411 0.589 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.383 0.617 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.024 0.976 39 H 0.047 0.953 40 H 0.247 0.753 41 H 0.016 0.984 42 H 0.025 0.975 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.925 -21.551 -4.303 22.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.251 4.251 3 N -0.218 5.218 4 C -0.074 4.074 5 C -0.106 4.106 6 C 0.309 3.691 7 O -0.458 6.458 8 N -0.367 5.367 9 C -0.002 4.002 10 C 0.065 3.935 11 O -0.358 6.358 12 C -0.146 4.146 13 C 0.005 3.995 14 N -0.355 5.355 15 C -0.374 4.374 16 H 0.098 0.902 17 C -0.255 4.255 18 N -0.592 5.592 19 Si 0.803 3.197 20 H -0.214 1.214 21 H -0.222 1.222 22 H -0.196 1.196 23 C 0.050 3.950 24 C -0.339 4.339 25 C -0.135 4.135 26 S 0.403 5.597 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.098 0.902 30 H 0.130 0.870 31 H 0.165 0.835 32 H 0.247 0.753 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.232 0.768 36 H 0.120 0.880 37 H 0.105 0.895 38 H 0.042 0.958 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.034 0.966 42 H 0.043 0.957 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.645 -22.285 -3.180 22.666 hybrid contribution -0.009 2.240 -1.146 2.516 sum -2.654 -20.045 -4.325 20.678 Atomic orbital electron populations 1.20579 0.83230 1.04816 1.05027 1.27425 1.03088 0.91044 1.03495 1.66020 1.05393 1.33480 1.16877 1.19526 0.89784 0.93838 1.04280 1.20240 0.99578 0.97112 0.93690 1.20774 0.77585 0.79059 0.91707 1.90667 1.52842 1.54568 1.47678 1.45825 1.46481 1.35368 1.09034 1.21703 0.97728 0.97096 0.83662 1.22536 0.83916 0.91838 0.95231 1.86480 1.31065 1.88925 1.29359 1.22707 1.02975 0.95669 0.93259 1.21724 0.93513 0.93781 0.90490 1.44715 1.56542 1.02800 1.31393 1.19436 1.29764 0.84000 1.04156 0.90199 1.25580 1.00835 1.01468 0.97567 1.70105 1.41774 1.31071 1.16285 0.85117 0.76544 0.79953 0.78068 1.21363 1.22218 1.19562 1.21547 0.95851 0.84230 0.93411 1.26028 1.02120 0.95408 1.10381 1.20395 0.86995 1.02801 1.03339 1.83486 0.96429 1.11197 1.68597 0.87930 0.88004 0.90216 0.86998 0.83546 0.75302 0.90035 0.92754 0.76758 0.88015 0.89524 0.95800 0.93434 0.94337 0.96591 0.95697 0.90792 0.89098 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.46 71.24 0.75 -0.47 16 2 C 0.03 0.65 7.39 88.52 0.65 1.30 16 3 N -0.50 -15.20 10.53 -179.40 -1.89 -17.09 16 4 C 0.06 1.55 5.23 41.52 0.22 1.77 16 5 C -0.06 -1.55 5.88 29.10 0.17 -1.38 16 6 C 0.52 15.99 7.82 87.66 0.69 16.68 16 7 O -0.58 -22.38 16.03 -3.01 -0.05 -22.43 16 8 N -0.71 -20.60 5.17 -463.06 -2.40 -23.00 16 9 C 0.12 3.93 4.73 86.38 0.41 4.34 16 10 C 0.11 3.71 0.92 -9.61 -0.01 3.70 16 11 O -0.55 -17.46 13.10 -148.98 -1.95 -19.41 16 12 C -0.11 -3.61 6.26 31.98 0.20 -3.41 16 13 C 0.13 5.32 7.23 86.85 0.63 5.95 16 14 N -0.63 -31.96 3.39 -692.01 -2.35 -34.31 16 15 C -0.24 -13.67 10.26 84.03 0.86 -12.81 16 16 H 0.08 4.31 7.84 -2.91 -0.02 4.29 16 17 C -0.06 -3.42 5.48 84.86 0.47 -2.96 16 18 N -0.94 -54.76 10.36 21.65 0.22 -54.54 16 19 Si 0.97 45.50 29.56 68.60 2.03 47.53 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 C 0.18 8.10 4.16 86.73 0.36 8.46 16 24 C -0.22 -4.87 6.59 24.64 0.16 -4.71 16 25 C -0.08 -1.16 10.10 71.24 0.72 -0.44 16 26 S 0.15 2.85 23.18 -56.49 -1.31 1.54 16 27 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.11 2.74 8.14 -2.38 -0.02 2.72 16 31 H 0.15 2.27 6.71 -2.39 -0.02 2.25 16 32 H 0.41 10.45 7.38 -92.71 -0.68 9.77 16 33 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.05 1.99 8.13 -2.39 -0.02 1.97 16 35 H 0.38 9.54 8.12 -74.06 -0.60 8.94 16 36 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 37 H 0.09 2.78 8.04 -2.39 -0.02 2.76 16 38 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 41 H 0.02 0.85 7.23 -2.38 -0.02 0.83 16 42 H 0.02 1.26 7.28 -2.39 -0.02 1.24 16 43 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.09 1.13 6.76 -2.39 -0.02 1.11 16 Total: -1.00 -77.93 382.38 -1.68 -79.60 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: -0.26 Total: 26.07 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 6.27 Total: 16.02 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -6.41 Total: -128.93 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -2.00 Total: -41.84 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.31 Total: 1.54 kcal Total: -77.93 -1.68 -79.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733485735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.612 kcal (2) G-P(sol) polarization free energy of solvation -77.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds